Array 1 180695-179323 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAMJ01000010.1 Salmonella enterica subsp. enterica serovar Newport str. CVM21537 contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 180694 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 180633 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 180572 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 180511 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 180450 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 180389 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 180328 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 180267 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 180206 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 180145 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 180084 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 180023 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 179962 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 179901 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 179840 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 179779 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 179718 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 179657 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 179596 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 179535 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 179474 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 179413 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 179352 29 100.0 0 ............................. | A [179325] ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 198550-197364 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAMJ01000010.1 Salmonella enterica subsp. enterica serovar Newport str. CVM21537 contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 198549 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 198488 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 198427 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 198366 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 198305 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 198244 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 198183 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 198122 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 198061 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 198000 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 197939 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 197878 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 197817 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 197756 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 197695 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 197634 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 197573 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 197512 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 197451 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 197391 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //