Array 1 5339-6586 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHUF01000022.1 Salmonella enterica subsp. enterica serovar Newport str. CVM 19536 SEEN536_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5339 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 5400 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 5461 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 5522 29 100.0 32 ............................. TCATGCTTTCGACTAAATACTACCGCGACAAC 5583 29 100.0 33 ............................. AAAATAACAACATTATCAGTGTGAAAAAGTCTC 5645 29 100.0 32 ............................. TAACCATGGCTAAGAAAAAAACTTACAGGACT 5706 29 100.0 31 ............................. AGATATGAAAAACGTAAAATTTACACCGCCA 5766 29 100.0 32 ............................. TGAAGAACGGCCAGCCCGTCGAGGTATCAATC 5827 29 100.0 32 ............................. CAGGCTGGTGCCATAGTTTTGAGTTTCTACCG 5888 29 100.0 32 ............................. CGTTGTCGTTGCTGGACAGAACTCCGGGGACG 5949 29 100.0 33 ............................. TACGGGCATGGACGGCTCGTACAGTTTTTGACG 6011 29 100.0 32 ............................. TGCTCCGCTTCTGGTAGTGCTTCCAGACCCTC 6072 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 6133 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 6194 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 6255 29 100.0 32 ............................. CTCCCCCGCCTGATAATTACGCCATCTGCAAT 6316 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 6377 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 6438 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 6499 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 6559 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGGCTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23255-24199 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHUF01000022.1 Salmonella enterica subsp. enterica serovar Newport str. CVM 19536 SEEN536_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23255 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 23316 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 23377 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 23438 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 23499 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 23560 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 23621 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 23682 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 23743 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 23804 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 23865 29 100.0 32 ............................. GGGCGAAAACGCGCTTTGAAATTCGCACGGTC 23926 29 100.0 32 ............................. GGGGCTTGTTAATATTTCTCTCACTGACTACG 23987 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 24048 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 24109 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 24170 29 96.6 0 ......G...................... | A [24197] ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //