Array 1 302488-300950 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETZE010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SARA2 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 302487 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 302426 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 302365 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 302304 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 302243 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 302181 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 302120 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 302059 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 301998 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 301937 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 301876 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 301815 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 301754 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 301693 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 301632 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 301571 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 301510 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 301448 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 301345 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 301284 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 301223 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 301162 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 301101 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 301040 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 300979 29 96.6 0 A............................ | A [300952] ========== ====== ====== ====== ============================= ========================================================================== ================== 25 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 320601-318620 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETZE010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SARA2 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 320600 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 320539 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 320478 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 320417 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 320356 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 320295 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 320234 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 320173 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 320112 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 320051 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 319990 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 319929 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 319868 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 319807 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 319746 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 319685 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 319624 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 319563 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 319502 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 319441 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 319380 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 319319 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 319258 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 319197 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 319135 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 319074 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 319013 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 318952 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 318891 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 318830 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 318769 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 318708 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 318647 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //