Array 1 333973-333825 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIF01000003.1 Xanthomonas albilineans strain MTQ032 Xal-MTQ032-G1-Mol001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 333972 28 82.1 32 CC.AG.G..................... TTTGACCGCGAACTCATGCCCGTCTTCCCGCT 333912 28 100.0 32 ............................ AATGCGCTGGAGCAGCGGCTGAGAGCAATCGA 333852 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 3 28 92.8 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CGGCGTGCCATTCACCGGCTTCCTCTACGCAGGGCTGATGATCGACACCAGTGGCGCGCCGAAGGTGATCGAATTCAACGTGCGCTTCGGCGACCCGGAAACGCAACCGGTGATGCTGCGCCTGCAATCGGACCTGGTCGATCTGGTCGAGGCAGCGCTGGATGGGCGTCTGCATGCGACCCAAGCGCAGTGGGACCCGCGCCCATCGCTGGGGGTGGTGCTGGCCGCGGCACCGTATCCGGACACGCCCGTCACCGGCGAGCCGATCACCGGCCTGGAGGCGGTGCCCGCCGATGCCAAAGTGTTCCATGCTGGCACCGCGCTGGATGCGCAGGGGCGCGTGGTCAGCGCCGGCGGCCGCGTGCTGTGCGTCGCCGCGCTGGGCGATAGCGTGGCCGATGCGCAGCGCCGCGCCTATGCCGGCGTGGCCCGGATCCACTGGGCCAGCGCTTTCCACCGCCACGACATCGGCTGGCGCGCCATCGCGCGCGAACGCGGCG # Right flank : ATCAGGCGCTGGATCGCCACGCCAATGCCTCCCATTCACTGCCGCACCCGGTGACGGTGATCGCGTCGCGCCAACCACGGGTGCGCTATCTTGTTGCGGTGCACACAGCCTCGCTCGAATCCCACCTCAGCCGCCTCTGGGCACATGAAAAGGCCAGCTACGGCCTGCGCGTGTTCATCGCGCTGGCCGCGGCGATGGGTCTGTGCTGGCATCGCCAGCAGTTGGATGCGCTGCCGGCGATTTTCCTCGGCACCATCGCCAGCGCCATCGCCGAAACCGACGACAACTGGCTGGGGCGGATCAAGTCGGTGCTGCTGTCGCTACTGTGCTTCGCCGCGGCCGCCGCCGGCGTGGTGGTGCTATTCCCGTATCCGCTGGCGTTCGCTGCCGGTCTGGCGCTGTCCACCTTCGCCCTGACCCTACTCGGCGCGCTCGGCGAGCGCTATGCGTCCATCGCCCAGGGCACGGTGGCGCTGGCGATTTACGCGATGATCGGCATC # Questionable array : NO Score: 3.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2754408-2754555 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIF01000003.1 Xanthomonas albilineans strain MTQ032 Xal-MTQ032-G1-Mol001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2754408 28 96.4 32 A........................... AATCGCCGCAGCGCCCGCACTGACCGATGTAC 2754468 28 100.0 32 ............................ TTCGAGGCGAAGCTGAAGGGGGATGCGTTTCA 2754528 28 89.3 0 ........................TGC. | ========== ====== ====== ====== ============================ ================================ ================== 3 28 95.2 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : GGTCGAGCGCGCCGTGCGCAACAGCAGCAAGACCAAGGACATCGTGCTCGATCCGTTCGGCGGCTCCGGCTCCACGCTCATCGCCTGCGAAAAGTCCGGCCGGCGCGCGCGCGTGATCGAACTTGATCCGAAATATGTCGACGTGATCGTGCGCCGCTGGCAGGACTACACCGGGCAAGCCGCAATACGCGCCAGCGATGGTGTGGCATTCGGTTCAACGCTGGAGGCCGAGCAGCCAGGGATGGCGTAAATTCCCCCCGCCTGCCCTCGCCTTGCAGCAACCGGTGACGGTGCTGCGCACCGTCACCGTTATCATGCAATATCCGAGCAAGAAGCCAAGCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTGATGAAAAACAATTTGGACAGATGCACAATGACAACGGTCATGGCATGCTCG # Right flank : AATGCTCGGGGCATCCATCGGACTCGATGCTGGGTAGGGGGGTCAAATCCTTGCGATGCAATCGCAAAAGACCGCTCGCCCCCTCAATTTTTCGCGCGTGCAAAATGAAAAACTTTTTTTGGACAGAACCGTGTCAGAGCTAAGCGTTGCAAGGGACTACAAGGCTGACTTGGCGCAGATCGAACAGATCGATGCGACGCCATGGACTGCGGCAAGTCACGCGGACATGACCTCAGAACTGAAAACCTATGCGCGGTCGTAAACCTCTGCCTGTAGCAATCAAGAAGATCAAAGGCACGCTGCAAAAATGCCGGACCAACCCGCATGAGCCCCGTCCCGACGGGCAATTGGGTGAGCCACCGGAGTACATGTCTGACATTGCCAAGGAGGCATGGACGTATGCGGTAGAGAACGCACCACTCGGTTTATTTTCTTCCCTTGATGCCACGGTTCTGGAACGCTGGGCCAATTGCGCAGGTCTGTACCGCGAGGCGCTGGCA # Questionable array : NO Score: 3.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3312160-3314444 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIF01000003.1 Xanthomonas albilineans strain MTQ032 Xal-MTQ032-G1-Mol001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 3312160 31 100.0 33 ............................... CGCATTGACTCCCAGCGCGCATACGGCACTGCA 3312224 31 100.0 34 ............................... CTCGCGGGATACGCCGGAATAGCCAAACCCCTTG 3312289 31 100.0 33 ............................... TGGATCCGCCGCATGTCCGAACAGCACGGCATG 3312353 31 100.0 35 ............................... TTGGTAGCTGCGCGAGACCTGTTCGAGCACCATGC 3312419 31 100.0 35 ............................... TTCATAACGGGGATGCTCCTTTCAGTGTCAGATGG 3312485 31 100.0 35 ............................... CGCAATGATCGTGCGGACGCTGAGGCGATGCAGAG 3312551 31 100.0 36 ............................... TTGCGCGAGCTAGCCTTCTTGGCGCTCGCGCTTGGG 3312618 31 100.0 37 ............................... GTTTGTCGTGCCAGCAACGCTTGGCACTCGGTACGGG 3312686 31 100.0 36 ............................... TTGCACAGGGGCATTCGCCCCGACAATTTCATCGAG 3312753 31 100.0 35 ............................... AGCCGTAAGCTGCGCGCCGTCGTAGTAGTCGCGAG 3312819 31 100.0 34 ............................... TACGACGTATTGCCTTCCCGACTCAATCTGTACG 3312884 31 100.0 35 ............................... GACCTTGCTGGCGTACTCATAGAGATTGATGGTCG 3312950 31 100.0 35 ............................... GACTTCATCCTGATTGCCCAGCAGGGTCTGCAACT 3313016 31 100.0 35 ............................... GGTATACAGCTGCGCCGTTGGCATCTTGGGAGTGG 3313082 31 100.0 35 ............................... TTGGAAGTGCTCGGTATCGCCAGCGGCGAGGGCCT 3313148 31 100.0 34 ............................... TCCTAACCCTGTTGCGTCCGGACGTGATCTGACG 3313213 31 100.0 37 ............................... AAGCGATCCGATGCGGTCGGCCATGCCGGCCTTGACG 3313281 31 100.0 35 ............................... CGACCGAGACCGACTCGCCTTCCAGCCCGCGCAGG 3313347 31 100.0 34 ............................... GTGCTCCTCGATGACGGATCCGCAGTCGCTGCAG 3313412 31 100.0 34 ............................... TCCTAACCCTGTTGCGTCCGGACGTGATCTGACG 3313477 31 100.0 38 ............................... GCATGTGCGAATGCACGACGGTCGGGGCCGAATGATGG 3313546 31 100.0 36 ............................... GCCTAGACCTCGGCAAAGAACCCGCCTATGAGCCGG 3313613 31 100.0 36 ............................... CTTTGGAAATGCTCACCCACCCCATGCGCTATCTGG 3313680 31 100.0 36 ............................... ACAGTCTGGGCCTCTTGAGCGATGCGCTTCAGCAAG 3313747 31 100.0 35 ............................... ATCCTGGCTATTGTCGCAATTGTCAAGGGCGGCGC 3313813 31 100.0 35 ............................... GAGTTCAGCCGCGGCCCGCTGGTCTGGCGTTACAG 3313879 31 100.0 34 ............................... TCATCTGACTCTCCCTCACTGTTCAAATGGGCAA 3313944 31 100.0 34 ............................... GTACTGATTCCATCCGGGCTTGCTCCTCGTGGGC 3314009 31 100.0 36 ............................... AACGGTAGGAAGGCCGCTGAGGACTGGGCGCGCGCG 3314076 31 96.8 38 ........T...................... GATTTCGTCCTCTCCGTAGCTGTATGGGCTGATGCCAG 3314145 31 100.0 37 ............................... ATGTACTACGTACACGGGAGGGCCATCGCATGAGCCG 3314213 31 100.0 37 ............................... GCCAGTCAACGTGGAGAGATTCACGGCAGCGCGGCTT 3314281 31 100.0 37 ............................... GGCACAAGCGTCCAGCCATCCGGCACACCCTGCAGGC 3314349 31 100.0 34 ............................... CTTGTCATTTCGCACGCTGGTGGTGGCTAGGCTA 3314414 31 90.3 0 ............A......C..T........ | ========== ====== ====== ====== =============================== ====================================== ================== 35 31 99.6 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : AAATAAAATGGCAGTCGTCACATGATGGTCTTGGTCAGCTACGATGTCAGCACTAGCTCACCGGGAGGCGACAAGCGCCTGCGCAAGGTAGCCAAAGCCTGTCGCGACCTGGGTCAACGCGTGCAGTTCTCGGTCTTCGAGATCGAAGTGGACCCGGCGCAATGGACCGCACTACGACAACGCCTGTGCGACCTGATAGACCCGGACATCGACAGCCTGAGGTTCTACCACCTCGGTGCAAAGTGGGAAGCCCGCGTCGAACACGTCGGCGCCAAACCCAGCCTTGACCTCAAAGGCCCACTGATCTTTTGACGCGAACCCCAAGCGACCGGGAATTCACCCGCAGGTTCGCAAAAAATGCAAACTATTGATATAAAAAAGAAAGCCGACTCTCAGACCCTCCCCCCCCGGACACAAGAGCATGCAATCGCCCGGTCGAGATGCGATTCGCGAAAACAGGTTTTTTCCTCAAGCACACGCCAGGCTTTATCCTGACGGGG # Right flank : CGAACACCTTGGATTACTCCACCGTCACCGACTTAGCCAAATTGCGCGGCTTGTCCACATCGGTGCCGCGCGCCAGCGCAGTGTGATAGGCAAGCAATTGCACCGGCACGGTGTGCAGCACCGGGCTGAGCAGGCCCGCGTGACGCGGCGTGCGAATCACGTGTACGCCTTCGGATGCGTGGAAATTGCTGTCCTGATCGGCGAAGACGAACAGTTCACCACCGCGTGCACGCACTTCCTGCATGTTGGATTTCACCTTTTCCAGGAGCGCATCGTTGGGCGCGATCACCACTACTGGCATGGTCGCGTCCACCAACGCCAATGGGCCATGCTTGAGTTCACCAGCGGGATAGCCTTCCGCATGGATATAGGTGATTTCCTTGAGTTTGAGCGCGCCCTCCAACGCAATCGGATAATGCAGTCCGCGACCGAGAAACAGCGCATTGTGCTTGTCGGCAAAACGCTCGGCCCACACCGCGATCTGCGGCTCCAGGTTGAGC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 3496889-3496746 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIF01000003.1 Xanthomonas albilineans strain MTQ032 Xal-MTQ032-G1-Mol001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3496888 28 85.7 32 C.GAG....................... TATGATTGTCAGATCGCGTCCGGACGTAACAG 3496828 28 100.0 27 ............................ AGCTGAATGAGCTAATTGGTTCGTTCT 3496773 28 71.4 0 ...A.................CTGCGGG | ========== ====== ====== ====== ============================ ================================ ================== 3 28 85.7 30 GTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : TGACCCGGCGGGCCGCGTCCGACAGCCAGGTGGCGTAGTCGTACTTGGAATCTGTGTCGCTATCGCCCTCATTGCCCTTCAGCTTGGCCTCGCGCCGCGCGTCGATGAACGCGGCGATGGCCGAGCGGAAGCGCTCGGAGCGGGTGAGATGTTGCGGGTCTTCTGTCATGTGGAATCCTTTCGTTCGCTGGAGTGAACCTGCATGTAGAATCCCCACGGCAGCAAGCCACCGTGGGGTGTGGGAGGGGTATCCCCTCAAACGGCTCTTCTGAAAAAGTGTCGTGAGAGCACTTCCTGCATCCTTCTTTGCACAGCAGTCCTTTGTGCGTAGGTCCGGGTTCCAACCGGCTTTGCTGCTTCGGCCCGTCATCGTTCACAGCGATGACGGGTTTTTTTTAACCAGCTGTATGTGATAATTTTGTTCGTAGGATTTTATGGCGCATTTTGCTACTCTAGCCAAAATTTTGTGAAATGCAACAACATTGATAGCGGGCTGATTT # Right flank : CACGGAAGCCCTTCTCATTCCCACGACTTGAAGCCAAGTAAAGGGTGATACCCCCACTTCTTCCCGCCCTTGCCCTCAGGCACGTTCACCGTCGCCAGCCGCTTGGCACAGTCCTGCAACGACAGGTCGAGCTGCTCGGCCTGCTCGGTGAGCAGCGTCATCAGGTCGTATTCGCCCCAGGGCGCGATGCCGGGACCAGGTTCGAGCGCCAGCGGCGCGCACGCACTCTGTTCCACGACCGGGTAGAGTTTTTTGTCGCCGCGATGGTCATCGTCGTCTTCGATGCGATGCAGCACCACGCGCTCCTCGTGCTCATCGGGTAGAAACACCAAAGTGGCCGTTGGCCTCGTGTCGTGACGGAACGGCTGTTGTTGCGGCAGTACGCCGGTCAGCATGGCGTGCGGGTATTGCCATGCGCATGCCGCATCCAAGGAGAACGGCGGGGCGCTGCGCCGGGATGGCGGAGCGGCCTCGCGCGATTTGGGCAGCATGGCCTCGCT # Questionable array : NO Score: 3.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.29, 5:-1.5, 6:0.25, 7:-0.09, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 3501349-3502756 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIF01000003.1 Xanthomonas albilineans strain MTQ032 Xal-MTQ032-G1-Mol001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3501349 28 100.0 32 ............................ AACGCCAGCGGCCAGATATACAACTTCTTGCA 3501409 28 100.0 32 ............................ ACATGGCCCGGCTGCGGGACGCCGGCAACGGT 3501469 28 100.0 32 ............................ ATCTTGCTCTTGGGTGGGCGGCGCTTCTGGCT 3501529 28 100.0 32 ............................ TGACACTTAGTTAAGCTTTTCATGGATCACTC 3501589 28 100.0 32 ............................ CTACGGCGACGATCAGCGTCGTGGCTTGTGGC 3501649 28 100.0 32 ............................ ATTGCAAACTATCAAAGCGAGTTTTCTTCTTA 3501709 28 100.0 32 ............................ ATCGTACCTCGCTCAGGAGGTCGGCGATGCGA 3501769 28 100.0 32 ............................ TACGCAGACTGGGACGCGGCGTTCATGGAGGC 3501829 28 100.0 32 ............................ TCGATAAGCGCACGGCCAATGCCGGTGCTCTG 3501889 28 100.0 32 ............................ CAGCCCGCAACAGATCGAGGCCAACACGAAGG 3501949 28 100.0 32 ............................ TCGCTGCGCCATAGATTCCGGCCGTCCACGTC 3502009 28 100.0 32 ............................ TCCCATGCTAATCAGTCCCGTCTATTACCCAC 3502069 28 100.0 32 ............................ AAAGAGGATTACCGATGGCTCACGCACCGGGA 3502129 28 100.0 32 ............................ ATGCACCCTGCTTGTCATCAAGTCGCGGCAAG 3502189 28 100.0 32 ............................ GATGCGCCAGGCCATCGAGGAAGGCGGGTTAA 3502249 28 100.0 32 ............................ TTCTGCGCCGCAATCACAATAGTCTGCATGAT 3502309 28 100.0 32 ............................ ACAGCAGCAGTCGCGCAAAGCAAGCCGCAAGC 3502369 28 100.0 32 ............................ CATCGAAGCCGCACTTGCTCCTGATGCAGCGG 3502429 28 100.0 32 ............................ ATGTCCTGCGGCAGCAACGCGCCGATGGGGGC 3502489 28 100.0 32 ............................ CGGTGCTGCGCAAGTGATATCCCGGATCGTGA 3502549 28 100.0 32 ............................ TGGTGGCCGCATCCGCGCAGCACTTGCGCAGG 3502609 28 100.0 32 ............................ ATTAGAGCAATATATGTGCTTGCCATCTATGT 3502669 28 100.0 32 ............................ CGGCTGAGACAAGGCACAAGGAGCCGGTCATG 3502729 28 82.1 0 ......................TGTC.C | ========== ====== ====== ====== ============================ ================================ ================== 24 28 99.3 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CCCTGCACCATCTGATGGCAACCACCTGGCTGCATGGTGTTCGCGACCATGTGACCATCACCAGCATCGGTGCCGTGCCATCCGAGGCAGTGCACCGACAAGTGACGCGTGTGCAGGCCAAAAGCAGCCCTGAACGCCTGCGTCGGCGTGCCATGCGCCGACATGGGATAAGTGAGGATCTCGCCGTCCAACGCATTCCAGATTCGGCGGCAGAACAGTTGCGACTTCCGTTCGTCGTACTGGGCAGCCGCAGCACCGGCCAAACCGCGTTCCCGGTCTTCGTACGGCATGGCCCCGTACAGCAAGAACCCGTACCTGGCGACTTCAGCAGTTATGGACTCAGCCGGGGAGCCACCGTTCCCTGGTTCTGACCCTTTTTTCTTAAGACCAAACCCACCAAGGAAAAACAAACACTTAGCAGCCGCCCCAGAAAAAGGGGTTGGCTGCTTTTCTTTATGCGTTTATCTTTCAAGTCAAAGACTTGGATAATAGAACGCCTA # Right flank : CCAGCACTTTCAATCTTCATCTTCATGGCGTTGCGCATAGAAATTTGCTGCCGCCTCGATCAGGTAGGTATAGCGTTTCACCATCGCCTGCCAGGCCTGCGCCTCCACTTGGTGTTCGGCGTGGATATCCTCCGGCACCTCGCTGACCTCATCGATCAACTTTGGGACTTCGTGATTCCACCAACGCAGCATCAGGTCTGGCCGCTGATGCGTGCGAATCAGCGACTCCACCAGCGACTGCATCGCCGCGAATTGCCGCACCGTGCGAATGCGCTGGCCTTCCAAGAAGTGCGTGCGCTCCTGTTGCTCAGCCAGCGCCTCTTCCAGGGCATCCAGCCGCTGGCGGAGGTCAGCAGGCCCTCGACCGAAAACTCTCATGCGATTACTCCCCGCCCAGCGCGAGCCGGGGCACCTGCGGTGCTTTCAGCAACAGCTTCTTGAAGTAGCTGTCCTTGTAATAAAAAATCTTGTTGGCCAGGATCGGATAGCCAATGCCCTCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 6 3646975-3646827 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZIF01000003.1 Xanthomonas albilineans strain MTQ032 Xal-MTQ032-G1-Mol001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3646974 28 96.4 32 A........................... AAAGGCTGACTGGATGACCTGCCAAATAAGGC 3646914 28 100.0 32 ............................ TGGTTAGGGTGGGGCAGGCGCACTTCGCGAGC 3646854 28 89.3 0 ........................AGT. | ========== ====== ====== ====== ============================ ================================ ================== 3 28 95.2 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CTGGCGAAGAACGCCGTCGCTTTTTTTAGGATCTCGCGCTCCATCTTGAGCGTGGCGTTCTCGGCTCGCAGCCGGGCCAGTTCGCTCTCCATCTCACTGACCGGCTTGCGGCTGGGAGAACTCAGTGGCTGGCCGCCACGGGATGCGCCAAGCCAGTTGGCCAGCGTCTTGACCGACATGCCCAGTTGCCGGGCGGCTTTGGCCAGCCCGACCGACTCAGCCAGGGCGATAGCCTGAGCCTTGAAGTCGTCCGTGTAGCGACGACGGGTAATGCGTTGCATGGAAACCTCCAGGGTGCGATCAAAGTATCGCTTCCTGGCGTCCGTCCCTGCGGGGCAAGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTGATGAAAAACAATTTGGACAGATGCACAATGACAACGGTCATGGCATGCTCG # Right flank : ATGCTCGGGGCATCAACCGGCCCCGATCCTGGGTAGGGGGGTCAAATCCTTGCGATGCAATCGCAAAAGACCGCTCGCCCCCTCAATTTTTCTCGCGTGCAAAATGGAAAACTTTTTTTGGAAAAATCCGTGTCAGAGCTAAGCGCTGCAAGGGATTACAAGGCTGACTTGGCGCAGATCGGACAGATCGATGTGACGCCATGGACTGCGGCAGCGCACGCGGACATGACCCCAGCCGAACCCGTAGAACTGGAGCCCTATGCGCGGTCGTAAACCTCTGCCTGTGGCCATCAAGAAGATCAAAGGCACGCTACAAAAATGCCGAACCAACGCGCATGCGCCCCGCCCCGACGGGCAGTTGGGCCAGCCGCCGGAGTACATGTCTGACATTGCCAAGGAGGCATGGACCTATGCGGTAGAGAACGCACCGCTGGGTTTGTTTTCTTCCCTTGATGCCACGGTTCTGGAACGCTGGGCCAATTGCGCAGGTCTGTACCGTG # Questionable array : NO Score: 3.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //