Array 1 2012-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBTT01000007.1 Acinetobacter ursingii strain NBRC 110511, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2011 28 100.0 32 ............................ ACCCCAGTAAGCGGTAGTTTCATACTTTTTGG 1951 28 100.0 32 ............................ TGTTACACGTCCTTGTCGCGTGGGTAATGAGA 1891 28 100.0 32 ............................ TATGTCCGTGGCGGTCAAGACGCCGAGCGTGA 1831 28 100.0 32 ............................ TAAGGTTGTTTTATTGCTTGTTCCAGAATCGA 1771 28 100.0 32 ............................ AGTTGTGTTTGTAACTCTTCAACGGTTGGCTG 1711 28 100.0 32 ............................ TAAAAGTGTTACCAACATTAGGCACAAATTAC 1651 28 100.0 32 ............................ GCAAACAATCATGCGAACGGCTGATGAAGTGC 1591 28 100.0 32 ............................ AATGGCTTCATTTAATTCTTTTACTGAATCAT 1531 28 100.0 33 ............................ ATTAAGTGAGCGATACAAGTAACCATTTTCAGT 1470 28 100.0 32 ............................ CGCTAGAGAGCGAACGGGAGCTTGTAATCAGG 1410 28 100.0 32 ............................ ATTGCTCCAACGCTTGCAACGTATTGCTCAGT 1350 28 100.0 33 ............................ TCCACATAGAAGTTACCGCCAGCTGCTAGACCA 1289 28 100.0 32 ............................ AAGAGCATTATATTTTAATGACACCTTTCTAA 1229 28 100.0 32 ............................ AGATCCTGAACCTGCACCCCATCGAATCAAGC 1169 28 100.0 32 ............................ TGTTGCAATACCGCCCAACGATGTTGAAGCAG 1109 28 100.0 32 ............................ TTCTTCATCAAAAGTTGGTTCTGCAATGCTTA 1049 28 100.0 32 ............................ ATAGAACGTATAACCATTGGCAACTAAAGTTT 989 28 100.0 32 ............................ TGTTGCTCAAAAGGTTGGTGAACAACTAGGAG 929 28 100.0 32 ............................ ACTTAGCGATTGTTCCAGTTACTTTGCCAACA 869 28 100.0 32 ............................ ATTAGCCAAAAGTCTAATAATGTCTGCATAGC 809 28 100.0 32 ............................ TTATCTTGAATCGATTTTAGGCAAGTCAAACT 749 28 100.0 32 ............................ ACCAAGTAAAATTAACGATAGAAACAAGTACG 689 28 100.0 32 ............................ TATAATTGGTTTCTATGGGTACATTAAACAGT 629 28 100.0 32 ............................ TGTTGGTTTTGTATCAGTAAAAATTTTAACTC 569 28 100.0 32 ............................ CAATTTACCCTCTGTTTTGAGCTGTATTCTGA 509 28 100.0 32 ............................ ACCAAGTGGTGCAGATCGCCAAAGCTGTACAG 449 28 100.0 32 ............................ ATCAGGATCATCATCCGCTGTCTTCATTAAAT 389 28 100.0 32 ............................ GTGGTGATATTTGTCTAATGCCATGTGGCTTA 329 28 100.0 32 ............................ ACTTAATGTTTTTCCTATCTTTCTTAACTATA 269 28 100.0 32 ............................ GAACAAACTATTAAAACCCAATGGACCTATTA 209 28 100.0 32 ............................ TGCTGCTGAAACAGATAATAAACCAAAACATT 149 28 100.0 32 ............................ AGGTACAGACAATCTTCCAGGGCCACAGGACT 89 28 100.0 33 ............................ TGTACCAGACTGTCCTAAAATTAAAGTTGCAAT 28 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 34 28 100.0 32 GTTCATGGCGACATACGCCATTTAGAAA # Left flank : TGGAGCAACTGAATTTAACTCATTGGTTCGCAAGGCTGCAAGATTATGTACATGTCTTATCCGCCCGTAAAGTTCCTGAGGATAAGATCAACGGCTATGCTGCTTATTTTAAAGTTAATCCAAAATTGACGGTTGAGCAGCGTGTTGTTCATCAGGCAGAACGCCGTGGAATTTCAATTGAAGAGGCACAGGAACACTTTAAAGCATTAGATCTAACGGAGACTTTTGAACCTTATATCAATATGAAAAGCCAAACCAATGATATGAACTTCCGTTTGATTATTGGAAAAAAACGTGTTGATGAAGCAAATATTGGAAAATTTGGAAGCTATGGATTAAGTCGTACATCTACAGTACCCGAGTTTTAACCCAATATTTTTTACACTCTTTAACAGCTTAATAAAATCAATAAGTTATAACTTTGCTTTAAAACTTTGGGTATTTTATACTTTTTAGAGGTAAAGCACTGTTATAACTTTATTTTTTGCTTTATTCTTACT # Right flank : A # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGACATACGCCATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCATGGCGACATACGCCATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 252136-252644 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBTT01000001.1 Acinetobacter ursingii strain NBRC 110511, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 252136 28 100.0 32 ............................ CATAAATTTGACCAACCCCCCTAGCATTGCCA 252196 28 100.0 32 ............................ TTGACCATTTCAGCATTAAATAAAATCGGACG 252256 28 100.0 32 ............................ ACAACTCTATTCGTTTTAATCGCGGCCGTGAT 252316 28 96.4 32 ....T....................... TCTCTGTTGAGTCGTAAGATTTGATGTTAATT 252376 28 96.4 32 ....T....................... GACCCAATAACGATTTACTGTTTCGTCCATTG 252436 28 96.4 32 ....T....................... AGAAAAAAATTACCAATCTCACCTTAATAGTA 252496 28 100.0 33 ............................ AATGACATCCATTGCTTTAAAGTACCAGCATTG 252557 28 96.4 32 .T.......................... ACCGTGTTTACGGATAGCTACGTCCATTGCAA 252617 28 85.7 0 ...................A....TTT. | ========== ====== ====== ====== ============================ ================================= ================== 9 28 96.8 32 GCTTCCTATCGCATAGATAGTTTAGAAA # Left flank : CTTAAAAATTCAGCTTTTTCACTTGGTAAAAGTTTTGCATCCAAAATCTCGGCATCTGCGGCCCATTCTAGAGAAAGCGTTTGTAAAACTAGCGCAGAGCTTTCTGCAAAATAATCTTCGGTTCCCTGACCTAAATGAGCATCGTATTGACGTAATGCAGTCACTCCAAAACGAATAAAATCACGAATTGTTGTTAATTTTTCTGCGGCTTCCTGTAATTGTTCAGGATTAATGGTCGGTCGCTCCACTCAGGGGTCTCCAAAAGATGATGATGCAAAACGGCTTATGATACCTTGTTTTGTCTTGCTTTTTAATGCCTAAAGCGAGTGGATTCAATTTTAAATCAAGTTGACTTATTGCTCTTTTTAAATCAATATTTTTCTTGCTCTTTAATAATATAATAAAATCATACGCTTATGATTTAACTTGTTTTTAAAGCATAATATCAAATTATTAAATTAACTCATTGTTATTAAATGATTTATTAATAAGAGTTTATA # Right flank : ATTTTCGAGACTCCAAACATTTTGTTTTTAATTGCTGCATCGCTAAAGGATCCATTGGTGCAGTCATCATGGCGCGATAAGCCAAACATTCCTGCGTTTCTTCTGTTGCTTGAGATTTGGTATTCAAGGTATGACAACCCATCAGTCCAAAAGAGAAAATACATCCTAAAATAAATTTGATGAACATTGGATTTTCTATAACTTAGTATTTGCTGATATCAACTCAAATTTTAAAACGCAAAACAGCAAATAGAAACCTTTGAATAGACTTGTTTTATAAGTCCCTTTCATTCCTGCCTATGGAAGAAAAATAAAGAGGGTTTAAATAATGATGAAAGACGTCTAGTGTATAGATCTTTTAAAATTCGCTTATTTTCTTAAAATCTTCTGCCAATATATAAGCATTTTAAAAGATGAGCTTAATACAATGACAAATCCAGATATTCAAAAGGTAGAACTCGCAAAAGCCTATCGTTTACTTAATCATGGTCCAACTGTAC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCCTATCGCATAGATAGTTTAGAAA # Alternate repeat : GCTTTCTATCGCATAGATAGTTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: F [matched GCTTCCTATCGCATAGATAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.20,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 69656-61946 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBTT01000014.1 Acinetobacter ursingii strain NBRC 110511, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 69655 28 100.0 32 ............................ TTTAGCTTTAATTTTTGCACACTCGATTACCG 69595 28 100.0 32 ............................ TAATTAAAAAATGCCCCGAAGGGCATCCTTTG 69535 28 100.0 32 ............................ AATACCAGCAGTTGTATCCAAACTTTCAAAAT 69475 28 100.0 32 ............................ AGAATCCAAAAGGGCTTGAAGTTGTTTAGACT 69415 28 100.0 32 ............................ CACAACTAATGCAACAAACGTCCAGGCTTCTG 69355 28 100.0 32 ............................ TGATGGAACAGTAACAACTTGGTATAAAGATA 69295 28 100.0 32 ............................ TATAATTGGTTTTTTTGTTGTTCTGATTATTA 69235 28 100.0 32 ............................ TGAATGGTTGATGTAATCATTCGGATATCAGC 69175 28 100.0 32 ............................ AGTATGGCATATTGACGATGTATGTTCCTGAA 69115 28 100.0 32 ............................ TTTAAATCACGTTCAAAGATTTCTTTAGTCTC 69055 28 100.0 32 ............................ TGGTTTATCCGCTTCGGGATTAGGTAATAAAA 68995 28 100.0 32 ............................ AACAAAAGTGATCCCGTCAGGGATTGCTTTTT 68935 28 100.0 32 ............................ TCTAGCGATAAAGTCAACGGCACTTCATGCGG 68875 28 100.0 32 ............................ CCACACCCACCAGTGTTTCATCATCGCTTAAA 68815 28 100.0 32 ............................ TTTAGATACTGTAGCTCAACAAGTTATCTCTA 68755 28 100.0 32 ............................ GCCAAGCGACCAACCTCCTAAACCCGCTGCAT 68695 28 100.0 32 ............................ TATTATTTAAAATAGCCTAAGCAGATTTTTGA 68635 28 100.0 32 ............................ TCCTAAACCCGCTGCATTTGCAGCATTCATTA 68575 28 100.0 32 ............................ TATGATGAAATTTCTATTGATATCATCACAGA 68515 28 100.0 32 ............................ TACAATTAAAATCCGCCCTGGCTATAAGTTGA 68455 28 100.0 32 ............................ AAGTAAATCATTCTTGATGACCAACGATAAGC 68395 28 100.0 32 ............................ CTGAAGCTAAGTCATCGATGGCAACATTAATC 68335 28 100.0 32 ............................ AAACTGAAGCTGAATATTCAAAATCAAAATGA 68275 28 100.0 33 ............................ ACCAGTTACAGGGGGGATAGGCGGGAGATTGAT 68214 28 100.0 32 ............................ TTCTTGCACGATTGTTGTTTCTTCAACTCGGT 68154 28 100.0 32 ............................ TTTTATGTGATATTCAAAATTAAACATATTAC 68094 28 100.0 32 ............................ TTCCCACCAATGCGGATATAAGCCTGTTAAAT 68034 28 100.0 32 ............................ TGATGAATCACTCCAACCATTAAGTGTTAAAA 67974 28 100.0 32 ............................ AAAACCAAAGATTTCAAATAACAACTGATCAA 67914 28 100.0 32 ............................ GAGCGCGTACAGATTGGGCGGTAATGCCACGT 67854 28 100.0 32 ............................ AGCGACTGCAATCTCTTGAATAGCTTTGATGG 67794 28 100.0 32 ............................ AAATAGTTATCTATGTCTCTGATTTTGTTATC 67734 28 100.0 32 ............................ GATAGCATGGCAAATGCAGTTCGGTTAGTCCC 67674 28 100.0 32 ............................ TATCTTTGTGCTCGAACAATTCATGTAATTCG 67614 28 100.0 32 ............................ AGAATCGAAAGCACCACTTAATACACTCGACT 67554 28 100.0 32 ............................ TGGAATGGGAAATTTGGATGGTGTCGCTACGT 67494 28 100.0 32 ............................ TACGCAGTAGACATCGATGGCTTTGATTTTGA 67434 28 100.0 32 ............................ TGAAAAAGCAGCAGCACATTTTAAGTGGCTAA 67374 28 100.0 32 ............................ AATGCGACTCGTAGTTAGAACGAGCCGATTTT 67314 28 100.0 32 ............................ ATTTGTTTTTACCAATGCCCCTACAGACTCAG 67254 28 100.0 32 ............................ ATGCGCTGAGAACGTGCCAACGGCGATACAAA 67194 28 100.0 32 ............................ TGCAAGTCAATAGCAACTTGTGTGTAATGATC 67134 28 100.0 32 ............................ AATGGTTAATGAAAATAAAATCACGGCGGCGT 67074 28 100.0 32 ............................ TGGCACTTGTGTTTTTCGAGTAGCCATAAAAA 67014 28 100.0 32 ............................ ATTAACATCTGCATGACCATAATTCTCTAAGC 66954 28 100.0 32 ............................ AATGCAGCTTTAGACAATGAAGCCGCAATTCA 66894 28 100.0 32 ............................ AATGGAAGGAAAAATATTGGGATGAAAATCGC 66834 28 100.0 32 ............................ GCCCTTAGACTCAACAATCTCAACAGACTCAA 66774 28 100.0 32 ............................ AGAACGCAATGCCAAGCCAAAACACCGATCTA 66714 28 100.0 32 ............................ GAACGGCTCAACAGATATTCAATCATTACTTC 66654 28 100.0 32 ............................ ATGCGCTGTGCCACGTTTGCGCCGCTTACCCA 66594 28 100.0 32 ............................ TTTTCCGCCGCTGCTGCTGCATCGGCTTCTGG 66534 28 100.0 32 ............................ TTGAGTCGGACGTTGATGAATCCCACGAAAAT 66474 28 100.0 32 ............................ GTGGACGATTCCAGATGCGGGGGTTCGTACTG 66414 28 100.0 32 ............................ TAGAAAATCAAAAGGTGCGGGGCAGATCAATA 66354 28 100.0 32 ............................ GTATGGGTGTATTCAATGATTAGCGGGTGCGT 66294 28 100.0 32 ............................ ATCTCTACTTACTTCAATTATTCCATCGATTA 66234 28 100.0 32 ............................ TCAGCCATTACACTTAGATAAATGGAACGGCA 66174 28 100.0 32 ............................ ATAAAACCACAAATTTATAAATCATTTTATGA 66114 28 100.0 32 ............................ TCATCTCAAGAAGACATTGATGCTTCTTATTT 66054 28 100.0 32 ............................ AATGCGAATGCTGCGGGTTCAGGCATTGATGT 65994 28 100.0 32 ............................ GTAGTTGAGAAAAACGGAAAAACTTCACTTGC 65934 28 100.0 32 ............................ TTGAATGGGTAGAAATGCCCACTGTGTTACCG 65874 28 100.0 32 ............................ ATCAACTTAACTTCCGTGATCTGATCGTCATC 65814 28 100.0 32 ............................ TTAGTGATTGCATGTACCAAGCCAAAAAAGGC 65754 28 100.0 32 ............................ AATTAGTCAAATATTCAGTTGAAGCTCAAGAT 65694 28 100.0 32 ............................ TAAACACGTTTATAACTTGTATAAATCCACCA 65634 28 100.0 32 ............................ AGACTATCGCAGTAGCAACATATCCAAAAATA 65574 28 100.0 32 ............................ AGAACCTGGAGTCGCTGACAGAAAGTTAATCA 65514 28 100.0 32 ............................ TTGATGTGACTTACTCGGCACGTTTTAGAAAT 65454 28 100.0 32 ............................ TAAGTTATTTAGCATGATTGATCTTGGTGCTG 65394 28 100.0 32 ............................ ATGGGTGATGAAGCGAAAAAGATTGATGACGA 65334 28 100.0 32 ............................ TCCACATAACACATCTTGCACATATCAATGGG 65274 28 100.0 32 ............................ ATTTAATAAAACATCTGTTGCTATACTTTCTG 65214 28 100.0 32 ............................ CATTCTTTTTACGAATAGTTTTTAATTCATCT 65154 28 100.0 32 ............................ ATGCGCCATTGAGAAGCGTTAGGGCCTTGAAG 65094 28 100.0 32 ............................ AAGAAGAAGATCGACTGGTTTATTTGAGTAGA 65034 28 100.0 32 ............................ GAATAACCCTAAATACGCTTCATGTCTACCAT 64974 28 100.0 32 ............................ TCAAAGATAGAATCTGACAAATAAGCAATTTG 64914 28 100.0 32 ............................ CAGCGATTTAATAAATAAACTGCTGCGTACTT 64854 28 100.0 32 ............................ AAACTTTAATGCTAAAGGAGCGAGTTGTTCCT 64794 28 100.0 32 ............................ TGACCGTTTACACGCTCAGGGTTTAGCCTTCG 64734 28 100.0 32 ............................ AACCGCATCTACAACTGGAATACCTGCATTAA 64674 28 100.0 32 ............................ ACGATCAACCAATATCACACGACCACTAGCTG 64614 28 100.0 32 ............................ TTTATAATATCATTTTGGTTAGTACCACCCGA 64554 28 100.0 32 ............................ TAATGGTGAGCGTTGCCAAGCAACACTAGCTC 64494 28 100.0 32 ............................ ATGTAGCCGATGGAAATGCTGTATGAAATGAT 64434 28 100.0 32 ............................ ATAAGACATCCATTCAGTATCCTCCAAGTGAT 64374 28 100.0 32 ............................ ATAAATGGAAAGACTCGAAAAATGTTGAACGC 64314 28 100.0 32 ............................ TCATATCGGTTCACACACTGGATGAATTGCTA 64254 28 100.0 32 ............................ ACACAAAAGAGCAAATTATTAACGCTTTAAAT 64194 28 100.0 32 ............................ CAAGGCTTATCAACAGGACTACACAAAATAAA 64134 28 100.0 32 ............................ ACCAGGAGGACGCAAAAAAACCGACTGGAACG 64074 28 100.0 32 ............................ TGTTAAATCGACCAAGTCAGGTCTCATTCGTA 64014 28 100.0 32 ............................ ATTTGCCAAAATTCTCCATTTGTAGGTATTGC 63954 28 100.0 32 ............................ AAACAAGTCAGGAAAATAAAATGACATTACAT 63894 28 100.0 32 ............................ AGAATCGTGACCGTTTCCGCGGGCGTTTTTCA 63834 28 100.0 32 ............................ ATCACGTACGAACTGCACACCGCGAAGTGAAG 63774 28 100.0 32 ............................ AGTAACGGTTTAAACGCTGAAACAGTATTCAA 63714 28 100.0 32 ............................ AGACGCATTACTTGTAACACCAGATGAGTTAA 63654 28 100.0 32 ............................ GCTAAAAACACGGTAATTGACAACATTAGGGG 63594 28 96.4 32 ........T................... TCAATGAGTGAAAGTGATGCTTGATCAAATTG 63534 28 100.0 32 ............................ CAATTTTCTGGTCAAGATGCGAATGCTGTATG 63474 28 100.0 32 ............................ TTAACATGCGTTTAACGATGACAACTCCAAAC 63414 28 100.0 32 ............................ ATCACTGGTGATATCCACCAGAGAAGCATCAA 63354 28 100.0 32 ............................ CGATGCAAAACACAATAAACGCTCGTATTTAA 63294 28 100.0 32 ............................ AGTAGCATAGCCTTCTGCCATACACACAATTT 63234 28 100.0 32 ............................ AAGAGATTCATGCCGATGGTTTTAAGCCATAT 63174 28 100.0 32 ............................ ATGTGTAGGAACTTCGCTAGTTCTACACCACC 63114 28 100.0 32 ............................ TGTTTGCCCTGTCACTACACGATCAAGGGTAA 63054 28 100.0 32 ............................ GTATCGGAAAATGGGAGTGTGACATGCATAAC 62994 28 100.0 32 ............................ GGGCGCAAGAATAATGGGGTAGTTCATGAAGC 62934 28 100.0 32 ............................ TGTAGCATCGCCAGAAATTGAACCATCGGTCG 62874 28 100.0 32 ............................ TAGCCCCAGATAACTCCGTGCTGTATTGATCC 62814 28 100.0 32 ............................ CAGGACTCATTACCTGCTTATGATATTCTGGA 62754 28 100.0 32 ............................ ACGACGACCAGCCAATTCCATGTGAACAGTCT 62694 28 100.0 32 ............................ CATTTAATTGGGCCACGCTGAAACTGATACAG 62634 28 96.4 32 ....................C....... CGGTACATGTTTGGCGTGTACATATGATTAAC 62574 28 96.4 32 ....................C....... GTCAGAACGTGTAGAACCGATAAAACAATTGC 62514 28 96.4 32 ....................C....... TGCTTAAAGTTCCACTTAAAAACATTATTTTG 62454 28 96.4 32 ....................C....... CATTAAAAAACCCGCCGAAGCGGGTTTGTGTT 62394 28 96.4 32 ....................C....... AGTTTCGATTCCAGCGATCGACACTGTTTTGC 62334 28 100.0 32 ............................ AAGTGGAGTGGTTAAAGTAGATGCTGTTTTTG 62274 28 100.0 32 ............................ TTCAAATGTTGCTTCACTATCAACCCAAAAAC 62214 28 100.0 33 ............................ GATTACAAAAAAGCAAGCCGCGGAATATCTTCA 62153 28 100.0 32 ............................ GCGCATTCATTTGCAGCAGGTCTACGGATTAA 62093 28 100.0 32 ............................ AAACAATTCAAGCAAATGCAGCAGTTTAATCC 62033 28 100.0 32 ............................ TTTGGGTGATATGTTGTGGCATATACTGAAAG 61973 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 129 28 99.8 32 GTTCATGGCGACATACGCCATTTAGAAA # Left flank : AACTGGAACTTCACCCGCTTCGATTTGTT # Right flank : TGCAAACGATGTGTAAAAGCTTAAGCTGATTGATTCACGAGAGTAGAATATGGAATCTAATCGCCCGTAAAAATGAGTTAAAAAGAAATAATATAAACAAAAACGCACTGCTTCTGGCGAAACAGTGCGTTAGGTTAATAAGATTATGCTGGTAAATCGAACCAGATCATTTCACTATCTTCAAGTGCATGAATCGTAGTTTTCTCATCAAACAATAAAGCATCACCTGCTTTAACAATTTGATTCTCAATCATAATTTGACCTTTAATCACATGCACATAATTGTGTTTTTGAGTTGCAGCAATCTCAAGTGTTTTACCAGCTTCTAACACAGCCGCTTTCACTTCTGCATTTTGGCGAATATGCATAGCAGCATTATCATTTGGTCCTGCAATCAAGTGCCATTGGTTTGGCTGTTCACTTGGATCAAGTTTGATTTGTTGATACGTTGGTTCAGCATCGCGTACATTTGGATGAATCCAGATTTGAAATAGATGCAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGACATACGCCATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCATGGCGACATACGCCATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //