Array 1 137986-138619 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007389.1 Thermosipho melanesiensis strain 431 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 137986 30 100.0 36 .............................. TATATCTTATTGAGGCTAAGTGGACGTGCATTTTAT 138052 30 100.0 39 .............................. ATGTTGGATTTCTTCTTTTATCAAGTGTGATAGAAATAA 138121 30 100.0 37 .............................. TAACAAAAAATGTTGTATTGGATTGACGTCGTACTAA 138188 30 100.0 39 .............................. AGACATTAACGCAAATACTGCTCTTGCCGCTCTTGCTTC 138257 30 100.0 36 .............................. TTAAGTAAGTTTTTGGATGGCAAGAGAAGTTTAAAT 138323 30 100.0 37 .............................. TGTGGATGAAAGAATTAGAATTCCCACACCATACACG 138390 30 100.0 37 .............................. TGTACGATGACTCTGGTCGGATTCTACACTCGTTTGA 138457 30 100.0 36 .............................. AAATATTGGTGGTGTTCTTCCTCAAGAATTTTTGGA 138523 30 100.0 38 .............................. ACATTATTGTCATCCTCTGTAACTAGTTACAACACGCC 138591 29 83.3 0 ....-.TT........T...A......... | ========== ====== ====== ====== ============================== ======================================= ================== 10 30 98.3 37 GTTTCTACCTTACCTTGGAGGAATTGAAAC # Left flank : TTTAAATACTTTATAACCTCCTCAAGTTCTTTTATTTTTACATCTACTTCTTCCGGATTGTTTGAAGACACAGCGCTTTTCACACAAGTTTCTAAATGTGAGTTCAATACCTCAACATTAGCTTTTTTAAGGAGAGATATGGTGGCAAGAATTTGTTTTGAAATGTCTATACAATATCTTCCTTCTTCTATCATTTTCATAACTGCCTCAAGCTGCCCTCTGGCATTCTTTAGTGTTTTTAACGCATTTTTATGTTTCATGTCCAAACCTCCCAAAATTCTTTTACACAAATGAATTATATCATATAGTTAAATGTACTTTAACAAACCATTTTTACATATTTTCTGTCGATCTTAGATAGCACAAAAACCCCTAGGGATCGACAGAAATTTTTGTTAATTTTTATTACAACATACTCAATTTATTTACACTTTACAGATTTATATTATTAAAAGTTGCAAAAAAATATTTTTTGTAATATAATATTTATGAAAACTATG # Right flank : CATCTCTCCTTGAGGGAAATTCGTTGAGGCCCTTTGAACTTTTTACCCTACCTTGAAAGTTGAAACTTATATATCCATGTTAAAATTCCAATAGTAGATATACTTACATTAAGGAGGCATAAAAATGGACTTTTGGAAAATTGTCCTTTTCTCTGTTCTCATATTAATGCTTTCTCCTTTTCAAGTGGAGGTTTCTTCTCATGAAAAGCAAGCATGGTTGAAAAAGGTTAAGGAATACGATGGTGTTCCCTACAAATGGGGAGGAAATTCAAAAGAGGGTATAGATTGCTCAGGACTTGTAATAGAACTTTATCATGCAATTGGAATATTTCTTTTTAAATACGAGAATACTTTGTTACTAGATGTAAGTGCTGATGTGTTGTTCAAATACAATACACGTCCAATAGAATTTTCTGAGTTAGAACCTGGAGATTTGATTTTTTATGATACCGAAAACGATGGAATAATAGATCACGTAGCTATTTTTGCAAAAAAGGAAA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTACCTTACCTTGGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 2 360534-360035 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007389.1 Thermosipho melanesiensis strain 431 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 360533 30 100.0 37 .............................. TATTTGGTGTGTGTGTATCTATTGTTCTCAGCTGAAT 360466 30 100.0 37 .............................. AATATATATTGGATCCGCATCAAGTAGTGACTTGAAA 360399 30 100.0 38 .............................. GAATTTGCGCTTTGTCAAGATTGCTGGGAAGAATATTG 360331 30 100.0 39 .............................. AGAAACAAAACAATTAAACAAACCATCATTGTTATTTTG 360262 30 100.0 35 .............................. GCCTCTATTTGTGTTAGTTTCTGAATTGCTTTCGT 360197 30 100.0 36 .............................. TGATGGAACAGTAAGGTTTCAATTAGCCATTCCTGC 360131 30 100.0 37 .............................. TAACGGCGAAATATGGCGCTCGTTTTGAGTGCTTTTT 360064 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 8 30 100.0 37 GTTTTTACCTTACCTTGGAGGAATTGAAAT # Left flank : TTATAAACTAGAAAAACATTTTTTGGATGATGAGATTTATACATCTCTAGTTATGGAGTGGTGAATATGTTTGTAATTTTGTATTACGATGTTAATAAAAAAAGAGTTTCAAAAATGCTTAAAACGTGCAGGAAGTATCTAACTTGGGTTCAAAATTCTGTGTTTGAAGGTGAAATTAGTATTTCTAACTTGGAGAGATTAAAAATCGAGTTGGAAAATATAATTAAAGATGAAGATTCAGTAGTGATATATACTTTCAAACAAATGTTTTACAGTAAAAGAGAAGTGTTAGGAAAAGATAAAAAAGAAGAAACAAAATTTATTTAGAAAAATCTGTCGATGTGTAATAGAAGAAAAACTCCGGGAGATCGACAGAAAACAGAATAACATTTTTGTAACTTAGGAATACATTGTGTTAATTATGTTAAATTTAATATGATATAGTTTCAAAAGTATTGCTCTTGAGAAAGAAATATGATAGAATATTAATGGATTCTATG # Right flank : GAAGTTTTAAAAAGTAAGTGTAGCTTATTAAATTTTTTAGCTTTAGAAGAAAATTGAGATATTGGGATTTGATTATTTTACAAATTTATTGATAGGGTTTCGAAGTAGAGAAATAGATATTTTGATTTCAATTGTTTTAATGAGAAAAATATATTTTTTGGGTTGATTTAAAATAATCTAGACAAAACAATGGTTATATTTTAACAAAAGATTTTAGCTTTACTGTTATTATTTTGTTTTAACTTTTGTTTTGGTTGTATTTTTAATTTATTAAAAACAAGAATAAATGTTTAAATTTAAGTTATAAGTATGATAAAATAAAAACGATCAGGTACATGTTGGAAAGGAGGAAGTTGTATGAGACAACGTATTTTGTTTAAGTTGGTAACACCAATAATTATTTTGGCATCTTTGATTATTGTAATATTTATAACTACCTACGTAATAACAACTTCTCAAAAGTTTGATGCGTTGATTGTTAATCTTGCAGGAAGACAACG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTACCTTACCTTGGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 3 758276-754395 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007389.1 Thermosipho melanesiensis strain 431 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================== ================== 758275 30 100.0 38 .............................. TAGTCTTGCTTCGAAAGGGCACGTCGCCGCAATAAAAA 758207 30 100.0 40 .............................. ATAATTTCAGCAAAGGGCTTTCTGTGATCAACCAAAATAA 758137 30 100.0 42 .............................. TGTTCAGATTCTTGTGCTTCTTCTTTTAATGTTTTAAATAAG 758065 30 100.0 44 .............................. TTTACCCCTACCCAAGCACCGCTTGAGGTAGGGGAATAAAACTC 757991 30 100.0 43 .............................. GTTGTAGTATTCGTAAAAATACATTGCTAAATGCTATTATATG 757918 30 100.0 34 .............................. TGCGAAGCATAAAATTTATAAAAATTTAAAATAC 757854 30 100.0 40 .............................. TGTGTTTCAGTAAATACCAAATATCTTGCATGTTTTGTTT 757784 30 100.0 40 .............................. TGACAATATAAAACAAATCGTAACTGTCACCGAAATCCCC 757714 30 100.0 40 .............................. TAAACTTTACTTCTAACAAAATCCTCATAATTAAAAAATA 757644 30 100.0 40 .............................. AACATAATACCCCACCTCCTCATGTAAATCAATTATTTCT 757574 30 100.0 40 .............................. ATACAAGTCAACAACTGTTAATTTTTCTACAATATAATCC 757504 30 100.0 40 .............................. TACACGACAGGCCATGGCACCTTCCCGCCGCTTCCTGGTT 757434 30 100.0 40 .............................. GGGGGTTCGATTATAGCCCCTTTTTTGACAATATAAAACA 757364 30 100.0 44 .............................. ATAAACTTTACTTCTAACAAAATCCTCAAAACTAAAAAATATCA 757290 30 100.0 42 .............................. CTGCAAGCTTTTCAAGTGCGACATTCAAAATTGTGTCTAATG 757218 30 100.0 36 .............................. GGTCCCCTATTATTGCGAGGACTAGCAGTTTAATAT 757152 30 100.0 41 .............................. CAGGGTCACACCCCGAGTGACCCTGCAAATTTTCTTAATTC 757081 30 100.0 35 .............................. AAGTCAATACTGCTCTGCCATGACCGCTATCATCG 757016 30 100.0 40 .............................. AAGGATTTCAACAATTCTATATCAATCCTCTTGAAATACA 756946 30 100.0 41 .............................. CCATTTGGAAGGTCAGATTGACCTTCCCGTTTTGCAAGGTT 756875 30 100.0 37 .............................. ACGTCTCGCCAATTTTATCGCCAGTTTCTGGATCAAT 756808 30 100.0 43 .............................. TCAATATCATGCAAGTCCACCATTACTTCTTCTGATAATTCTC 756735 30 100.0 40 .............................. CACCCCCGCCAAAAATTTTTGTTTCAACCTCCATGCTTTC 756665 30 100.0 43 .............................. GTATTTGTCCATATCCAGAACCCACACAATTATAAAATATATA 756592 30 100.0 46 .............................. TAGTTACACCATTACCTGATAAATTGCCAATGTTAGGGGTTTTTAA 756516 30 100.0 39 .............................. CCTCTAAAATACTTAGAAACAAATGCGCCTAAAATGTTC 756447 30 100.0 39 .............................. AAGAAATTTCAATACAATCACCCAGTCTTTGCACTTGAA 756378 30 100.0 41 .............................. TATTGGTAATGCACCATCTGATTTCGCATATATTGTATATG 756307 30 100.0 36 .............................. CAAGATATCGTTCCCAAACTTGTGTGTTGATGGGTA 756241 30 100.0 37 .............................. CGGTATATGGCGTTACGATTCCGGTTTGTATTGCTTC 756174 30 100.0 40 .............................. TTCTCGCAACCCTTTCAACACCTTCTTTTCTTGTTTTGTC 756104 30 100.0 43 .............................. TTAAATTGTCGCTCAAACGATACTCTTGAACCTCAAAAATACC 756031 30 100.0 42 .............................. CAACCTCTTCGATGCTACGTTTTAATTCTTCTACATGATCCT 755959 30 100.0 39 .............................. TTATTTATCTTACAAAACCAGGAACCCCAACAATTCGTT 755890 30 100.0 43 .............................. GTTTGTTTCATCATCGTTCCATATTTCAATTGGTAATTGTTTT 755817 30 100.0 40 .............................. GAAACGATTCCATTGTTAAGTAAAAAAAGAAGAGGACTTT 755747 30 100.0 41 .............................. TTTGTTTTTGGTTGCCTGAATCATACCTGATAATTTTTTGT 755676 30 100.0 38 .............................. GCGACATTGGTAAGTTATACACCAAGCGCGCTAAAAAA 755608 30 100.0 42 .............................. AGATTTTAGTTGATGTACTCTCTTGACAATGCGTTCAAATAG 755536 30 100.0 41 .............................. GCAGTTTTTTCAGCATCCCAGCCATTAGTCCAAAATTCGTC 755465 30 100.0 37 .............................. ATTAAATCTTCATAAAGTCCTATTCCATAATACTTTT 755398 30 100.0 47 .............................. TTGAATTCTGTGATGGATAAAATTTATAAAAATTTAAAATACATTTT 755321 30 100.0 40 .............................. CTATCAATCTTCCTGAAATATATATTTACATATTCACCAA 755251 30 100.0 37 .............................. TAAACTTTACTCCCTTCAAAATCTTCAAAACTAAGAA 755184 30 100.0 39 .............................. CTTTTATTTGATCTAAATCTGCGTTTAGCGGTAAGTATA 755115 30 100.0 40 .............................. GTACAAGTTTGATTAGGTCTTCCTCATCCAATTTATTAAT 755045 30 100.0 37 .............................. CGACGAAAATGATTTCTCCCTCAGAGGGGGGGACTAC 754978 30 100.0 41 .............................. CTGTCCTGCACCCTATCATAAATATTCCAAATACATATTTC 754907 30 100.0 39 .............................. TTATTTATCTTACAAAACCAGGAACCCCAACAATTCGTT 754838 30 100.0 38 .............................. TTTGGCAGCCACTGTTGCCTCAGCCACCGTGGCGGCAA 754770 30 100.0 40 .............................. TAAAAATACCCGCAGGCCATTCTTCATCAAAAATAATTGA 754700 30 100.0 40 .............................. TAACTTTTTGCCACGTTTTGTTGGCAACGTTTATTGTTTC 754630 30 100.0 38 .............................. GTAATATTTGGCTTTTTCAAGTTGATCCACGATTGCGT 754562 30 100.0 38 .............................. TGAGGCCTTGTCTTGAACCATATGCTTGGATATGAGAT 754494 30 96.7 40 ........................G..... TACATTTCATATCCAGTATCGTCGCAATATTGCAATGTTA 754424 30 93.3 0 ........................G....A | ========== ====== ====== ====== ============================== =============================================== ================== 56 30 99.8 40 GTTTAGAATCTACCTATGAGGAATAGAAAT # Left flank : CATAAAAGTTTGAAAACTATCTTACTCAAAATCGATAAATCAAGTAGCTCAAAAAAAACATGGCATTGGACTTATCCAACGCCATGTTTTGTTATAATAAATAATTAATTAAATAAAATCAAATCAATTTTTCGAAATAGTATAAATTAATATTGATGTAATTCAAAAAATAATTCAAATAAGTAAATTGTAGATATAAAAAATAATCATTTTATATTTACAAAAAAGAAAAAGTGAATAAAAACACAAATAAAACCGTTACGAAATTCACGGTAATTTTTCTGTAACAACATATCGCAAAGTATCTTTAATAAATGATTTGCAAAATGCTATTTGTAACGTTTGTGTTAAGCAAGAAAAATAACCCGAAAATTGAGTAGGTTTTCCGAAGCTAAAATGTGAATGAAGCCTCATGAATAAATAATTTTACAAATTAGAAACTTCCCGGAAATGCATTCGTAAAAAATAGGGTGTTATAATATTTATGGGGAAAGTGACGG # Right flank : TTTTCAATAGGGATTGAAATATATATTCAAAGAGTTACCTAACCACCCTTTTAAATTAAGGGTGGTTTTTATTTGATTACTTGACTTTTTAAGTAAGAAGAAAAAAGATAAAACAAGATGTGAAAATGTTAATTTTAAAAGGGAAAAATCATAGAGAAATACCTATTTTTGTAACAACAAAACAACGAAGTACATATATATCAAATATTTTTATTATTTTAGAAAGGTATAGGCGAAGAAGCTGTTTATCTTCAAGTTTAAAAAATAAAACTTAAAAACGGAAAAGACAACATTAAATTATGTGTAGGTTATGATATCTTAATAATTAACATTTTTTTATGGTGCTTTTAATTTAAAAAAATGTAAAGATGATATAATTTAGAAAACAAATATGGGGGGTGTCTTTTTTGAAAACAGTGGTTGTTTTAGATTATGGTTCGCAGTATACCCAGCTTATTGTAAGAAGGGTACGTGAAAAGGGGTATTATGCAGAACTTTTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAATCTACCTATGAGGAATAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 4 1639895-1638809 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007389.1 Thermosipho melanesiensis strain 431 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 1639894 30 100.0 40 .............................. CGCATCAAAGAATGCGAAGAAGAATTAACAAAACAAGAGA 1639824 30 100.0 37 .............................. ACTTGACAATGGCGAATCATATCTGAAATCACAATCG 1639757 30 100.0 38 .............................. TATGAATAAACAAGAAATGATAGAACTGGTGATTTTTC 1639689 30 100.0 42 .............................. ACTTGCATGATATTGAATATATAGGAGTTCTCAATTCTAATG 1639617 30 100.0 43 .............................. AAAATACATATAGGGTAGAGGATATAGTTGCATATTTTTACAA 1639544 30 100.0 43 .............................. TATTTTATTCTTCCGTCAGGACATTCATTAACGTTGCCCAGTA 1639471 30 100.0 44 .............................. GGTAACTTTTGAGTTGCCGCGTACCACCCTTGTGGAAAACCTTG 1639397 30 100.0 43 .............................. GGGGAAAGCATGGAGGTTGAAACAAAAATTTTGGGGGGAGGTG 1639324 30 100.0 38 .............................. GAAGAAGAGGAGCGTTAGTTTTGCTCCTCTTCTTTTTT 1639256 30 100.0 39 .............................. GAAAATTGGTGCAGCTGGTTATGATGGCCTTGTTATGAT 1639187 30 100.0 41 .............................. GAAACAAACAGGGACCCCGATATATGGGAGGCTCCCTGGAA 1639116 30 100.0 36 .............................. TCTTTTCTCATCCTTGGGGGTGATCGCCCCCAGGGA 1639050 30 100.0 40 .............................. GGAGGTAAAGGAAAAATACGGAATTGGAGTTATAAATTTA 1638980 30 100.0 40 .............................. ATGAAGTTATTCGTCGTGCTGATTTAAGTAAATTATTTAA 1638910 30 100.0 42 .............................. TAAACAAATTTTTGAAAGAAGGGGGTGTGGCGGTAACTGTAG 1638838 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================ ================== 16 30 100.0 40 GTTTCCATTCCTCATAGGTAGATTCTAAAC # Left flank : TTCCGTTATTTTGCCCTCAAATACAGATTTCTGCACCCATTTTAAGTATTTCCTTGCCGTTTTTAAAACTTTTTGTACTCTTTTTTTATTAACATCATATACCATTATTACGTACATTCCGTTCACCCCTTGTTTTTAAAAAGGTATCCCCAGCTAACGCCGGGAATACTAAATCCAAAAAAACATAAAGACAAAGTACATCAATGTATCACAATTTTCAGCCAAAAACCTGTAACATATAAAACCGAAAAATTAAACAAGCAAAGTTTCTTTTTCAAAAATCCTTATCACAAATTTGTATGCAACCTTTATCCTTTTCATTATATTTAACGAATCATATTTAAATAATCTGACATAATCCAAAAAAAGATTACAAAAAAACTGGTGAGATTTTTTCTCACCAGTTTTTCATAAAAAACAAAAAATAAAAATTTTATTCCTTAGCTTTTGTATCATATCAATACAATCTGAATTATTTAGAATTTATATTATTACCACAA # Right flank : CCGTCACCTTTCTCATAAATATTATAACACCTTATTTTTTGCGAATGCATTTCTAGGAAGTTGCTAATTCGTAAATTCACTTATTCATGAAGTTTCTTTTGCATTTTCATTTCGGAAAACCTACTCAATTTTTGGACTATTTTTCTTGCTTAACACAAACGTTACAAAAGACATTTTGCAACCCATTTATTAAAGCTCTTTCCCGGCATGTTGTTACATGAAAATTACCGTGAATTTCGTAACGATTTGCGATGTTGTAAATTGTTTAATTTGCGAAATAGTAAATTTAAATATAATTTTTTATTAAATTTATTCATATCAAATTATCCAAATATTTTATATTTTTATATTTTACACTTTTTTCAAAAATCTTTTTAATCTTTATATAATTATATAATTTACTTATTTGATAATTTTAATCTATTTATTTCCTCGCTTAATATTTTTCAGGGACTTTACTTATTTTTTTATATGTTTCACTCAAAACTAAATCATGAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCCTCATAGGTAGATTCTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 5 1651957-1651085 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007389.1 Thermosipho melanesiensis strain 431 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 1651956 30 100.0 41 .............................. TTCCAGGGAGCCTCCCATATATCGGGGTCCCTGTTTGTTTC 1651885 30 100.0 39 .............................. ATCATAACAAGGCCATCATAACCAGCTGCACCAATTTTC 1651816 30 100.0 38 .............................. AAAAAAGAAGAGGAGCAAAACTAACGCTCCTCTTCTTC 1651748 30 100.0 41 .............................. AAAAGAAGAGGACTAAAAGTCCTCTTCGAAAATAATCTCTA 1651677 30 100.0 41 .............................. TGGTAATAGCCACTTCCTTTTGTGCCTGGTTAATTAATTTG 1651606 30 100.0 40 .............................. TCTCTTGTTTTGTTAATTCTTCTTCGCATTCTTTGATGCG 1651536 30 100.0 42 .............................. ATTCTTTCATCTCCTTTAATAATTCATCTAAAAAACATAAGT 1651464 30 100.0 39 .............................. CTATTTTCCTTTAAAAATCCTTTTTCTGATAAATATTTA 1651395 30 100.0 37 .............................. CTGTGTGTGGACACCCTTGCTACCATCCCTGACGTGG 1651328 30 100.0 39 .............................. CCGCAACCCCCCACCCACGATTTTTGTTTCTATTATTTT 1651259 30 100.0 43 .............................. ACGCTATTCTCTCAGCGTATTTTTCTATTTTCTATATAAAACC 1651186 30 76.7 42 ....T....A.G.TA.....AG........ TATCCATGGGAGCCTTCTTATAATTTTTTCTCTCAATCTCTT 1651114 30 76.7 0 ......T....C..C..A..A.......TT | ========== ====== ====== ====== ============================== =========================================== ================== 13 30 96.4 40 GTTTAGAATCTACCTATGAGGAATGGAAAC # Left flank : TTATATCATGAAAATTGAATCATATGAAAAATCAAAATTTTTAAAAGAATTTAGTTGGTAAAAAAGTTATAGATAAAATATCAATCGATTTATGGTAAAAAATAAAAATAAATTCGAATTAATTTTTAAAAATATCTTCAATTGTTCAAAAATAAAAATAATTAATTTTTCAAGAATTAAATAATATGCAAAAATAATAAAAAATTATATTTAAATTTACTATTTCGCAAATTAAACAATTTACAACATCGCAAATCGTTACGAAATTCACGGTAATTTTCATGTAACAACATGCCGGGAAAGAGCTTTAATAAATGGGTTGCAAAATGTCTTTTGTAACGTTTGTGTTAAGCAAGAAAAATAGTCCAAAAATTGAGTAGGTTTTCCGAAATGAAAATGCAAAAGAAACTTCATGAATAAGTGAATTTACGAATTAGCAACTTCCTAGAAATGCATTCGCAAAAAATAAGGTGTTATAATATTTATGAGAAAGGTGACGG # Right flank : TGCTTTGTGGTACATTCATATACGAAGTTTTTTAGTTTAGGTCTTCCTAATTATTAATTATTACTCAGTATATATTAATAAACATGTATTAAAAGGATATTTAAACGGGAGATTTTGTGACAAAAAAGTTTATTAGTATTTTTGGAATAAATAATTACTAAAGAAAATAAATATAAAAAACGATATTTTTGCAAACAATAGGGAAAAGACGATAAAGTTTTAATATTCTTAACTGAGGATACAAAAAAATTAAATTGAGACAACTAATCTATAACAAACTTAGAAATTTAAATTAGAAAACTTAATGAACGGTGGAATGTTAAATAAACAGAAGAAAGAAAAAATGTTCGCGTATTCCTATTATGCTTCGTACAATAAGAAAGAATTTGTATTATGAGTAAAAGTACTGGAGCAAATAAACATGATAGTAAAATCTTTGAAAAAACATTGGAAAAAAACAATAGAAAACCAAGAGCTGTAGCAATAGATGCTGGGTATAA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAATCTACCTATGAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //