Array 1 8839-6210 **** Predicted by CRISPRDetect 2.4 *** >NZ_VBUE01000021.1 Aliarcobacter cibarius strain DSM 17680 NODE_21_length_31127_cov_23.117484, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 8838 37 100.0 41 ..................................... AGACTCTGTAGCTGACTCATAGACTTCGTTGCTACAATTTT 8760 37 100.0 39 ..................................... TTGAATAGCTTCTTGAACATCTGTTTCGTTTTTAAGAGT 8684 37 100.0 33 ..................................... TTGCTTGATAAGATTTTTTCCCTATTTTAACAA 8614 37 100.0 39 ..................................... TGATTAAAGGTTCTCTTAATCCAGTTATGCTTACAAAAA 8538 37 100.0 35 ..................................... TAGATCAGCTTTTTCATAAGCTATTGGGTTATTAA 8466 37 100.0 36 ..................................... TCTTAAGTTCATTGCCAAATCGAACAACTAAATTAT 8393 37 100.0 37 ..................................... AAACCATAATTGAAATTCTTATACTTCCATTTATGCT 8319 37 100.0 42 ..................................... TATGTCCCAGTTAGTTAGAGACATATTGTAACAATATTTTGT 8240 37 100.0 37 ..................................... GTCTTTCACCCCACATGTTAATAGAAGAAATTTCTTC 8166 37 100.0 34 ..................................... AGTAATTCAAAATTATTTAAGATTATGTATAATT 8095 37 100.0 37 ..................................... TTTACAGATATCGTTTCCGATACCTGCACAATTCTAT 8021 37 100.0 38 ..................................... TTTTTCAGCATCTTCTTTTGTTAAAAATTGCTTTATGA 7946 37 100.0 38 ..................................... TAATCTCTATAGCTGTAGAACCTGTCAAGTCTTACTTC 7871 37 100.0 37 ..................................... TATTTAATAATAGGTGGATTTTCCGCTCCATTGATTT 7797 37 100.0 34 ..................................... ATTGGTTCCTCTGAAAGATCCATTTTAGCTGTAT 7726 37 100.0 36 ..................................... CTTTCACCCCAAAAACTAATAGAAGAAATCTCTTCT 7653 37 100.0 37 ..................................... CTTGATACTCAACTTGAGGTTGATGATTGCCTTGATT 7579 37 100.0 39 ..................................... AGCTCAAAAAGAACTCTTTGGATCTCCTTCGCATCAATT 7503 37 100.0 36 ..................................... ACATTCATCTTCATTCATTGTCCAGTCATCAAGATG 7430 37 100.0 37 ..................................... AATTCTTCCTTCCCCGAAGAAACACTTCTCTTCTCTA 7356 37 100.0 34 ..................................... CACCTTCGTAAATTGTTCTATTGTATCGATCTTC 7285 37 100.0 38 ..................................... GTAGAATCTATCTAATAACAGATTTTCCATTTTTCTAT 7210 37 100.0 40 ..................................... AACGCTTGATCCACCACTATAACCAGTATAATTAAAATAA 7133 37 100.0 40 ..................................... AACGTGTCTTTTGTGAGCACACAAGGTCTTTCTGAGAAAG 7056 37 100.0 36 ..................................... TGGTATTTACCACTTCCTATTTTTAATAATGTAAGA 6983 37 100.0 36 ..................................... AAATGTTTCGTTTTGTAGGATTTCCACATTCCATAC 6910 37 100.0 40 ..................................... GATGAGGATCTCTCCTCCTAAATCTTTTTTATACTTAATT 6833 37 100.0 37 ..................................... CTTGATACTCAACTTGAGGTTGATGATTGCCTTGATT 6759 37 100.0 36 ..................................... ACATTCATCTTCATTCATTGTCCAGTCATCAAGATG 6686 37 100.0 37 ..................................... AATTCTTCCTTCCCCGAAGAAACACTTCTCTTCTCTA 6612 37 100.0 34 ..................................... GAAACTTTTGTGAATTGCTCAACACCTTTGATTT 6541 37 100.0 41 ..................................... AACACTCTTCTTTTATATCTTCTATTGAAGAAGAATTTACT 6463 37 100.0 33 ..................................... CTTTTTGGCAATTGTTGATTTGTTTTTGCTAGA 6393 37 100.0 36 ..................................... ATCCAAAACCTAATGCAGTTGAAGTTAATTCAGTTG 6320 37 100.0 37 ..................................... AAAAAGGGCTCTTTGGATTTCTTTTGTATCTATACCT 6246 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ========================================== ================== 36 37 99.9 37 ATTCAATACATATGACCCGATTTAAGGGGATTAAGAC # Left flank : TCTAAGATTTTATCATGTTTGTGAAAACTGTGTTCCAAAGTCATTTGAGCTTTGTAATCGTGAAGAAACCTTTGAAAAGAAGGAGTATTTTATATAAAAACGATTTGCGAACTTTTTTTAGTCATTTTTAGGGCTTTTTGGTTAATATTCACTTTTAAAACTTCGCAAAACTACCTTTTGCATATATTCAAGTTTTAGGTTTGCGAACTTTTATTTTAATTTAAGATTTACATATCGATTTTACGGTACTTATGAAACTTAAGTTAAGCTAAAAATTAGAGAATCTCAACTTTTTAGTTTTTATACAAATGATTTGCGAACTTTTTTTACAAACAAAAGTCCATGAAATCGAGATTTTTTAAAATTTAATGTCAAAATACTAGAGTTGCATTTTGGAAAATGATATACATTTGCGAACTTTTTATATAAAATACCACAAAATCGTACTTTTAAGTAGATTATGTGTAAAATACAAATTATGAAAAGCCAGATTGATGGTT # Right flank : GGAAAATAAACCATAACCTGCATAAATGAGTTATATAATTCAATACATATAAACCAATCTATTTTTCGTTGGAAAAATTTCATTAACACTAAAGTTTATGAAAACACTAACGCTTATTTTTAACTTTAGGATTGAGAAGATATGTATTACTACATCTCTTTTCTCAAAATTTCTTAATTTCATTTCAAACTTTTTCTTCACTCTTAAATTCTCAAAAAACAAATCTAAAACGACAATATTTGTCAAAAATAAAAACTAAAATTCCTTTATAAATTAAAAAATATAAAGGACAAATATGAACAAAATTATTTCTAGTGCACTTTTAGTAGGTGTCTTATCTACATCATTGTTTGCTGATTGTAAAGTATTGAATTTTGGAGAAGTAAACCAAAATTCATATAAAATTTTTGGCACAAATGAGAATTCAAAAGTAGTGAATTATCAAGCATTTTCTGCTTCAAAACCAATTGTATATAGAGATTTGGAAAATAAATATCAGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCAATACATATGACCCGATTTAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 22499-24453 **** Predicted by CRISPRDetect 2.4 *** >NZ_VBUE01000021.1 Aliarcobacter cibarius strain DSM 17680 NODE_21_length_31127_cov_23.117484, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 22499 37 100.0 38 ..................................... GAGATTATTCTCTTATAAACAAAATATTAACACAATTA 22574 37 100.0 39 ..................................... TCTCATTGTCAAAATGAGATATTAATTCAAGGGCAATAT 22650 37 100.0 34 ..................................... AATTTAAGAGCATCTCTTTATCATCAGTATATAC 22721 37 100.0 36 ..................................... AGATTGATTTCTAACACTTGGAAAGTCGCGTGTTCG 22794 37 100.0 39 ..................................... TCTTCTGCAGAGCTTTCTGCAGAAACTTTAGCAGCCTTA 22870 37 100.0 34 ..................................... TCACCCCACATTGTTACAGAAGAAATTTTTTCTT 22941 37 100.0 38 ..................................... TCTTTCACCCCACATGCTAATAGAAGAAATGTTTTCTT 23016 37 100.0 35 ..................................... ACCAAGCCATCTGGCTCGATTACTATTTTATTATT 23088 37 100.0 37 ..................................... TTCATTTTCCAGAACGATATCGTTCTGAGTTAAATTT 23162 37 100.0 36 ..................................... AACACATATTTGCTCTTAACCATGATAACTCCTTTA 23235 37 100.0 33 ..................................... ACGTAGGTAGGGACGTTACAAATTGACCAGAGG 23305 37 100.0 35 ..................................... AAGAAAGGGCTTGGTTCCCCCTACTATTTAATAAT 23377 37 100.0 37 ..................................... AGTTAAATCTAAACCTACTAAATCAGTTATTAAACCA 23451 37 100.0 41 ..................................... ATCCCGATACATAGATGTATATATTAATATACTTATAAGTA 23529 37 100.0 39 ..................................... GTAATACGGTACAAATTTGAAGCTTCCGTCTTCTTGAGG 23605 37 100.0 37 ..................................... CAATATTGTGATCTGCCTTGTTTGATTTAATCTTTGG 23679 37 100.0 46 ..................................... TTTCTTTGCTTGTAAACAAGCAAATAAAGCTTCTTTATCTGACCAG 23762 37 100.0 33 ..................................... AGTTTCTGAATGAAAATGTATATTATTTGATTG 23832 37 100.0 39 ..................................... TTTCTACCATTTCTGGTAGAACATTCTCTTCAACCCACT 23908 37 100.0 35 ..................................... TAACACCATCGATGTATACTTGCTGACCTTTTTTC 23980 37 100.0 39 ..................................... TAAATCATACGAATCAGCTGCTACACAAATTGATCTTAG 24056 37 100.0 36 ..................................... TCTTCTTCACAATCATCCTTGTCGTAGTTATAATCA 24129 37 100.0 35 ..................................... AACCACGCCAGATGGCTCGATCACCATTTTTTCTG 24201 37 100.0 35 ..................................... TTCAGACGACCACTCTCTCATTTCTATGGAAGATG 24273 37 100.0 36 ..................................... AGCAGAAGCACCAGATCCACCAGCAGGAGCAGAAGA 24346 37 100.0 34 ..................................... AAATCAAATATATCTACAATATTGCCAGTTAAAT 24417 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 27 37 100.0 37 ATTCAATACATATGACCCGATTTAAGGGGATTAAGAC # Left flank : TTTATCATAAAAAAGATAGACAATGCTATCTTTTTTAAACTTAAAATTGATAATAAAGTGTCTAATATAAAAAAACTATTACGATAATTTCATATAAAAACGATTTGCGAACTTTTTTTAGTCATTTTTAGGGCTTTTTGGTTAATATTCACTTTTAAAACTTCGCAAAACTACCTTTTATGTATATTCAAGTTTTAGGTTTGCGAACTTTTATTTTAATTTAAGATTTACATATCGATTTTACGGTACTTATGAAACTTAAGTTAAGCTAAAAATTAGAGAATCTCAACTTTTTAGTTTTTATACAAACGATTTGCGAACTTTTTTTACAAACAAAAGTCCATGAAATCGAGATTTTTTAAAATTTAATGTCAAAATACTAGAGTTGCATTTTAAAAAATGGTATACATTTGCGAACTTTTTATATAAAATACTACAAAATAGTATTTTTAAGTAGTTTATACGTAAAATACAAATAATGAAAAGCTTAATTGATGGCT # Right flank : CTTTATGGAGCACATGGCAAATTTATTGAAAGTATTAGGGATGAAAATAAAATATTTTTCAAAAAAGATCGAGCAAAAATAATACAAAAATTTAAAAATGGAGAGTTGGCTTTTAAAGAAACTGCTTTAGGTGCTTGTGTAACAATAGAGCCTTGCAATGAAAGCTTACTTGGTTCTATTACGGCATGTATAGATTGTGCTTTTGCTGTACATAAAATATCTAAGATAGAAAAATTAATAGATGAACAAAACTATCTAATCAATGTACTTGACAAAAACTCTGTTGAATATAGAACAGAAAAGCTTGAATTAGAGAAATTAAAAACATTTTTAAAAACAGTGAGTAAGGATTGAATAAATGGAGAATATAAATAGTACATTAGAAGAGTATTTTCAGGCTCTGGAAAGATTAATAAAAAACAGACCAATAAATGTTCCAATGAATTCAAAAATCAATAAGGATACTGTAGCATTAGAAGCAGGTAGGAAAGGGGCAGCAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCAATACATATGACCCGATTTAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //