Array 1 157641-156532 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZCU01000003.1 Lactiplantibacillus pentosus DSM 20314 Scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================================================= ================== 157640 28 100.0 33 ............................ TGGTTACGATGATTTTATTACGAAATTAACGGC 157579 28 100.0 33 ............................ CGAATCGCGTCATGCATTTGACTAACTACGATA 157518 28 100.0 33 ............................ CATTCTTAAACAAATAACCGTTAGGAACTGCTT 157457 28 100.0 33 ............................ TAACGTCGGTGTCGACAAAGCTGAACGCTTGAC 157396 28 100.0 33 ............................ CTGGCTCAATGATTATTAAATTCAGGCATTACA 157335 28 100.0 33 ............................ TCATCAGGCCAATAGCGGCGTTAAGTGCCAACG 157274 28 100.0 33 ............................ CACGAACAACCAGCCGCAGTATGACCCTGAGGA 157213 28 100.0 34 ............................ CTTTTTGGCAAAACAAAAACCCACCATATCAATG 157151 28 100.0 33 ............................ CATGTGGTTGGCTGTCTCAAAAGATAAGTATTT 157090 28 100.0 33 ............................ TGTTCGAAACGGCATGAGTTTGACTGGATTAGG 157029 28 100.0 33 ............................ TAAGGGCTTAACGGGTTTTGCAGATTCTCAATC 156968 28 100.0 33 ............................ CAAGGAGCGCATGGAGTGGATAAAGTTTTTTAC 156907 27 92.9 137 ..A..................-...... TATTACTGCGTCCCGATGGCAAATTATTGAATTTATTTGGATCATACCTTATAGTCAAAACACTAGCACTTCGACAAGTTGACCCAGAACAGTCATTTTTATATTTTGGATTGTTGATTTACCGGCATTTGATTAGT 156743 28 85.7 33 ..A.......T.C..A............ CAACAAGCCCTAATAACACAAGTACCCGGTTCG 156682 28 85.7 33 ..A.......T.C..A............ CTCGGTACCATCCGTTACATCAATGACGACAGG 156621 28 85.7 34 ..A.......T.C..A............ CCTCTAATTCATTGTTTACAATCAGCCACTCATA 156559 28 85.7 0 ..A.......T...............TT | ========== ====== ====== ====== ============================ ========================================================================================================================================= ================== 17 28 96.2 40 CTGTTCCCCGCGTATGCGGGGGTGATCC # Left flank : AATTATTTGTGCGTTGCTGATTGAAAGTAGCTTTTTGCCTGCAAATTTAATGCGTATTTAGGCTTCACAATTATTAAGCGCTTACATTTTATTAAGAACATTGCTGACAATCCTGAATTATACTGACAAGAGATCATCGACTTTCATCCGTATATTTTCGTCAGAACCCTAAACTGCTTGTAAACGCTCCCGACTTTTAAATATAATTCCCCTACATTATCATACTGGCTATTCATCAACAATTCGCTTTATGTTATCCCACTTACTGGTTGAATTATTTCTGATTCTATACTTCTAATATTAGCATTCAGTGTTTGAATATACATCTATTTTCGGAAGGACTTTGATGGATTTTTGATAAATTATGACGACTAGTTTGTGTCAAGACAGTCTGATATGTCCAGTCTTGGAGTTTCCCTATAGTTGCTTTCAACGATCAAGTTAATGTAAAATGATACTTAGCCAATTTTGGATTGTTGATTTACCGGGATTTGTTTAGT # Right flank : TTATACAGTTTTTAGGAGGACAAGGATAATGGTTGAAATTATCGCGCATGTTTTAATACCAACCAATCGAGGATTTTTGATTTTACAGCGTACCCGAAAAGAATACGGCAATAAAAATGTATATCCCGGATACTGGGATATTCCTGGTGGTTTAGCCATCAATAATGAGATTCCAAGAGAAACAGCAATTCGGGAATGTATGGAAGAAACTGGGTTAAAGGTGAAAATTAGCAGAATTATCTGGGAAAACTCAGTTTTTGATACAGCAAAAATGCGCGTGTTTACAACATTAGTTTATCTGGCACATGAGATATCAGCTGATCAGAAAATTTATCTAAATAGAGAAGAACATTCTGAATTTATTTTTGTAAATTCACGGCAAACTTTGAATAAAGTAAAGGTTGTACCGTATTTAGAGAAAGTACTGTTGCAGTTTCTATAGATTAGGGAGGGTTGTACGGTGATAACTATACTTGAATACGCATAGAAAGAATTTATAA # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.58, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 160836-160259 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZCU01000003.1 Lactiplantibacillus pentosus DSM 20314 Scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 160835 28 100.0 33 ............................ TGGATATTGGATTGCTACTGGTACTAGCGGCGA 160774 28 100.0 33 ............................ TTGTGCTAGCACGCAATTAATTAGTAGGTCTAA 160713 28 100.0 32 ............................ TGCGTTGCCATTTTGGTGAAGTTTGCACTATT T [160687] 160652 28 100.0 33 ............................ TCAAAATGCCTCAGCCACGGGCGGGAAATACTC 160591 28 96.4 33 ..A......................... TACTTGCTGTATTCAGACGTTTGCGCGTTCACA 160530 28 96.4 33 .................A.......... CAAAGTCGCTGATCGGTATGATACCAAAGCACT 160469 28 100.0 33 ............................ CGGGAGAACAAGCTTGGTATTACAAGAACATCG 160408 28 92.9 33 ..A............A............ TTAATGATGCGATATACGGGCAGCTTCACATTC 160347 28 89.3 33 ........T.......T.A......... TTAGTGACCGATTGACATTCCTATATTTGGAAC 160286 27 82.1 0 ..A............A......C-...T | G [160262] ========== ====== ====== ====== ============================ ================================= ================== 10 28 95.7 33 CTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : TATTAGACTGCCGGGGTATTTATAATTCATTGCACACTAATTTTCGCCACAACGCTAGTAGCAGGAAAACTATTGAAAATCGCTTATCCGGCGTGAAATATATGGCTAGTTTGATAAGCTGGTATATATCCATCTTTAAAATCAGAGTAATACCGGATGCTCCCCCCAAAAAATATTCGTTAGTTATTCATTACTACAAACGCTCAATCAGTAAGACCGATTAATTTGCGGGTAGCAAGCTATTGGATTGATTTTTTAGAATTCTGGAGATAGGTCAAACATTCACGCCTATTAAACGTGGTTATAATCATGTATATCTTATATTAACATTTAGAAATCAGAAAATCATCTACAGATTTGTTGCGTTTCATTGCAGACATTCATCTTGCTTGAAATCCCAGTTTCTTGTATAGTCCTAGTTGTAGATGTCAATTCAGCAAGCTGATTTAAATTTCGGATTTACTGATTTCATATTGTTGATATGACGGGATTTGTTTAGT # Right flank : TGTACCGATTCATGACATAATCAGCATTGCTATTGTCTCTAACACATACAGGACTATTTCGGCATTTATACAGAGCGATGAACAGCATTATTTCATCAACAGGGCAATTTAACTTCTATGAGAACCAATGGCTAAAATTTTAAGTTCACACCACCAATCTTCCTTATGAATCAAACTTCCATTACACAAATAGTGTATCTCTCAGATGTGTTCTAAATTTTTAACTTTTCTACCTTACTCAATGCCTGAGCTAATGCCAACGTCGCCCGAGCATCTTCTAGCGCATGATGTGGTTTTAAATTTTCAATTTCGTATGCTGACAGTACTGTCGCGAGTCGATAGTTATCTAGAAACGCATTGGTACGCTTCACAATTGGCATCAAATCAATGGGTTGACTTCTTAACGCTTCCAAATTATTGCTGATAAACGCCTGCTTTAAGAAGGCCTCATCAAAATGAAAATTATATCCCACGATTGCGCAATCACCTATGAAAGCATT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 67544-68238 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZCU01000007.1 Lactiplantibacillus pentosus DSM 20314 Scaffold7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 67544 36 100.0 30 .................................... AAAATCATTTGTAAAGTTCAATGGCTTGTT 67610 36 100.0 30 .................................... GACGCTAACGATCGCCCAACTAAGGTATGG 67676 36 100.0 30 .................................... TTACCCGCTTGCATGGTACAATAGGAACAT 67742 36 100.0 30 .................................... GGCAGCGGACGGATGGTCTGCACCTGCGCT 67808 36 100.0 29 .................................... GGAACGATGGGGAAATAAAGGTTCGCGCC 67873 36 100.0 30 .................................... AAGAGTATCAGGATGCCCTAAAGACTGCTA 67939 36 100.0 30 .................................... TTTAAATTCTCCTTTATCTCTTATCGTTTT 68005 36 100.0 30 .................................... TTGCTGTTAAGCTAACTGGCGACATGAGCA 68071 36 100.0 30 .................................... TTCCCATATTTCCGTTCAAACAACGTAACT 68137 36 97.2 30 ...........C........................ CGAGCCAAACAAAATTTCGATGTTCAGCAA 68203 36 86.1 0 ...........C............T..AG.....G. | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 98.5 30 GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Left flank : CAGTCGATTTAAACCGCTTGTTTATGAAGAAGATACAGACCCAGATTATCAAGTTAATGGCTGATGAACAACAAGTGGCCGTCTTGGATCAAAGCCGGGCCATGATTGCCAAAGTAATGGAAGCAAGTTTCCTATTGGATCTGCCATTAGATGTAGAGGAAGCACCAGGATTAGATCAAGCTTTGAAGTTTGCTGGAATTCACTTTCCCACGGATTTAACGCATAATCCTAGTGCAGTTTTAGAGGCGCTTGTTCAAACTCATGTTGAGCTAGGACTCAAGCAATGCCCTGTAATGACCAATGTCAGCCACTATTTGAACCCGGAACAATGGGCCGCTTTTGAACAGCAAGTGGCAGATTTAGGCACTACGGTTATTGTCATTGAATACTCAGAAACGAATCGGATGGAAAAGTTCAAGAATTGCTGTTATTATTATGTTGACGAGGATTTAGTAGACTGGCGTGATATGAATTAATTAGTAGATTATGTGAGAATGCCG # Right flank : CACTTTTCTTAGTATGTATTTGTACGCGCCTAGTCAAAGAAAGTCCGTTGTTAGATCTATATTTTAATCCTAGGGATATTTGACCGGGGGTCGCTAAGGGCTTAGCTCATACGAGTAAAATCAGATTGTCACTAGGTGGACGATAAATTCTTGCTTCGAGAAAAAGGTTTGGCATCTTTCTCGATAATCGATGTCTTCTGCAATGACATCTATGCTTAGGCGCATACAGGGAGATGTTCACAATGACGGTAAAAGTACAAAAACAAGGTCATTCACTAATGATTCCGATACCGGCAAACTTCCATGTTAAAGATAACGCGGAATATCAACCGGTTATGGATGACGACACCGGAATCTTATCGTTTATCCCAGTGCATGAAAATATCTTTGAACAAAATCCTGACTATGACTTTCAAACTGCGCTCAAAGAAATGAGTTTACCCGATAATGGGGAACTGGTTGATAAAGAAAACGTTTGGGAATGAATCAGAAGTAGCATC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //