Array 1 189534-188902 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHIL010000005.1 Clostridium butyricum strain 4928STDY7387864, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 189533 32 100.0 37 ................................ TACTTTAGCGATAAAGTCTTTCATTTTAGTTCCACCG 189464 32 100.0 33 ................................ TACTGTGTCAGAAATACGATAGTTAAAGAAATG 189399 32 100.0 34 ................................ AACTCCATAATATAGCGCATATGGGTTGTATATA 189333 32 100.0 36 ................................ TTCAATGTCAGCGATTGCTTTTTTTACAATTTTTCT 189265 32 100.0 34 ................................ ATCCCTGTGTTGTACCAATCTCCCGTTAATGCAG 189199 32 100.0 34 ................................ CGCTTACCATGTCATAATTATCATTGTCATATAC 189133 32 100.0 34 ................................ CTAGTTTTGTTTGTGATTTAAACGTTATATATTC 189067 32 100.0 34 ................................ ATATAGATATGCGTAATTGTATCCATCATATTTG 189001 32 100.0 37 ................................ TACTTTTAGCAATCGTACAGATACCTGAATAATCTGA 188932 31 84.4 0 .....................AC-....T..G | ========== ====== ====== ====== ================================ ===================================== ================== 10 32 98.4 35 GTCTAGCCTCCCTGAGGCTAGTGGATTTAAAT # Left flank : ATTTACCTGAATATCCACCGTTTTTATGGAAGTGATGAGAAATGCTTGTTATAATAACTTATGATGTCAACACCCAAAACAGCGCAGGTAAAAAAAGATTAAGGAACGTTGCTAAAGTATGTGTGAATTATGGTCAAAGGGTTCAAAATTCAGTTTTTGAATGTGTTATGGATCAAGCGAAATGCAGAGAGGTTAAACACAAGCTTACTGGATTAATTGATAAAGAACATGATAGTTTAAGATTTTACTATTTAGGTAACAATTACAAAAATAAAGTAGAACATATAGGAGTTAAGCCTAGCTTCAATGTTGAAGAAGATGTATTGTTTATATGAATTATTTTGCGCGAACCGTAAGCTCACATGAAACCCTTGGGAGGTTCGCGCCTTAAAATTGCGTTTTATCGCATTTTGTAACAGCTTTTTCATTTTCATAACATTCAATAGTTATGAAAAGAAATGATTTTGTTACAAACGTCTTAAAATGCAATAATTTTCACT # Right flank : CTTAGACAAAAAAAGCAAAGCACTCCTTCTAATGCTATATTTTATAAAATCCTACTTATTCTTCATATATGGTATGACTTTAGTAAATCATTGAAACCTCCAAAAAACCTTTATTTATCGTACTTTCGCAAGTTTTAAAAAGTATATACCATTGAATTTATCGTTTTCACGGAAAATTTAGTCTTTTATATGTGCCTATCTGTGAGGTGTAGTGTACCTGTATGTAATTGTATCGGATTACGAGTAAACCAACGAGGAAACGATAGAAATGAGACACTGTACATAAAGTTCCATCAATTACTGTTTTGCAAGTGAATCAGCGTTACTGCAAATTTATTAGCCATTTAAATCTGGATATTTTATTCTATAACGCATACAGTGATGAAGTACATGAAGGTTACATAAAAATATGTACAGAAAAAGAATATATTGATGTGTGTCTTCCTTTTTAAGTGCTTAAAAACTTAATGAGTGCAAAGCAGCATAAAGCTCCAATTGTA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCCTCCCTGAGGCTAGTGGATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCTAGCCTCCCTGAGGCTAGTGGATTTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.80,-6.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 232133-231109 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHIL010000005.1 Clostridium butyricum strain 4928STDY7387864, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 232132 32 100.0 34 ................................ TGGTGTGAGGGTTTAATCGTCGCTTTGCAGATTG 232066 32 100.0 34 ................................ CTTTAAATCCTATTTTACTATCGAGATTAACCCT 232000 32 100.0 34 ................................ TTTGGCTGAGGGTCACGCTCCTATTACTTATACC 231934 32 100.0 33 ................................ TTGACTATATTACTGGGGTTATTGCTAACAGAG 231869 32 100.0 34 ................................ GGATAAAATACCACAACCGACTGTTTGTATGTAT 231803 32 100.0 34 ................................ ATATGTAATGCATCATTTTATCAAGTGAAGTAAC 231737 32 100.0 35 ................................ TTTAAGCATTATGATGTATATGATATCGAATACTT 231670 32 100.0 34 ................................ GCTTCCTCGAAATCATCGAGTACGGCACGTACAA 231604 32 100.0 36 ................................ TGCTCAGTCTGTGTTTAATAGAATTAATACGATTTT 231536 32 100.0 33 ................................ CTACATGGGTTGACTTAGGAGAAAACGTCGAAA 231471 32 100.0 34 ................................ AATAATAAATTCGTCAAATATAATAAGGTTAACT 231405 32 100.0 33 ................................ ATCATAATTGGGGTGTGGCTGATGAATGGGCGT 231340 32 100.0 35 ................................ TTTTAGTTTATCTCCAAACATCATTATCACCACTT 231273 32 100.0 33 ................................ TCCTATCACTCCATTAAATTCTAACTCGCTACT 231208 32 100.0 36 ................................ ATGCAGGTTTGGATTTGGGTGTGAAATATGGATCGA 231140 32 96.9 0 .......................A........ | ========== ====== ====== ====== ================================ ==================================== ================== 16 32 99.8 34 GTCTAGCCTCCCTGAGGCTAGTGGATCTAAAT # Left flank : AATGCTCACAAATACGGATTCATTTTACGTTATCCCGAGAATAAAACAAATATAACAGGGACAGCAAATGAACCGTAGCATTTCCGTTATGTAGGAACTGAAGCCGCTACAGAAATGTACCGTAAAAATCTGTGTCTGGAAGAATATACACTGCAGCATGGTTTCTCATATCCCGTTTCAATAAAGCGCTGATAGCAAATGGATGATATTCATTATGAACCGTCCAGTTATTTTCCTATGAGGTCAATAAGATTTTTATTTCATACTGGAATGTATCCTTTTTATGTATTCGGAGTTTTTTCTGTTATAATACTAGTAGATGGTTATCCCATTAAATAATCCAGCGCGTACCATAAGCTCACATGAATTTCCTGGGAGGTTCGCGCATCATTTTGTTCAAATTCGCACAAATGTAACAATTTCAACGCAATTTTCATTAACCAAAGTTTTATAATTGTGTAAATTTGTTTCATTTAGGGGATTTCATGGGATTTTTCACG # Right flank : TTATTATAAGATTTCCCATTATCCTATGAAAAAATACGATTTCCTTTTGCCTGACAGTAACGCAAGATCATTACAGGCTTAAGAACATCGTATTTTTTAATTCATTTTGTTTATCCGCTCTTCTTTTCGAATGTGCGCTTTAGCTGTTCCATAAAAACAGCAAGGACAGCAATATCCGCAGGATTTACACCCGAAATACGGGAGGCCTGTCCCATCGTCAGAGGCTGTACCTTATTCAGCTTCTGTCTTGCCTCCAGTGACAGATTCACCACCTGATCATAGTCAAACCGCTCAGGCAGGCATACCTTGTCCATCGCCCGCAGATGTTCCGCATCACGCTTGGCTTTTTTTATGTATCCCTCGTAGCGAATCTCGATTTCCACAAGCTTCGCAATCGCAGGATCAAATTCGCGTTCCAGATAGGGCTCTAAAAGTGCGATGGTAATTCCCGGTCGCTTCAGCAGCTCTGCAGCACTGATCCCCTCCTTCAGCACATCCAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCCTCCCTGAGGCTAGTGGATCTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTAGCCTCCCTGAGGCTAGTGGATCTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.80,-6.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 256661-254132 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHIL010000004.1 Clostridium butyricum strain 4928STDY7387864, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 256660 33 100.0 34 ................................. AAATTGAACATTTGCACAGTTTTCCACCGTAATT 256593 33 100.0 33 ................................. CGACGCTATCCCGATATATTAAGTGACAATCAC 256527 33 100.0 34 ................................. CCCATTGCGCAAGTAATACCATAGGATACAAGAC 256460 33 100.0 34 ................................. CTCACAAAGTCGTAAGAAGATGAAGTGTTATCAC 256393 33 100.0 35 ................................. TTTTTGTGGGTGTAGGTGGTGTAACACCTCCGTCA 256325 33 100.0 35 ................................. CTGCATATGATAAGATGTTGCTAATACCTTAACGC 256257 33 100.0 37 ................................. CTAACACCATCATAATCGGGATGTTATGCGAAAGCAC 256187 33 100.0 35 ................................. TCGTATCTCGTACTTTGTCCGTACCTCTCCTGTAC 256119 33 100.0 35 ................................. AAATTTTCTGCAGTCATTGTGGTGCAACAATTTAT 256051 33 100.0 35 ................................. ACCTAGATATTTTGTTGCCCTCTGTCCGTGATATT 255983 33 100.0 34 ................................. CCCCATTTTTAAATACAACTACATCACCAATATG 255916 33 100.0 36 ................................. CATGAAGCCAATAAGTGCGTCAACTTCGTTCGGTAG 255847 33 100.0 33 ................................. AGCAGTGGTTAGAACAAGGTCTAATTAAAATAG 255781 33 100.0 36 ................................. GGAAATGTTGGTGACAAAAAAGAAATAAAAGAAGTA 255712 33 100.0 34 ................................. TATCACATCATCACAGTGTATTGTGGTTATTGCC 255645 33 100.0 34 ................................. TGGTGTGGAGGTTTAATCGTCGCTTTGCAGATTG 255578 33 100.0 35 ................................. AATCTTTGCTAACCTTTCGGCAATAGTAGTTGCCA 255510 33 100.0 34 ................................. TATCACATCATCACAGTGTATTGTGGTTATTGCC 255443 33 100.0 34 ................................. TGGTGTGGAGGTTTAATCGTCGCTTTGCTGATTG 255376 33 100.0 33 ................................. CAACATGGGTTGACCTAGGAGAAAACGTAGAAA 255310 33 100.0 33 ................................. TAATTCATACTGTTCATCGTCTAATACGATAGT 255244 33 100.0 35 ................................. TTGTCAATCGGCGGAGCTGTTGACGAAATCGAAAT 255176 33 100.0 37 ................................. CACAATTAAAAAGGGTGAAGTAGTACAGTTAATGGCA 255106 33 100.0 35 ................................. ATATAAGGCATGGGTTGCTCAGAATCAAGGACAGT 255038 33 100.0 34 ................................. TCCTGTTATGAGCAGCCTTTTCGTATTGATTCCG 254971 33 100.0 34 ................................. TTAGGCTCCTGCCACATCTGCAATGCCACATTAT 254904 33 100.0 33 ................................. TTGAATACGGCAGCTTCTCTATGATCTCATCCA 254838 33 100.0 34 ................................. GTGGATATACAATGCGTAACCACTGGTTTCTGCG 254771 33 100.0 35 ................................. CCAGCCATCCGCCAGCTCCAGCTCCGCCTCTGTAA 254703 33 100.0 34 ................................. AGTTGCTACTGCTTGTGATGGCGAAGCCCCCGTT 254636 33 100.0 34 ................................. GTCAATGCGAATCAACATGTTGTGACGCATTGGG 254569 33 100.0 33 ................................. CACATCTGAGATATCTGGGGCTCCTGCATCCTC 254503 33 100.0 36 ................................. ACCATACACAGAGAGCTTGCGGAATGCGTCCCTGCA 254434 33 100.0 35 ................................. ATTAACACTTCTTTTCCTTTCTTTCGCAGCTTTAC 254366 33 100.0 35 ................................. TCAAAACGGCGATGCTATCGTTCTGGTCGAACACA 254298 33 100.0 34 ................................. CTGTTTGGTAAGGTGCAAGATATAGTTATATCCG 254231 33 100.0 34 ................................. GTTCTCTTGATACCGCTTCTTGCTCCGCTATAGA 254164 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 38 33 100.0 34 GTCTAGCCTCTCCTGAGGCTAGTGGATCTAAAT # Left flank : TGAAGAAGGTGTTTTTCTGTTCACAACGAAGACCTGCCCAAATTGTAAAATAGCTGACACCTGGCTGAAAAGCGCTGGAATATCCTATGAAAAAGTGGATGCCGAGGAACAGGCTGAATTAACAAAAAAATTCTCAATTATGCAGGCACCAACGCTGGTCGTATGCAGAGATGGAAGCTGTGAAACATACAGTAATGCATCCAACATTCGTAAGTACATTGATATGATGCAGAAAGCATAAGCAAATAAGAGGATATATTTCATACTGGAATGTATCCTTTTTATGTATTTGGAATTTTTTCTGTTATAATAATAGTAGATGGTTATCCCGCTAAATAATCCAGCGCGAACCATAAGCTCACATGAATTCCCTGGGAGGTTCGCGCATCATTTTGTTCAAATTCACACAAATGTAACAATTTCAACAAAATTTTCATTAACCAAAGTTTTATATTTGTGTAAATTTGTTTCATTTAGGGGATTTCATGGGATTTTTCACG # Right flank : AATCCTTCTAATCAGGTGCTCACTAAGCGATACCCCCTAGTCTCTCCTTAGGCTCACAAACCAAATAATAAACAATACTCCAGTAATACTTTCTCATCACTTACCAGAAGGATTGCTATATGGAGTAAAATCAGGCACCTGTCCATTCACAATCTGTACAACCAACGGTATCTCCGTTTTCGTCTCCAGCTCTGACGTACTCAAAAAAGTTATAACCTGCGCATTCACCTTAACAACAAGTGATATTTTAATCATGGTGTTGTTGATTCCATATGGCTTTGATTCCGTTTTTATCTCTCCTGTAACATCATTCAGCATCCGCATACGCACTCTGATTTTCGGCCCCTTATCATATAAAAAGAAAATATGACTCAGATAACCTGCCGGTACTTCATACAAAACTCCATCCTCATAGAAGACATCCTTCGTCGTAGGATCCTTTTTACCATCCTGTGCAGCCAGCAGTGATTTATCAATCGTATTCAATGCCGAATACAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCCTCTCCTGAGGCTAGTGGATCTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: R [matched GTCTAGCCTCTCCTGAGGCTAGTGGATCTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.10,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 155221-153139 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHIL010000006.1 Clostridium butyricum strain 4928STDY7387864, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ===================================== ================== 155220 34 100.0 34 .................................. TCCTTTACTAATCTAATTCTAACTCGTACTGTTC 155152 34 100.0 34 .................................. CTTTCGGAATATATACATAGTCATAAGTGTTTAA 155084 34 100.0 35 .................................. CGTTAAGGCGGAATTATCAAGACTAGGTTTGTTAC 155015 34 100.0 34 .................................. GTTTGGAAGGTAAAACAATTTTGACGATTTTTCG 154947 34 100.0 33 .................................. ATCTTTCGCTTCTTTATAATTTCTTGCGTAACT 154880 34 100.0 34 .................................. CTGATGTGGATGCTATAATGTTTGACGAGTTTTT 154812 34 100.0 34 .................................. ATAGCACACCATAAATAACACCGCTAGCTTGTCG 154744 34 100.0 33 .................................. ATTTTGCCAGTATTTAAATACATCGTCTTCTAA 154677 34 100.0 34 .................................. CAACATGGGTTGACCTAGGAGAAAACGTAGAAAT 154609 34 100.0 35 .................................. ATCATCATTGGTACGCCCTCTCTTAGTAAATCCTC 154540 34 100.0 35 .................................. CTTTAAGCGCCGTTACTAATACGAACGCTTATATG 154471 34 100.0 34 .................................. CAAGGATGGTGTTATCAAAATGATGAGGATGATT 154403 34 100.0 34 .................................. ATTATTATATGAATTAATATATCACCTAATTTTA 154335 34 100.0 34 .................................. TTCTATTGTCTGGCAATCACAAATAACACGTTTA 154267 34 100.0 37 .................................. ATCCCGTATATCCTCACACCAGAAGTACATGATAAGG 154196 34 100.0 33 .................................. TTATCCTAGATAATGATAGAACATATCACATCG 154129 34 100.0 35 .................................. AGTAGGCTTGCTACACTGTCGTTCGTTTTCTCTAC 154060 34 100.0 37 .................................. GTTTGAAGTAGAGACGATAAAGCCTTTGAGTTTGAAA 153989 34 100.0 34 .................................. ATGTCTTCCGTAACTTTACTCTCTGGCAGTTTTG 153921 34 100.0 34 .................................. ATAATACTCCTCTAGATATTGACGCCCACGAACC 153853 34 97.1 35 ........................A......... TGTAGGCGCACCCTCACTACTTGTGGCCGGACCAG 153784 34 100.0 33 .................................. CTCCTTAGAAAGTGTAAAAAACAAACAGACAAC 153717 34 100.0 33 .................................. ACCTTTTCCGTATCCTTGAATGTGATTGACAGG 153650 34 100.0 34 .................................. TCTGCTTCAGGATCCGGAGCGGAGCCTGTCGTCG 153582 34 100.0 34 .................................. GCTTCGATGGTGATGGCAGCACCGCCTTTCTTCA 153514 34 100.0 33 .................................. CATGAGGTCATTCAAGAAGTCAGCACTGAATAC 153447 34 100.0 35 .................................. ACATCAATTCCTGTACCGCCACGTATAATCTTTGC 153378 34 100.0 33 .................................. TTCCTTCGTCGGTTTTCGTTTCCCTGCCGCCAG 153311 34 97.1 37 ........................T......... TGAGATTTTAGAAATCATTGCAACTTACATTCCAGAC 153240 34 94.1 35 .C......................T......... TTCCAGCCTTTATCGACAGTATGATTGAATTGTCC 153171 33 76.5 0 .C..........TT.A.......GC....-...C | ========== ====== ====== ====== ================================== ===================================== ================== 31 34 98.9 34 GTCAAGCTCTTTCGCGGAGCTTGTGGATCTAAAT # Left flank : ACTTGGTGCTATGTTAGGGGATCCTATTGTAAAGTCATACACGGCTTTCCCACTAGCCAGCATGTTTTGTTTTTCTTCATCAAGCCTGCTGAAAACACCTTCCGCAAGTAAATCCATTCGTTTGGAAAATTTCATATTCTCCCTCTTTCCTGATATTTCATATTTCTCTCATTATAAAAGAAAAGACCGGTCCCTTCAATAGCTGATGGGTGAATTTCACAACCTTCGTATGGTGTACACTAACAGATTCTAAAAACTGACCTCAATTACATTTTTGTTTAGCACTTTGTAAAGTTTCTGTTATAATAAAAGTAGAGATATCATATCCACTCACATGTTCTTTGCGCGAACCCCAAGCTCACATGATTTTCCAGGGAGGTTCGCGCCACATAATTGTGTTTTAAAACAAAATGTAACAATTTACAATAAAAGTACGATAGATAATTAAATGTAAATAATATTTTTTGTTACATTCGGAGTGGTTTATCACAAATCTCGCA # Right flank : AGCTCAGTACAGATTTTGCATTCCTACACACTACTTCCCATCCAATACCATTTGCAATCTCTCTCTAAACAGCGTACAATAAACACATAAAGTAAACGCTTACAGGAAGGAGGTTTTTTATATGAAATATGTATGCGAAATATGCGGCTACATGTATGATGAAGCTGTTGAAGGCACCTCCTGGGCCAACCTTGATAGCACATGGAAATGCCCGCTATGCACTGCTCCAAAGGAATGCTTTAAAAAAGTAGCATCAGAGGAAGACGCGTCAGCTACATCCAAAAGCAACGATGCCACCTCCCTTGCCATACAGAAAAATGCCAAAAAGGAAGACACCCTGGAAACCAGCATGTCCCTCATTCATGAAATGGCTATTCACAACGCCAGCCGTATTGAAGCAATGCGCACACACAAATCCGTACCAGGATGGGACGACATCCTGCTATTAGGAGGACAACTCGCTCACCCGCCACTTGCTGATAAAGCTGATGTTGATACAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAAGCTCTTTCGCGGAGCTTGTGGATCTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.94%AT] # Reference repeat match prediction: R [matched GTCAAGCTCTTTCGCGGAGCTTGTGGATCTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.90,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //