Array 1 85-448 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOGV01000017.1 Salisediminibacterium haloalkalitolerans strain 10nlg, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 85 33 72.7 33 TG.CATAAA.......................C GTGCATGCTGTTGGCAGGCTCAATCACATCAAC 151 33 93.9 33 .........T......................A TTATCAATCCAAGAGAAAACTTTGAAACAAAAC 217 33 100.0 32 ................................. TGATCAAATCATCCGGCCGGTAGTTTGACGTA 282 33 100.0 33 ................................. ACATCAGTAAATGAATCACTGTCGTGATCTGGT 348 33 97.0 35 ................................A TACAAAGTAAAATGGTACGCCTGAGTGGACTCGAA 416 33 90.9 0 ...............T.........A.....C. | ========== ====== ====== ====== ================================= =================================== ================== 6 33 92.4 33 GTCGCACCCCACGTGGGTGCGTGGATTGAAATT # Left flank : GGTGTTCACAAGTGGCTTTTTCTATGTCCTTCCCCTTCTCCAGGATCATACATAAATGCAATGCCGAACCTTACATTTTTAGTTT # Right flank : TTTCAAGCAGAAATTGTGTTCTACTTTTATATTTTAGGCCGAAAAGAAATCAATAATTTTATTAGTAAACAAGCACTTCAAAGGAATACTGACCTCAGAGAAGGTTACTATTTTATAATAAAGCCTGCCTGAGTGCGTTTTCACAATCTTTTTTTCCAAGAAATGATATGATTTTTGCAAGAGCAGTTTAAATTGGGGTGAGTGTGATGAAGCGTATTTGGGTGAATGGGTTGCTCGCTGTGTCGGTCGCTGGGTTGGTTATGTTCGCCGGCAGTTTCGTCTATGCATTGGCGGACGAGGCGTTAGCGGGCAACAATCCGTCTGCTCAGGAGCGTGTTGGAGGTGCGTTGCCGGAGCGGCAGTTTGCGATGCAGCCAATGGCGGCTGGCGATAACGACAGCGATGCTGATGCTGAGACAGAGGACGGCAAAGTGCAGCTTCTCGGCCTCGGCGATTCGCTGACGAGCGGGATGGGCTCATCAGACGGCGAAGGCTATCTT # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACGTGGGTGCGTGGATTGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,1.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 6039-75 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOGV01000009.1 Salisediminibacterium haloalkalitolerans strain 10nlg, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 6038 33 97.0 32 ................................C CTGTACCGGGCTCACGCGAATAGAGATATATC 5973 33 97.0 34 ................................A ATCGCGGAAAAGTCACTAACATCAAACTGACAGC 5906 33 97.0 31 ................................A TGTTTATCGCCCCTTTCAAATTTGATAAAAA 5842 33 97.0 32 ................................A CACACACGTGAATTATAAGGCTCTCACGTACA 5777 33 97.0 33 ................................C CTTGATTGCACGTTTGTTTAATTGCGCTCTCAC 5711 33 97.0 34 ................................A ACCTCAATGTCTGTATCCATGATGACATAGTGGC 5644 33 100.0 33 ................................. GTGGTATCCACACGCCTAGTTATCTCCGTCAAA 5578 33 97.0 32 ................................G TCTAACGTCATGCTAAAAACCTTGGAAAGCAG 5513 33 97.0 32 ................................A TCATTTTCGTAAAAAGAGGACACATTAAAATC 5448 33 97.0 33 ................................G GAGCCGGCATCATGTGTCCATGATCCAACGATA 5382 33 100.0 34 ................................. TGGCGTATTGATTATCACCCAAGAATCGATGCTA 5315 33 97.0 33 ................................A GTGCTTAGATGATCGATCAAAAGAAAATCAAAC 5249 33 97.0 33 ................................A GCATTGTGTTAAGGTCAGCAACGACCCCGGCGT 5183 33 97.0 32 ................................C ATCGCTTTTCGACTTCAATGAAATATTGACGG 5118 33 97.0 32 ................................A TCATCGACCCAACGAGCTACACCAAAGCCATT 5053 33 100.0 32 ................................. TGTACATCTGTGACCCAGCGCTTTAACTCATC 4988 33 97.0 33 ................................A TCGATTGATACGCCTGTTTCATCGCAATACTCC 4922 33 97.0 33 ................................A TCCATGCGCGTATCTTGTGATTGATTAGCTACT 4856 33 100.0 35 ................................. TCGTCGCCGTCCCGGAATGTTGTTTTCAGGTTACT 4788 33 97.0 33 ................................A ATACCTTCCCAAAGTGATTCCCAAATGGATGTT 4722 33 97.0 33 ................................C ATCGACGGAAAGTCCGTTATCTCGTTGGTACTC 4656 33 97.0 34 ................................C TCAGCAGTGGAACGAAGAAAACGAAGAGTGGGAA 4589 33 97.0 32 ................................A TCGCTCCTTAATTTCTATAGCTTCGACTTCTT 4524 33 97.0 34 ................................G CTTGGATGATTCCCGGAAATGGGATCAACAACGT 4457 33 100.0 32 ................................. CGTTGTTAGACAAAGATTCCTGCAGCCTTGAG 4392 33 97.0 33 ................................C GGATCCTGTAATACCGCCGAATGTGACGTTTTC 4326 33 100.0 32 ................................. GAACGACGAGAAAAACAAGGCTGAGTTAACCA 4261 33 97.0 32 ................................C GTTGTTAGACAAAGATTCCTGCAGCCTTGAGT 4196 33 100.0 32 ................................. TTTAATACTCTTATTTGCTTATCCGTCAATGA 4131 33 97.0 33 ................................G AATTGAAATTGACGGCACATTTGAAGGTGAAGA 4065 33 97.0 33 ................................G ATAAATAGCCAAAAGCAAGCCGGCCGATTGTGC 3999 33 100.0 32 ................................. GTGGTATCCACACGCCTAGTTATCTCGGTCAA 3934 33 100.0 33 ................................. TTCGTTTGACTGACTGACAACTCGCGCACCGGG 3868 33 100.0 34 ................................. CTTGCGATGTTCCACGCCATCTCCATTACTTTTT 3801 33 97.0 34 ................................A GTTTATCCGCTTCGCTTTGAAAAAGTAACACCAG 3734 33 100.0 32 ................................. CAGAGGAGGATCATCATCATCTTGTAACGGTC 3669 33 97.0 33 ................................A TCTCACGTTTCGGATCCTTGATCCCTTCATAAA 3603 33 100.0 32 ................................. TTCTAAGATCTTTCTAGCATTTTCAAACCGCT 3538 33 97.0 32 ................................C TCGGCCAGCTTATCTAATAAGGCGTCTGTGAG 3473 33 97.0 32 ................................C ATTTGGGAACGACAATAATTCTTTTTCAAATT 3408 33 100.0 33 ................................. CTGTTATATCTCCAAGATCGACCGTTTTGTAGC 3342 33 97.0 32 ................................A TAGTCTGTATTTTTCCGATACAGCTGTGTGTT 3277 33 97.0 34 ................................C TAGCCAGCCTGTTTTCATAATTCACCTCCAAAAC 3210 33 100.0 34 ................................. TTTGTATCGTCGCTGCCAACAATTAATGTGTAAC 3143 33 97.0 32 ................................A ATTAGTGCCGCGAAGTCCCTTTCTCTTCGCGA 3078 33 97.0 33 ................................C CCCAGAACAGACGGCGTGAAATAAAAAGATTTA 3012 33 97.0 34 ................................A TTACTCTACCAGCAGAACTTGAACTCCCATTATC 2945 33 97.0 35 ................................A ATTCTCATTTTGCAATATTGATCAAACGTCATGCT 2877 33 97.0 34 ................................C TTTGCCAGCGCCTACACCGTCAAAACCTCCAATA 2810 33 97.0 32 ................................A AAAAATGGCGAGGACTAGAGCCCCCGCCTTTC 2745 33 100.0 33 ................................. CGAAAGTCGGCGAATAGACCTAATACTTCTGAT 2679 33 97.0 32 ................................C GATCGTCTATGAGTTGGACAGCAAGAAAGAGT 2614 33 97.0 32 ................................C TATTTAAATGGCATAGGATTGGATTACTACGC 2549 33 97.0 32 ................................C CTTGCCAGTAAACCCGTCTATCTTGGTATAAA 2484 33 97.0 33 ................................A ATCCGTCGTTTACAATGCGGTTGTTAAATGATT 2418 33 97.0 33 ................................A ATAACATTATGATGGAACGAGGAATTCCAATTA 2352 33 100.0 33 ................................. TCTAATTCGCCGACAACGGACGGCATATCACGC 2286 33 97.0 32 ................................G TTTGATTTTCTTTTGATCGATCATCTAATCGG 2221 33 100.0 31 ................................. TTTACAAAAAACGACAATCAACGAAAACGAC 2157 33 100.0 33 ................................. CTATGTCTATATTTAAACCGTCGGAATCTTGCA 2091 33 100.0 38 ................................. TTACATGATGAAATTCGACCCCACCACGGAATAGATAT 2020 33 100.0 32 ................................. TTACAGTCCGGAGCATCGTCACCAGAACCTAT 1955 33 97.0 34 ................................A CTGCGACAAACTCCCCTTGCTCCACTTGTGTCGG 1888 33 100.0 34 ................................. TATCTAAAAGTTTTTTAGTCGGTGCAAACATATC 1821 33 97.0 32 ................................A CCGATCAAGACCGTCATATTGTCGAATTTACA 1756 33 97.0 33 ................................A ATAATCACGTTCAAGACATTATTCAAAATCGTT 1690 33 100.0 32 ................................. CATCTTGGCTCGGCTCACCTGTCATGATCTGC 1625 33 97.0 32 ................................A CCTGCTCGAATTTGCGCCGGGCAGTTTTTATT 1560 33 100.0 33 ................................. AACTGCTGTAGGCGTTTGTCGGTTGTGAGCCGG 1494 33 97.0 33 ................................A TGCACTCGTTTTTCAAGCACATCTTCCGGAATC 1428 33 97.0 32 ................................G CTGATTCCGTTAACCCTTCAATGTTTTCGATG 1363 33 100.0 34 ................................. TGCATATCTTGAGAAATGGCCAAACCGTCGCCTG 1296 33 97.0 33 ................................A CTCAAACGATTCGATGGAAGAAGCAAAAAACAA 1230 33 97.0 33 ................................C TATGTCACCAGATGTTGTATGACCGTCTTTTAC 1164 33 97.0 32 ................................C ATTCGATGCTGTATATCCATTAACTCGCCGAT 1099 33 100.0 33 ................................. AAATCGCGGATCCTTTTCATCTGTAACCGCCTC 1033 33 100.0 32 ................................. GCTTTCAAAGATTTTTAACATGACGCTCGATA 968 33 100.0 33 ................................. GAGCGTGGGGTGTCCAAAAGGTTTTTAGCGGAT 902 33 100.0 33 ................................. GAGCGTGGGGTGTCCAAAAGGTTTTTAGCGGAT 836 33 100.0 33 ................................. GAGCGTGGGGTGTCCAAAAGGTTTTTAGCGGAT 770 33 100.0 33 ................................. GAGCGTGGGGTGTCCAAAAGGTTTTTAGCGGAT 704 33 100.0 32 ................................. GTAACCGTATAGCTTTTGCAAGTATTACCTAC 639 33 97.0 33 ................................A ACAATTAGGCACAATCGCGCACGTGGTACGCAT 573 33 97.0 33 ................................A AAAACGCGAGGACGCAGATGAAATGGAAATTAT 507 33 100.0 33 ................................. GCGAAAGATATCCAAGAGAATAATCATACCTAT 441 33 97.0 33 ................................A ATATCTCCGTAACAACCGGTGTCGCTTCGCGGC 375 33 100.0 34 ................................. AGTATTAAAAAGAACGTCGAACTACTTCGAACTG 308 33 97.0 32 ................................G ATCAAGGTGATCTTTTGGAGTCTGGTGTAAGG 243 33 97.0 32 ................................A GGGTATGAATATAGGCTTAGGTTTAGATACGG 178 33 97.0 34 ................................A GATGCAGTTAGTGCTAAATATTGATGAAGAACGG 111 33 81.8 0 ...................TA....GA....AA | AC,TT [84,88] ========== ====== ====== ====== ================================= ====================================== ================== 91 33 97.9 33 GTCGCACCCTACGTGGGTGCGTGGATTGAAATT # Left flank : GAGTACCCTCCGTTTTTATGGAAGTAGGTGGCTAAATGCTTGTATTAATCACTTATGATGTTTCAACATCGAGTGAGAGTGGAGCTAAAAGGTTACGACAAGTAGCAAAAATTTGTGAACGATATGGCCAAAGAGTGCAAAATTCTGTTTTTGAATGTTACATCGATAATTCTCAATACGTAATGGTCAAGAATGATTTGAAGAAAGTTATAAAAGTGGAATCAGATAGTTTAAGATTCTATCAAATTGGAAATAAATACAAAAACAAGGTGGAGCATATAGGTATTACTTTAGGATTTGATATGGAAGATCCATTAATTTTTTAGAAGAGTGCGAAGGTAAGTCGAACATAGATACTGGGAACAGTTCGCACTCTCAACAACAATCATTGTGTGAAAAAATGTAATAAATAAAAGCTTGAACAATAAGAAATATATTGTTCAAAATGGCGAGATAAATACAATGGCCTATATAGAATCCAATTATTGTTAAAAATCGCC # Right flank : ATGTATAAAACGGCAGCGCTTTTTGTCATGCCACTCGTGAACCCCGTCTTCACTATCATTTCTCGATCTGATTCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACGTGGGTGCGTGGATTGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //