Array 1 401572-405132 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKFC01000001.1 Lacticaseibacillus paracasei strain FAM10859 FAM10859_scaffold_0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 401572 32 100.0 35 ................................ AGCCACGCGGTGAGCACTTATTGATTAAGTAGGAG 401639 32 100.0 33 ................................ ACTAACCTTACTTGATGGCAAAGCATCCCGATT 401704 32 100.0 34 ................................ TGCTAAACTGTTAGCCCGCAGATAAACCAACATA 401770 32 100.0 34 ................................ TCGGCATGGGTATTTGGCTGACTACTTTAATACT 401836 32 100.0 34 ................................ CAGTTAGCCCACATCCACATTGAAACACCCGCAG 401902 32 100.0 34 ................................ CTTTTCGTCAATCAAACTGACGTCTGATCCAACT 401968 32 100.0 34 ................................ AGTTGCCAATTTGTGTCTCGGTAAAATCCGCACA 402034 32 100.0 33 ................................ CTTAAATTTTTAACGCGATTTTGATGTGGCAAA 402099 32 100.0 34 ................................ CTAGCACGGCTAAAAAGCCTCACAGTTGCGTTCT 402165 32 100.0 33 ................................ TGATTGATTCCCGTGTTGGCGAACCGACGGCAC 402230 32 100.0 34 ................................ CCGTTTAGCTGGGAACAGTACCCCACCTACGTCC 402296 32 100.0 33 ................................ AGTTTGTCAATCGTGTCAATGTTGATACGAGCG 402361 32 100.0 39 ................................ GGCGCTGGTGTCTCTGGATCAGTTTCAGCCGGCGCTACG 402432 32 100.0 35 ................................ ACGATTTCGCCTGTTTCCTCAACGCGCCAGACACC 402499 32 100.0 37 ................................ GACTTGTCAACGAAACTCAAATCGTCTTCAAATGGCG 402568 32 100.0 39 ................................ TTTGCCTCATCTGTTGCTCGCATGATTGATGGGCGAGCC 402639 32 100.0 34 ................................ TTTGAGCTTGTGTACTGGATGCCAAGCAACGTGG 402705 32 100.0 33 ................................ TTGCCTGAAGTTCAGACACCAAAAGGGTCGATT 402770 32 100.0 35 ................................ TATAGTTTGATCGTTGCTAACAACACTAAGGAAGC 402837 32 100.0 34 ................................ TGATATTCAAGTGCTTTCAGGGACGATTAATCGT 402903 32 100.0 35 ................................ AATCTGATCCTTTGAATGCAAGAACGCCTGTTCAA 402970 32 100.0 35 ................................ ATTTTGAGCAGCAGCGGCAGCAGTCCGATTATACT 403037 32 100.0 36 ................................ ACCAGAGAAAGCCTTGTTGATTGGGTTGATGACATG 403105 32 100.0 34 ................................ TTGATCGCTGTCCTGAGTACATTGGAGACGCAAT 403171 32 100.0 34 ................................ ATCCAGTATGCTCGTAACCCTTCTCGTGAGATTG 403237 32 100.0 33 ................................ AATCTGCGCTCTCTGACCTTAAGACTCACAATC 403302 32 100.0 35 ................................ CGACTAGTTTGGACGCTGGCGGTGCTGGAACGCCT 403369 32 100.0 34 ................................ CTCAACGCGCCATACGCCTAGCACCCATGCACGG 403435 32 100.0 35 ................................ CAACAATTCAAGCAACCGTAAGCAAGTGGCTGCAG 403502 32 100.0 34 ................................ ACAATCTAGCTTGTCCGATTTGCAACATCAGTTG 403568 32 100.0 34 ................................ AACTCATCAAAGCGATGAACAAACTTGATGAATT 403634 32 100.0 35 ................................ ATTATCAAACAAGTCATGAAAAAAGCCGCTGGCCT 403701 32 100.0 35 ................................ TTTACCGCGTACAGTTTTTCTTCGCTCATTTTTCG 403768 32 100.0 35 ................................ GCTTGTAACGTCTCGTGTGTTCTCCCAAGCGGTTA 403835 32 100.0 37 ................................ TCCTTTGCCACGGTGTAGCCGTTGACGTAAGCCTCCA 403904 32 100.0 36 ................................ AGCAATAAAGTATGAAACTTGGCCGTCCTCAAACGT 403972 32 100.0 35 ................................ ATGAGTTAGAATTGCAAGTGAACCATAATACTGAC 404039 32 100.0 35 ................................ TTGTTGATTCTGATCAACTTCCGCCTGTGCACCGT 404106 32 100.0 36 ................................ ATTAACGACTGCTGGATTGTACTTGGCAACGCCAAT 404174 32 100.0 33 ................................ GTTTCATAATTCAAAAGGTTTTAACGGTTGGCG 404239 32 100.0 35 ................................ TTTTTAGCGTCTACCCATTCGGTGGGGTAGGCGCT 404306 32 100.0 34 ................................ TACAAGTCTAAGATATTGGAACACACCGCACGCG 404372 32 100.0 36 ................................ ACGCGAATGGGTCATGCTTACGACCCAACTAAATCA 404440 32 100.0 34 ................................ ATGAAAGCAAACATATTCTTGAGTTTATTAACGT 404506 32 100.0 34 ................................ AAGAATGCAATCAAGGTTCCAGAGGAAAAGCGAA 404572 32 100.0 35 ................................ ATGCGTTACCCAACGGTTAAAACGTTTGGCCGCTG 404639 32 100.0 33 ................................ ACTTTGTAGGGGTTTTAGATCAAAAGAAATGAT 404704 32 100.0 35 ................................ CTAGTAAAGTCTTGGTGCCCTATATAAATACCACC 404771 32 100.0 33 ................................ ATGGTGACAGTCTGACACGTGCTGCTAGACAAG 404836 32 100.0 34 ................................ TTGCCGGTATGATCAGTACCGCAGAAGAAGCAAT 404902 32 100.0 36 ................................ TTCCACCACGTGCCACTATAATCCCACGTCTCGGTT 404970 32 100.0 34 ................................ AAACAACGTACCAATACCGAGAGCAAGTACGAAA 405036 32 100.0 33 ................................ ACATTAGCATTGATTTTAAGGCGAGCAACCTGG 405101 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 54 32 100.0 35 GTCGCACCTCACGTAGGTGCGTGAATTGAAAT # Left flank : GAAAAATTTAAACCTATCGATTCAAAAACTGTTCCGGTTTTAGTCCAGTGGCCTGAATGTCCTGAAAGTGGTCAACTAGTTGCAGAGGTTGAGGCTAGAAAGGACGACTTCGATCAGATTTCTGCACTAATGAAAAAGGCACAACAATTTGTAGTTCAAGTTTATATGGACGGTAGTCAGAAAACTTTGACTATGGGCAATGTCGTTGCCGACTATATTCCTGAGTTTGGATTGTGGATTGCTCGTGAGGGCTCATATAACGATGAGTTTGGTTTGGATCCAGATGGTGGCTCTAAGTTGGGCTTTGATATGTTATAGGGTAATATATAGTCGGGTGCGAATGTGTAGTTATCATCAAAACGTGGGAGACTCGCACCTTTATTTGGTAATTTAGTGTCCATTTATAATGGATTATGTTCTGATTTGCCTACAGGTATTAGTAAATGCCTTTATTAATTCTGCATGTAGTAGCGTTAGCCGCATTTTTACTATATTTTGCG # Right flank : TTGGCCACTAGCGATAGTGGATTGAAGTCAATATTTGAGACAGGTTTTAAGAGACATTCAGAACCGCGTTTACCTTCCACAGCTCAAATAAATCATTAATCGTGATTAATAACTTATTTGAACCCTGGAAAGCATTAAATCAGGCGGCCATTTGGCTCGTAAGTGTTGCAATTTCAACTTGTAAGGGGGTCTGGTAGCCCAGTGAACTATGAATTCTCTTCCTATTGTAGAAAGCATGCACATATTCAAAAAGGACGGCAGCGGCAGTTTCATAATCTTCAAAGACCGGCACTGGATAAACACATTCCTTTTTGAGGGAAGCGTGAAAGGATTCCATTGGCGCATTATCATACGGACAACCCTTACGGCTGTATGAGTGGCGGATATGTAGTTCAGTTAAACGTTGATTGTAATCATCGCTGGTATACTGTGATCCTAAATCCGTATGGATAATCAGGTCCCCAGTAATGGTTCGATTTTTAACCGCGCTTTCAAGGGTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACGTAGGTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTTACGTAGGTGCGTGGATTTAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 336331-334843 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKFC01000008.1 Lacticaseibacillus paracasei strain FAM10859 FAM10859_scaffold_0008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 336330 36 100.0 30 .................................... AAACGCATTGCTTGGAGCCGTGAAGGTATT 336264 36 100.0 30 .................................... TGGCCGAAACGAATCGAGGACGCGATCGAA 336198 36 100.0 30 .................................... TAATATTAACACGGTTATCACAACCTCCAC 336132 36 100.0 30 .................................... CCAAATTGGTTAGCACCGCTTAAAGACGAA 336066 36 100.0 30 .................................... TATCAGAGGCTTATCCATTAAACAACTGGC 336000 36 100.0 30 .................................... AAACTGCCTTCCGTTGCGATCAACTCGCGC 335934 36 100.0 30 .................................... AAGCGTTCGCTTGCGCTGGTGTTGGTCTCG 335868 36 100.0 30 .................................... TCGTAGCGGCTAACACGCTTATGGCTGACA 335802 36 100.0 30 .................................... AAAATATTTCTAGAATTAGCAACTTTATGG 335736 36 100.0 30 .................................... GATCGTTGAAGAAAGGCTGATCAATATGTT 335670 36 100.0 30 .................................... ACATGAATTTAGATGCGCGTATTAGGATTT 335604 36 100.0 30 .................................... CTGCTGTCGATTCGTCTAGTGATGCTGTTT 335538 36 100.0 30 .................................... CTTTTATTCGGTTCACGTTGATATTTCAAA 335472 36 100.0 30 .................................... GATGAACTTTATGACTTGATCCTTCACGCC 335406 36 100.0 30 .................................... CCTAGGTCAAACGAATCTAGTCTACAACAG 335340 36 100.0 30 .................................... TAGCTTTATCAAGACCAACGCCACCAAGAA 335274 36 100.0 30 .................................... CTCATCGGTCCTAGCTTTTGACAATCTCTT 335208 36 100.0 30 .................................... TTATCAAGAAAGTCCAGCCACGGCCTCGGG 335142 36 100.0 30 .................................... CGCAGCAGGCATGAGCATCGTGCGTGAGAC 335076 36 100.0 30 .................................... TTTACAGAAACACCACCTAACTTTGCTGAT 335010 36 100.0 30 .................................... CAAAAACAGATTTGATCGCTTCGCCAAAAT 334944 36 100.0 30 .................................... TGACGATTTGGTGTTATCCAAAAGCCGACA 334878 36 83.3 0 .......................C.....A..TTCT | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.3 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATGTATTTACTTCAAGATCCATTTTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGTAAGCTTGAACAAATCATGAAATACTGCAACGTTCATTTTGATGAGGCTGTCACGACAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAATTGGAGGAAAAGAAACTTGTCATTCTTACAAATGTTAGTCATTATTTAAGTGCCAGAGACTTTTCGTCGGTGACTGAACAGATCGGTGATACTGAACTTCAAGTCGTTCTCATCGAATTCTCAAAGGTGAACAGAAAGAAGTACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGACAATCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACAG # Right flank : AAACAGCAGTGATATTAAATTTAAGCTAAACTTGTCAAAAAGTGCCTCATTTTGTGACAAAATAAGGTGTTTCACTATTTATTGTGTGAACCAAGCCTCAATATTTACAAAGCTGAACCTTTCAACGTTCAGCTTAAAAGCCGCCGTCTAAAGCAATATCGTAGTAACCACATACACTCATGCGGTGATATATCAATCAAAAACTAAGTGCTATCTAACTCCTCTTGTGATAGAATTCATTATATATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGTGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGGTCGAGCTCTAGTTCGAGCAAGAGCAGCAGTAGTACGACCAGTCAGACGAGTAACGCTAAGGTGAAGATCAATACCGGCGCTGATGCGAGTGCCAAGGTGCCGGCAGCCGGTACCTTAGTGATGCGTCAGCTTTATGCTGCACCGCACGGCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //