Array 1 6237-4625 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBIM010000046.1 Neisseria sp. HSUH001 scaffold52_cov2010_read149, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 6236 32 100.0 35 ................................ GGCACAGCTCCGTGAAGCGTCGTAACATCTGCATC 6169 32 100.0 35 ................................ AGCCCGTGAAAGAGCCAAAACTTCAGAATGAAGAT 6102 32 100.0 34 ................................ GTCAGGTGGCGGTGGTTCGTCAGGTGGCGGTGGT 6036 32 100.0 33 ................................ TATTTAAACCTGAATCAGATAAATTTTGCGCAG 5971 32 100.0 34 ................................ AAGATACCTTCAGTAGCCACCGATAGCCCTTCGT 5905 32 100.0 35 ................................ TCGCCATTCAAAAACCATTCTTTCCCCACCTTTTC 5838 32 100.0 34 ................................ ATTTTCCCCGAATTGGACAAAGCCAAACTGTTTG 5772 32 100.0 34 ................................ TTCCCAGTCTGAACCCAAACATTCGCCTTTAGGT 5706 32 100.0 35 ................................ CGTGGGAAATGTCGGTTTACGCACAGGCGGAATCC 5639 32 100.0 34 ................................ GAATGTACCCTTTAACACGCTCTAACGCTGCCTG 5573 32 100.0 35 ................................ GGCCAATCCGGTACCAATGTGCGGACGCTCTTTCG 5506 32 100.0 36 ................................ CGTAATGCGGACGGGGGTTTTATCCAAGCCAAGCCC 5438 32 100.0 36 ................................ AAAATCCACCGTATCAGAGGTAAACCTCACGCGGAA 5370 32 100.0 32 ................................ TTTTTGGAGTACACAATGGCAAAGTTATACGC 5306 32 93.8 32 A...........G................... TATTGCTCGCTCAACCTCTGTTATCACATCTT 5242 32 100.0 34 ................................ TGACTGATGGCAGGCGGCATGTGCTGCGCGAAGT 5176 32 96.9 33 ............G................... AAGTGTTTGATGCGCGGCAAATCTAAGTTGTCG 5111 32 93.8 33 G...........G................... TGTAGATGGTATCGGGGGACAGGCGGTATCGGG 5046 32 93.8 33 T...........G................... CAGCATCCACGCGCCGTATCGTGCCGCCTGACC 4981 32 96.9 32 G............................... TTTGAAGAGATGGCCGAAACAGTTAAGGCAAG 4917 32 90.6 34 T...........G...........A....... CAGCCTTTACAGCCCGACTCAAAGCGAGAGGGAA 4851 32 96.9 32 ............G................... GGATTGATTAAAATGCTACACGGAAAACCGCC 4787 32 90.6 33 ........T......T..T............. AGACGACCTCTACCGTACTGGCGATTGATTTTG 4722 32 87.5 34 .T...T...........A......A....... CCGTAGCCGAGGGAGCAGATGTAGAGGCGCAGGC 4656 32 65.6 0 T.....AT......CTAA.CA.A...C..... | ========== ====== ====== ====== ================================ ==================================== ================== 25 32 96.3 34 CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : CGCCTTCAGGCGGCTGTGTGTTGAAACATCGAATTTGGGCAGTATCAACGGTGGTAGCTTGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCTGAAATACCGTGCTGATTTCATGAAGTCAGCTTGTCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGGAAAAACTGGGCGCAATTACCACTGCTGCCAAAGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACATGATGGTACTACCGCCGCCAGCCGAGACGGAAGACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACACATAAAGGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGTGTGTTGAAACCCAAAACGGAACCCGCAAGTTCGCGCAGATGTTC # Right flank : CAGACGGTGCTTTCCTGATTTAAACCGCCTGTAACCATTTACTTTTTGATGGTTATCTCTGAAAAATTATCTGTAAAATAGGAAATTTTTAATCCATCAAATCTCTGTCTTTCAGACGATTGAAATCGGATTTGTTCTGTTCTGATCAAATCAGATTTTCCAGCTTCGGGCTGTCGGATAAATTTGATGCAATGCAGGGTTTGATTGGCAAGGGGCTGGATAAAAATGGCAGCTTTGTTATAATAAAACTACTGGCAGTTACATACTTTTCTTGGCATTGCGCCGTTTTATTCATATTAACGAAAGAGGAAAACAAAATGTTTCCAGAATATCGCGATTTAATTTCCAAATTAAAACAAGAAGACGCCCACTTCGCCCGTCTGTTTGACGAGCATAATGAGTTGGACGATAAGATTACAGGTTTGGTTAATAATCCTGTTACCAGCGGTGCTGATGAGATTGAAGAGCTGAAAAAAGCCAAATTGAAACTGAAAGACGAG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.91 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 2 19105-6442 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBIM010000046.1 Neisseria sp. HSUH001 scaffold52_cov2010_read149, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 19104 33 97.0 33 T................................ TGAATAAGTAAGGGTAATCGACCATGAGAAACG 19038 33 100.0 35 ................................. AAAAACATAATCCGACACCTGCAAACGCAGCTCAA 18970 33 97.0 34 A................................ TGCATCTCTCCCCTGAAACGGGCGACATCGGACA 18903 33 97.0 33 T................................ GCCGAATGCACCTGTCCACTCATCAGGCTCGCC 18837 33 100.0 33 ................................. ATAAATCCATGCGGATGTCTTGCCTTTTGGTAA 18771 33 97.0 33 A................................ CATGATTTTGTCAAACGCCTGAAAGCCAAAAAC 18705 33 97.0 33 A................................ TGTGGCGATTTGCCGCCCATTGTCAGTATTTGG 18639 33 97.0 34 T................................ AGAGCCGTGCCTTGGTCGCTATAACAGGTACAAC 18572 33 100.0 33 ................................. CCACCGGACGCATCATGTCAGGTTTGTACCAAG 18506 33 97.0 35 T................................ GCGTTGGAATCAACTGTTTTGACACTCGATTAAAG 18438 33 97.0 34 G................................ CTTACGGATACCCCTTGACGCACGGACAAAGAAA 18371 33 100.0 33 ................................. CAACAGGCGATAACCGACAGCGTTACAGGCGCA 18305 33 100.0 33 ................................. CATTTGACTTGTTGACGGGCAACATATCATCTT 18239 33 100.0 35 ................................. TGATTGAACTGACTGGTAAGGGTTGTACGGCTGCT 18171 33 97.0 33 A................................ CATCAAGACACATTGGTAAAAATCGCCGGATGT 18105 33 97.0 35 A................................ CGCGATACGGTAGAAATGCCATGCTGCGTTTAATA 18037 33 100.0 33 ................................. TAAAAGTTTAGTTTAGATTTTTGGTGTTGGGGA 17971 33 97.0 34 A................................ GCTGTCGGCGTAGATGCAGGCGACGACACGCATT 17904 33 97.0 33 G................................ TTGATACCGTTTGTGCCGAGGAATATACCGTGA 17838 33 97.0 33 G................................ ACATTGAAATACTTCTCTTTGTATTCGGTCATT 17772 33 97.0 32 G................................ CTCAAGAAACTATCGATTTGAACTTCACACCT 17707 33 97.0 32 G................................ TTTCCAACCATAAGCGACACCGCGCGTTTTAA 17642 33 97.0 32 T................................ AGCTTTTTCAATCGCGGCATCTTTCAGGCGAC 17577 33 100.0 34 ................................. TTGCGCTGTTAGATACATCTTTTGCCCTTTCTAA 17510 33 97.0 32 T................................ GCTGGGTGCCGGATATTTGATGGTTGAGATGA 17445 33 100.0 36 ................................. ATTGACTGGGCGCTGACGTCTGTTGCGGCGGAGGGA 17376 33 97.0 33 A................................ TATCAATCAAATGTGTCCAACCTTCTTTTGGTT 17310 33 97.0 33 G................................ GCGAACATTATCCGAACCGTAGTATTTTGATTT 17244 33 97.0 33 G................................ TTAACTTCGCAATCCCAAAGGAAAGCAGGTTTA 17178 33 97.0 34 A................................ GCGTTGGTAGTACGTACCTAAGTCCTTGTCTGCT 17111 33 97.0 33 G................................ TAGTTATCGGCTGCATCTAGGTTATGCCTTAAG 17045 33 97.0 34 T................................ CCTCAAGACAGGGAAAGGCAACACATCAAGGATA 16978 33 97.0 33 T................................ AAGATGAACAAGGACATGCCGATCCCAAAACAA 16912 33 100.0 34 ................................. ATGTCGGCTTTCGCCGTAACAGCCCTATGCGTAA 16845 33 100.0 35 ................................. AAGCCAGGGCACACCGTTGAAAGAAATTACTAAGG 16777 33 100.0 34 ................................. TTTACTCCCAGCTAAATCAACGTTTTAAATTATA 16710 33 97.0 33 A................................ TTTACTCCCAGCTAAATCAACGTTTTAAATTAT 16644 33 97.0 32 A................................ GTTTCGGTATGCTTCTACGATATTAAACTTGG 16579 33 100.0 36 ................................. AAACGTGAGATGTTATTGCCCAGTTTTTGCAATTGA 16510 33 100.0 33 ................................. GGTAACTACGAATACGACCAACTGACAGACAGA 16444 33 100.0 33 ................................. TAGTTGTACACCTTTAGGCAGGTCAGCTACAAG 16378 33 97.0 34 G................................ AAATTGTACTTGCACTTGCGCCGTGTTGTATCTG 16311 33 100.0 34 ................................. TGAATGCCATCTCAAACCGCTGGCTTGTACCCGT 16244 33 97.0 33 A................................ CATGACTGCGCATTGTACTCGCTGTTTTGTTAA 16178 33 97.0 34 T................................ TTGACTTCACAATCCCAAAGGAAAGCAGGTTTAA 16111 33 97.0 32 T................................ TACCCAAGCTAAGTACAAGCTAAGTCCTGGTT 16046 33 97.0 33 A................................ CCCCGTATACCTGCTTGCTGCCTTGGTATTTTG 15980 33 100.0 34 ................................. ACGCATGGCATTCCCGAACTGACGATACCAACTG 15913 33 97.0 34 A................................ CCTCGTCGGTTTCTACCGTACCCTCAACGCGGCA 15846 33 97.0 33 A................................ AAGCCAAGCCCTGCGTCAGTCAGGGTTACAATG 15780 33 97.0 32 T................................ TTGGAATCGTTGAATATCGTCAGCCGACCATG 15715 33 97.0 33 T................................ GGGTGTACCACGATGTTAAGTTCGTCGCCTGTG 15649 33 97.0 34 A................................ TTCAAGGCGGCGTATCGTGCGGAACTGCGACCGG 15582 33 100.0 33 ................................. CAAAGTACGAATGGGATTACCTGTTTGGGAAAT 15516 33 97.0 33 G................................ TAATTCAACTGGCTTATAAACTGTTACTTTCAT 15450 33 97.0 33 T................................ TCACGCGCTTCGGCAAGCGAGACATCAGGATAT 15384 33 97.0 33 G................................ GTTCAACCTGCGCCGCGGCTGCTTAAGGAGTAG 15318 33 100.0 32 ................................. GGCTTGGCGCTCTTGGATCCAGAATGCGTCAA 15253 33 97.0 31 A................................ AAGGTCGGCAACTGCAAGAATCCGGTGGCGT 15189 33 97.0 33 T................................ TCCCTTACCATCAGACCCCTTAGACCCCCCCTG 15123 33 97.0 34 A................................ GCTATAAAAATCTTTTGCCACGTCGCAACGGGTA 15056 33 97.0 35 A................................ TTAACCACCTTTCCGATATTCCCAGTCGCTCCGCT 14988 33 97.0 34 A................................ CCTGAAAAAGACGACTAATCCCCACAGGCAGGCA 14921 33 97.0 34 G................................ TTGTTGTCGCTGTACACGTCTTTGAGTGTGGTAC 14854 33 97.0 34 A................................ CCGAGTTTTGTCCTGTGTTTGCTGCATTTTGTTT 14787 33 100.0 33 ................................. AGTTTTAAAACAAAACATAAATAATTATCAGGA 14721 33 97.0 33 A................................ ATCAATAATCACCACAGATCCATGATTTGCAGG 14655 33 97.0 36 A................................ CTTACTGTATCCCACTGCTATCACACTGCTATCACA 14586 33 100.0 34 ................................. ATTTCTATTTCTCAGACATCTGCCGTCTGAGTTT 14519 33 97.0 34 T................................ AAAATACGTTGGAATCCCGTAAAAACAGCCCTGA 14452 33 97.0 34 A................................ AAAGGCAAACGGGCAGCCCAAAAACTATTTAACT 14385 33 97.0 34 A................................ AAAAGATGCAACCATTTGATATGCGGCATACTTG 14318 33 100.0 33 ................................. ATGTATACAAATATGCACAAGACAAGTATGCTT 14252 33 97.0 34 G................................ CCTGGGCGGTCCGCTTGTCGATCCATCGGGGCTG 14185 33 97.0 33 T................................ AAGCCCTCAAGGGGGCTTTTTCAGACGACCTTA 14119 33 100.0 33 ................................. ATTTACGATCCTGATACGGTGTTTCAACAGCAA 14053 33 97.0 32 G................................ ACGCATTTGCGTAAGGCTCTCAAGAAGTATCA 13988 33 97.0 35 G................................ ACGGTCAGCGTTACCATGAACGCGCGGAGTTTTGG 13920 33 97.0 33 A................................ AACAGCTGCCTGTTGATTACGTTTCAATTTGCA 13854 33 97.0 34 G................................ GCGCCAAGCCTGCAGGGCGGCACGGTACTCATCG 13787 33 97.0 37 A................................ CAATCGCCTGATTAAGTCTGATATGCGCGGATTACTC 13717 33 97.0 32 G................................ ATGACTACCGCGAAAAAATCCTAACTATGCGG 13652 33 97.0 33 A................................ GCCAATCTCGGCAAATCCATCGGCAATGCTTTT 13586 33 100.0 33 ................................. CAAACGTACCGTCTGCCGCTGAAATGGGCAATA 13520 33 97.0 34 T................................ ACACGCTCAGGCAATGCACCATCTTTACGTCTTA 13453 33 97.0 32 A................................ CCTGATGTTTGCCCTGCTTTCAGGGTCTTTTG 13388 33 100.0 33 ................................. CAGCCTTTACAGCCCGCCTCAAAGCGAGGGGGA 13322 33 97.0 35 A................................ CGTACATACTCAGTTTGAACACTATACAAGGCTGC 13254 33 97.0 33 G................................ AGAGAAGCCGAACAGACACGAACCAAGACCGAC 13188 33 100.0 34 ................................. CATCTGCCCCCCATCCTCCCCATTGTTTGAAAAA 13121 33 97.0 35 G................................ AGCAGAATATCCATCAACACAGGACGTAATACGTC 13053 33 97.0 33 T................................ CGTTATTGACGGCAGAAAGGCAAAAGCAGTGGC 12987 33 97.0 33 T................................ CGAACATCACAAAATTTTCGGTCTCGTGTACGC 12921 33 97.0 33 G................................ GGTCACGCGTATGCGCGGAATCGCGCGGACGGC 12855 33 97.0 35 G................................ TACGCCCCCGTCCATTACTCACAATTCTCTTTGTG 12787 33 97.0 33 G................................ GAATCTCGACCCCCCCTGTTAGATAGGGGGGGG 12721 33 97.0 33 G................................ GTCAGGTGGCGGTGGTTCGTCAGGTGGCGGTGG 12655 33 97.0 34 T................................ TAATAAACATAATCCTAACTTTCGTAACGGTTGC 12588 33 97.0 33 G................................ AGGTATGCGACGCTTTGGCTTGGTGTGTACTTC 12522 33 97.0 35 G................................ CTGGTGTAGTACGGTATTATCTCTTTTTACCCACG 12454 33 97.0 33 G................................ ATCGCCCGCCTTGAAGCCAAGAATAAACCCAAA 12388 33 97.0 33 A................................ TGGGGTATCGCGTCGGATTGCAATGCTTTTCAT 12322 33 100.0 33 ................................. CCTAACATTTTGGCTTGTGACGAATTGCCCGAA 12256 33 97.0 32 A................................ AGTGTCTTTTTTGAATCTCAATTCTTCTTCTG 12191 33 97.0 32 A................................ TTTTGAATTGATTTGAAATGCAGGGCTTCCAC 12126 33 100.0 34 ................................. CGCTCCGTCGCGGTGTATCAGATTCAGCTTTCAT 12059 33 100.0 32 ................................. CGAAACCGTCAAATCGTCAGCAAGGAAGCGGT 11994 33 97.0 33 G................................ ATCTGCTTTCGCCACTGCCTCTAAATTGTCCGC 11928 33 100.0 30 ................................. CCTTTTTCGTACAACCGAATAGATGCCGAT 11865 33 97.0 34 G................................ CCACCTTTGTACAGTTACCAAGGATACTCCTGTT 11798 33 100.0 33 ................................. ATCGCTTCGGGTATGCCAGCCAATCCGAGCAAG 11732 33 100.0 33 ................................. CTGACGTGCCTGATGGTGGTGGTGAGCCTGATT 11666 33 97.0 35 G................................ ATCATAAAAACGACCTTTCCCGACGGGAGCAGGGG 11598 33 97.0 34 A................................ TATTGTGATGAAGTCGCCGTACCAAATCAGATTC 11531 33 100.0 32 ................................. ATCCCATTTATACCCTTCTGCTTCTAAATCTC 11466 33 100.0 33 ................................. CAAATATCTATTTAAAAGATGATGCAATTAAAA 11400 33 97.0 33 A................................ ATGTCGGCTTCCGCCGTAACAGCCCTATGCGTA 11334 33 97.0 35 A................................ TGATAAGAAACTTGTAAAATCTGTTTTTTAACCTT 11266 33 100.0 34 ................................. AGTGTCATACCGAATATTTTTGCATATTCCTTTG 11199 33 100.0 34 ................................. ACGTTTTTCTTGAAATCATCGGACGGAGCTTCAA 11132 33 100.0 33 ................................. AGTAGGAATCGTCAATTCTGGAATGCCATGCGT 11066 33 97.0 35 A................................ AGGAAGACGGCACAGCGTTGTGGCCTGAAAAGCAC 10998 33 97.0 34 G................................ TACAACGCCGCACGATAAGTCAAGTTATTGGGTA 10931 33 97.0 33 G................................ AAAGTGCGCTCCAATTTGGGTCGTCTTATCTTT 10865 33 97.0 34 T................................ TGCACATCTTCGGCAAACATGTCTGTCGTGTCTA 10798 33 97.0 34 T................................ TTGCCTGCTGTTGAAACGGTAATTGCGCAAAAAA 10731 33 97.0 32 T................................ CCAAATGGGCAGCACGACGACCAAATCGACTG 10666 33 97.0 34 T................................ AGCGGCTCGCTCTAACGGCTTTTGTCCGTGTATG 10599 33 97.0 32 T................................ TGTTACTCAGGCGGCGAGCGTAGGGGCAACGC 10534 33 100.0 32 ................................. TCATGCAGCCCGCCTGATAGATGTTGCGCGGG 10469 33 100.0 33 ................................. CTGTTCCACTGTCTGCAAAACATCTTGGTCATC 10403 33 97.0 34 T................................ CACATGGCAATGTCGCCCGACTTTGGGTCGTCCG 10336 33 97.0 33 T................................ AAGGCCGTGCAACTGATGGTACGCGGTAACCTG 10270 33 100.0 34 ................................. TAAGTTCGCCAACACGTTTGCGGCTCATCCGTAG 10203 33 97.0 33 A................................ CAATTTCGGCACCATCCTGATTTCGGGCGGCGG 10137 33 100.0 33 ................................. ACTTTTTGACTCCTATTTAGATTTAAATGCGGC 10071 33 97.0 35 A................................ ATCGTTGATGCACTCGTCAATCAGGGCTTTGGCGG 10003 33 100.0 34 ................................. ATCAGCTGATACTCCCCATCCTCGCCGCGCTGAT 9936 33 97.0 35 A................................ CATAGTATCACCTCTAAGAGTTACAAAAAAAACTT 9868 33 97.0 33 A................................ GATACGGCTATTAACCGCTTTCTCAAGCGCAAT 9802 33 100.0 33 ................................. CTTACTGTAGCCTACTCTTAACTAGTAGGCTAG 9736 33 97.0 34 G................................ TTATCAATTAGTTCTCACTTAAGTTACTATCTCT 9669 33 97.0 33 G................................ CTAGGTATTACCGTGTACTTACCGTGTACTTAC 9603 33 100.0 33 ................................. ACGTCCTTATCTCCCATACTAATTTTTTTATTG 9537 33 100.0 33 ................................. AAAAGCTCCAACCCAAGCCTTTGAAGAATCTGA 9471 33 97.0 33 G................................ CAATAAAAAAATTAGTATGGGAGATAAGGACGT 9405 33 97.0 34 T................................ ATTTGTCTGAAAGCATTGCAATCCAACGCGCGCG 9338 33 100.0 34 ................................. AAAAAAATCTTTCGCAATATCGCAACGCGTTATT 9271 33 97.0 34 T................................ AGCAGTAATACTGGAAGACACATCGCCAATACCT 9204 33 97.0 33 T................................ AATTCCTAAATAAAAAAGGCCGTCTGAAAACAA 9138 33 97.0 33 A................................ TTTTGCGCCCCCTGTCGTCCATTCGAGCTTTCG 9072 33 97.0 33 G................................ ATTTTGTCCATAAATGCTTCCATACGAACATAG 9006 33 97.0 32 G................................ TCTCAATAATCTTTGGTATTCGTTTTCATCTT 8941 33 100.0 34 ................................. ATCGAATTAACGGTTCGGAAAACCATCATTGCAG 8874 33 97.0 34 A................................ TTAGGCTTTTGGACTAAAAATACACATCAATCGA 8807 33 100.0 33 ................................. TGATTCTAAATCCCCTTTGACAGCTTGATAAGC 8741 33 97.0 34 T................................ TTAAAATTCATAATTGGGAAAATTTTAGATTCTA 8674 33 97.0 35 A................................ CAAAGAAACCATAGACGTAACATTGATTACGGCAA 8606 33 97.0 33 G................................ AGAACGTGTTAAAGGCTACATCCCAAAGTGCAT 8540 33 100.0 33 ................................. AGCTCTTTAGCTTTTTCGATAATCTTACCGGCA 8474 33 97.0 35 A................................ CAGTATCCGTCCAAATCTGCTCTGACAGCATATAA 8406 33 97.0 33 G................................ TGTGGTACGGAACTGAGAGAGATGGCAAATCAA 8340 33 97.0 33 T................................ CAACATCAAACAAATCCGCTCACTGTACTATGC 8274 33 97.0 32 G................................ TAGTTTGTTGCTGTTCAGCATTTCGCCGTAGA 8209 33 97.0 32 G................................ CCTGATTAACCGCGCTGCTTTTGCCGCTTGGC 8144 33 97.0 34 T................................ AGTCCGAACAGATGGAAAAATGGAAGCGGGCATA 8077 33 97.0 35 G................................ TATCAGACCCAATATGGCCGCCTGACGACACAAAA 8009 33 97.0 34 A................................ CAGTTAAAGGTAAGCAGGTAGTTGAAAAAGGAAA 7942 33 97.0 34 G................................ GATGTTTAAAAGGGCGCATGATTGCGCCCCGCTG 7875 33 97.0 33 T................................ TCCTCAAATCGCTGGCAGGGAGGAGGGAAGCAA 7809 33 97.0 30 G................................ CTGAGATTGGCTATACACCCGCCAATCTCA 7746 33 97.0 36 A................................ ATCTTCTAAAGTTGCTGCAAAAATTGAAGCAACTGT 7677 33 100.0 32 ................................. TTCACTGCTTCGATGCGTTTGGCTTTCTCTTG 7612 33 97.0 34 G................................ GCGGCATTGATGGCGCGGCCGACTTGGTTTTTCG 7545 33 100.0 34 ................................. TGTCCGATATTTTTGGTTTCGGTATTACTGAAAA 7478 33 97.0 33 A................................ CAAAGATGTGATATGTCCGTTTGCGCGGATATA 7412 33 100.0 34 ................................. TTGCAGTGTTAAGAAAGGAAGTGATGAAAGAAGT 7345 33 97.0 34 G................................ TTAATGGGCAGGTCGTCAAAGCCGAATTGCCCGA 7278 33 97.0 33 A................................ CATCGAATTGGAATTGATTGATGATTTCGGAAT 7212 33 97.0 33 G................................ TTCTGTTTCCGGGTCAGTTTTGGGGCGGTGCAT 7146 33 97.0 33 T................................ CGATTGGTTACTGGCTTTATGCGCGGTTAAGAA 7080 33 97.0 34 A................................ CATGAGCCTGCCAAAGGCTATGAACACCCGCGCT 7013 33 100.0 35 ................................. TTGCTAAAGACTCAGTTTGCAACTCTTTAGCCAAA 6945 33 97.0 36 G................................ CTGTATCACTTTTGCGCTGCGATTACTCATAAACAC 6876 33 97.0 34 A................................ AGTTGGGTATGACGTCTGAAGAGATTGTTGAGCG 6809 33 97.0 34 T................................ ATGTTCATCGGCATTCGGGCGTTGATATTATTTT 6742 33 93.9 33 G............A................... ATCGAATTTGGGCAGTATCAACGGTGGTAGCTT 6676 33 93.9 35 G............A................... CTGAAATACCGTGCTGATTTCATGAAGTCAGCTTG 6608 33 93.9 34 T............A................... GGAAAAACTGGGCGCAATTACCACTGCTGCCAAA 6541 33 93.9 34 G............A................... ATGATGGTACTACCGCCGCCAGCCGAGACGGAAG 6474 33 93.9 0 A............A................... | ========== ====== ====== ====== ================================= ===================================== ================== 191 33 97.8 33 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATGGGAATACAAAATGCTAATGCTGATTACTTACGATATTTCGCTGGAAGACGCAGAAGGACAGGCAAGACTGCGGCGCGTGGCGAAATTATGTTTGGACTACGGCGTACGCGTGCAGTATTCGGTGTTCGAATGCGACATCGCGCCCGACCAGTGGGTTGTTCTAAAAGACAAACTTTTGAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCGAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCGAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAACTGGAATTGTTCTTTAACAATCAGGATATTGCGAATGCGGGTGTAACGGAAAAGGCTGTGTTATACTTGCGTTCGCGCTTTTCTTGGGAGCCTAGCGAAATCGGGGCTGCGAAACCTGATGGAGCAAGGCTTTTGAGAGAGGC # Right flank : ACATAAAGGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGTGTGTTGAAACCCAAAACGGAACCCGCAAGTTCGCGCAGATGTTCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGGCACAGCTCCGTGAAGCGTCGTAACATCTGCATCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAGCCCGTGAAAGAGCCAAAACTTCAGAATGAAGATCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGTCAGGTGGCGGTGGTTCGTCAGGTGGCGGTGGTCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTATTTAAACCTGAATCAGATAAATTTTGCGCAGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAA # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.33, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //