Array 1 183-990 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKXX01000019.1 Pseudomonas aeruginosa strain Pae113 NODE_19_length_122392_cov_23.0292, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 183 28 100.0 32 ............................ GCTAGTTCGTCAGCAAGAAGAGCGGCCCGCTA 243 28 100.0 32 ............................ TTGCTGGCGCCGCCGGTGAGCTTCGCGTACTC 303 28 100.0 32 ............................ AAATAAAGAGTGCCTTTCTTACTGCTGATCAA 363 28 100.0 32 ............................ TGGTCGTCTCGCAATCCGCCTCGGCCGCTGGC 423 28 100.0 32 ............................ CGGTAGAGACGTCGGTGAGCGCTGCGATCTGC 483 28 100.0 32 ............................ GCAATCGATCAGGCTATGACCGCCGAAGCCTA 543 28 100.0 32 ............................ TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 603 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 663 28 100.0 32 ............................ TTGAGGAACAGGCGCGCTACGTCCGCCGCGAA 723 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 783 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 843 28 100.0 32 ............................ TCGCGCAATGATTTCAGCCGCGGAGCGCATAG 903 28 100.0 32 ............................ ATAGATAACACGTGTGACCGCGACCACTACCG 963 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 14 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 183-1110 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKXX01000028.1 Pseudomonas aeruginosa strain Pae113 NODE_28_length_65693_cov_20.0762, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 183 28 100.0 32 ............................ ACTGGGCTTCGCGGGAGAGGCTTCCAAAACTT 243 28 100.0 32 ............................ ACCACGAACGAACAGTTTTTTCAGGTTTTTCA 303 28 100.0 32 ............................ ACAGTCGGTCATCTTTCACGCGACAAGTAATG 363 28 100.0 32 ............................ GGCCAGTCCGTGCCGATTCCGCCGGCGTGGAG 423 28 100.0 32 ............................ TGGACCTGGCAAAGCTGGAGTGGGCGCGGCTG 483 28 100.0 32 ............................ TGGACGGCAAACAAGATCGTAGGGCGCTGCCC 543 28 100.0 32 ............................ TGGGCGTCAAGGCCGTACTCGACTTCATTAAA 603 28 100.0 32 ............................ ACTGACGACCGTCACGCTGACCCGACCGGAGA 663 28 100.0 32 ............................ ATGTCCCGACCGTCGCAGGCCGTCAGCGCGTT 723 28 100.0 32 ............................ GCCCTGGGCCGCCTGGTCGAGCCGACCGATGT 783 28 100.0 32 ............................ AGGTCAACGACCAGCGTCGGAGCCTCGGGCTT 843 28 100.0 32 ............................ TGGGACACCCGACGCTGCGAGACGCTTGCATA 903 28 100.0 32 ............................ ATCGCCGGCATGAACGAGGCGCATGCGAAGTT 963 28 100.0 32 ............................ TGGCCGTAACCCGTGGTCAGGCTGAGCGGCAC 1023 28 100.0 32 ............................ AAGAGGAGCCTGAACATGGCCCAAATTTCTAA 1083 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGAGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCTCCCGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10743-9635 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKXX01000028.1 Pseudomonas aeruginosa strain Pae113 NODE_28_length_65693_cov_20.0762, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10742 28 100.0 32 ............................ ACTACCCGCAGGACGTGCTCCAGCTCCGCGAC 10682 28 100.0 32 ............................ TTTGCCGGGTCACACTGCCCGGACCCGCCACC 10622 28 100.0 33 ............................ CAGGGCGCGCCCGGAGAAAGTCACGCGCTTCGA 10561 28 100.0 32 ............................ TCGGGAAAGAGACCATGACCATCGGTGAAAAC 10501 28 100.0 32 ............................ ATCCGGGCCTGCGCAGATCACCCGGCCAGCTT 10441 28 100.0 32 ............................ AGGCACTGCAGGCCTACCGGCGTACCCTGCGC 10381 28 100.0 32 ............................ ACGTCAATGCAGAACTCGAACGTCGTGTGCAT 10321 28 100.0 32 ............................ ACCCAGTGAAATCAGTCCCCGCGCTCGTATCG 10261 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 10201 28 100.0 32 ............................ GAGATCATCCGGCGCAAGCGGGAACAGCTGCT 10141 28 100.0 32 ............................ TCACGACCTTCTCGAACGTTCCCAGGTACGTA 10081 28 100.0 32 ............................ AAGGTCAATTCCCAGGTGAAGCAACTGGTGGC 10021 28 100.0 32 ............................ GTAGCAGAGAAACTCAACAGCCCGACTGGACG 9961 28 100.0 33 ............................ GTAGGGATTGTGAGCGTCGAGGAGCGCCAGGGC 9900 28 100.0 32 ............................ TGCAACTCGAAAACATCGAACGCCGGCGCCGA 9840 28 100.0 32 ............................ CTGAGCTAACCCGGCTGGGATCCAAATCCTAC 9780 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 9721 27 92.9 32 .....................A..-... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 9662 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 19 28 98.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTAATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 34666-33711 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKXX01000013.1 Pseudomonas aeruginosa strain Pae113 NODE_13_length_202393_cov_28.2285, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 34665 30 100.0 36 .............................. ACAAGTAGCGGCTCGTCGGTAGCCCAGTTCCCGCGT 34599 30 100.0 36 .............................. GCGCGATCGTCGCTGCGCTAGGCTGGTCTCGAAGGT 34533 30 100.0 35 .............................. TCCGTCAAGGAGCGATGGGTAGATTTCGATCACGT 34468 30 100.0 35 .............................. AATACATCCATGCCAACGGAATCGGCTACCTCGGT 34403 30 100.0 37 .............................. TGTGACTAAGTGGCTGCTCGTTGCAGTGGGTGTGCGT 34336 30 100.0 36 .............................. GCGCTCATGCGTGACAACGTACAGCAGCACAGCAGT 34270 30 100.0 37 .............................. AACCCGGGCAACTACGTGGCTAAGTCGGAATATTCGT 34203 30 100.0 35 .............................. CTTCGCGCTGGACGAGAACAACGCTCCTCTCTAGT 34138 30 100.0 36 .............................. CCTGGAGAGGCCAGCAGGCCGACATGATGATCGTGT 34072 30 100.0 36 .............................. ACCTGCTCGAGTTCGGCCTGGTGACTCTGACGTGGT 34006 30 100.0 36 .............................. TTGAAGCTCTACGGATCCTTCGGCCTCGAGAACAGT 33940 30 100.0 37 .............................. ACGAACACGGTTATCACCGGCGACGGTAACAGCGTGT 33873 30 96.7 38 ...............T.............. AGCCCCGGCCAGGTCGTAATGACCGCAGCCGGTGAGGT 33805 30 90.0 35 ...........T................CA ACTGCCGTTGTCGCGTGACGGCTATCAGGGAATGT 33740 30 83.3 0 .......TA.G............G.....G | ========== ====== ====== ====== ============================== ====================================== ================== 15 30 98.0 36 CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Left flank : CATTTCTGTGGAAGTGAGGTGGCGACATGATGGTTCTGGTCAGCTATGACGTGAGCACTCAAGATGCTGCAGGTGGCAAGCGCTTGCGCCGCCTGGCCAAGGCCTGCCGCGATTATGGTCAGCGAGTGCAATACTCGGTGTTCGAGATCGAGGTAGATAGCGCGCAGTGGACACTCCTTAAGCATCGTCTGTGCGACCTAATCAATCCGGAACAAGACAGCCTACGTTTCTACTACTTGGGCACGAACTGGCAACATCGTGTGGAGCATGTTGGGGCCAAGGTTGTACTCGACCTAAATGGCCCGCTGATTCTTTAGCGTCGGCGCGAACCTAAAGCGACCGACCCAACCCTGAGGGGTTCGCAGCTCTCTAGCTGATTGATTTATCTACTCTTTTTTTGACGTTAGCAGTTTGATGGCGCGCGCCTTGCCTAAATAAGGCATGTTTCGCTGAAGTAAAAGGTTTTTTTCATGCTGATCAGTAAGTTATAAGTGGGCGGT # Right flank : ATGGATTTTTGGGAGTTTGTCCTGAAAAATTTTGTCTCGCCACTCTCTTCCCGGCTCAGAGCCTGGCCAGGAACTCTTGTGTCACAGTGTCGCGGCCCCAAGCCGAAAGAAAGACCAGGTTGCGCTGCTCGTCGCACACGCAGGCGTCGACGTACAGGTCTGGGCACTCTTCGATCTGGTAGAGCGGGGTGGGACTGGGCATAGGAACCTCCTGGAAGGAGGAGCCACGCCGCCCTCGAGGAGCGGTGAAGCCCCTCGGGGTGTGGTCCAACTGGTGCAGGGGAGCGTGGTGGTTACCGAACGCTCTTGGTGTGAGGGTCGAAGCTGAGCCCATCGGCTTGGTGCAGCGGCTCTTGGCCGATCAGGAAGACCTGGCAGAGGTACTGATTGCGTAGCGCGACAGCCGCTTCCGCCTGCTCCAAGGTCAGCGACAGCTCCTCGATGAACAGGTCGATGAGCTCGTCGTCGCCGGCGACGTCGTTGTTGGACAGTTGGTCCTC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //