Array 1 1371232-1370537 **** Predicted by CRISPRDetect 2.4 *** >NC_008786.1 Verminephrobacter eiseniae EF01-2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1371231 36 100.0 30 .................................... TGGCAGTGTCGCCGGCCTTGTTCAGCTTGC 1371165 36 100.0 30 .................................... GATCTGCAGGCGTCATGGGCACAAGTCATG 1371099 36 100.0 30 .................................... TTAAAATGAACTTTTCCCATGGGGTGAAAT 1371033 36 100.0 30 .................................... AGACGCAAGCCGGGCTTTTAGCGTCATGTC 1370967 36 100.0 30 .................................... CAGGCCGAGGCCGATATGGCATGGAAACGC 1370901 36 100.0 30 .................................... ACGCGGCATCGACCACTGGAGCAGGAGCAG 1370835 36 100.0 30 .................................... TTTGATGGATTAATCAAATTGACCCTTCTG 1370769 36 100.0 29 .................................... GCGGAACCGTCAAGGTCGGCCCTGGCCTT 1370704 36 100.0 30 .................................... CGCAGCGCACAACACGTTGGATTGAATCTC 1370638 36 100.0 30 .................................... AACTCCTTGTTTGATGTACTTGCTAATGCC 1370572 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 100.0 30 GTTCCGGCCAGTGCGCATATCCCAGTGAGCTACAAT # Left flank : CCGCCCGGCCAAGAGCCGCTTGTCGGTCTGACGGGCGGTCACCACAGTGAGACCGTGGGCGCGCTGGCCGTGGCCAGACATCGCGCCGCCTACGCCCCGCTGGTGCGCCTGGCCGTCACCGTGCCCCGTCCTGACGCACGCGGCGCAGGCACCCGGTGAGACACCGCAACCGGGCGGAGGATGTGGTGCAGTTGCTGCAAGCACTGCATGGTCTGGCACGCAGCGCCGCAGCGCCAAGGTAGCCGCCACCCAGGCGCCACTACCACAGGGCAGAATTTGTCAACAATCAATGGAATATGTTTATGCCCGGTATCTGAATGAATAGGTACCGAAGATGCAAGAAATCGGAAAACGATTACGCGATGACCAATGGGAGAAATTGCCTGCGTTATTCTACTGGGTAAACTCGGCGATCCTGGTGCGACCGCACAGGACCATCAGCTATTTTTGGAAGCGGTGTTGTGGACCGTGCACACTGGTTCACCATGGTAAGAATTCAC # Right flank : CTCAATGCGCTAACCGATTGATTCTTAAGGAAATTTTCGTCTTCCGAGGACAGGAAAGTCGCCTCATGGTCTAAAAAAGGTCGAACTGATCCGGCGCTTTTTGCGTGGGTTGCCTGCTACGTCCGCGGTAGGTGATGGCGCGTTCGTATTGCTTGTCTGTGAACTGAAAGATATGCACTTTGCCGCCGGAAGGCAAGGCGCGCTCCACTGTGCGGCACAGGGTGTCCACTTGGGTCTGGCTGGCGCAAAAGCGCATGTACACGCTGAACTGGCTCATCTCGAAGCCCATGTCGAGCAGCGCGTTGCGAAACTGCGTGGCCGCTTGGCGCTCGGCTTTTTCTACCACCGGCAAATCGAACATCACCAGCATCCACATAAGTCGGTACCCGGACAACATGGCGCGGCTGGCAAGGGGATCAATCTGGCTCGAAGCTGCCAGCCAGCGCCAGCGGCAGCCCCGGCAAGGGCAAATCCAGTTTGGCGCGTTCGCCCAGGTACAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCGGCCAGTGCGCATATCCCAGTGAGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 1611246-1608574 **** Predicted by CRISPRDetect 2.4 *** >NC_008786.1 Verminephrobacter eiseniae EF01-2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1611245 28 100.0 32 ............................ AGGAAAGATTGATGATGATATCCCCCTCATGG 1611185 28 100.0 32 ............................ GATACCGTCGTTGCGCACGTCGGGAAAGAAGC 1611125 28 100.0 32 ............................ AAACAGGAACAGGAACAGGAATCAGAACAGCC 1611065 28 100.0 32 ............................ TTGATGATGTTGTCCAGATCTGGCCTGCCCGT 1611005 28 100.0 32 ............................ CGTCGCCTGGCTTGCTCAAGCGCCGCCGTTCG 1610945 28 100.0 32 ............................ AATCGGCTGGTCGATCGAGAAAAAACGGGACT 1610885 28 100.0 32 ............................ ATGGCTTCGTAGTGCAGCACGTAGTTCAGGCC 1610825 28 100.0 32 ............................ CAATCCCCAAAGCGTTCCAGAATCCCGGCATC 1610765 28 100.0 32 ............................ GGATGAATCGTGCCGTGTGCGCACTGTGTGGG 1610705 28 100.0 33 ............................ AATGAAGTTGGGAGCCACGGTGCTTTCCTTCGC 1610644 28 100.0 32 ............................ AAGCAAGAACAGGAATTGTGGTTGGAGAGGCT 1610584 28 100.0 32 ............................ ATTACAGCACCAATGGGCGGATATGTTATCTC 1610524 28 100.0 32 ............................ AATCACCTGATGAACCCGATGTTTGACGATTA 1610464 28 100.0 32 ............................ TGCCCCGGATATCTGCGACCGCAATGGCGACC 1610404 28 100.0 31 ............................ ACGCCAACAAAGTGCCCGGCGCCGCGTCAGA 1610345 28 100.0 32 ............................ AATTTGCTTTCCGGATCGTCCCGCACCCGCAA 1610285 28 100.0 32 ............................ GAAAAGACGCACGCTACTTGATCACGCACGAT 1610225 28 100.0 32 ............................ AATTGGGGGATATGTTATCTCCACAATCTCCA 1610165 28 100.0 32 ............................ ATCGGGAACGCAGCAGCAGGGCGCGCACAATA 1610105 28 100.0 32 ............................ ACACGGCCCGGACGATGCCGGGATGGCGGCTA 1610045 28 100.0 32 ............................ ACCAAGCGATACTTCGGGGTATCGATATCGAC 1609985 28 100.0 32 ............................ GTTCAAAGTCAGCGGCGACCGGATTTCCCTGT 1609925 28 100.0 33 ............................ CGGGTGTATGGGGAAACATGGCGTACATTCAAG 1609864 28 100.0 32 ............................ AATTACCACCTAGGGCCAGTAACACGTCCGGC 1609804 28 100.0 32 ............................ AACCTAGGAACCGTTATGAACGTAATCCACGC 1609744 28 100.0 32 ............................ AGTCTGGTGCTTACGGGTGCGGGATGACCCGG 1609684 28 100.0 32 ............................ GATGAAGTTTGGAGACACGATGCTTTCCTTTG 1609624 28 100.0 32 ............................ CGGACGATCTACGTGCCCTGATGTGTGCAGGC 1609564 28 100.0 32 ............................ GTATGGCGTGGCGTGAAGCATCAAGCCGTCGG 1609504 28 100.0 32 ............................ ATCATGAACGTCATTCACGCAATCACCGAAGC 1609444 28 100.0 32 ............................ TTCAAAAGAATCAACATCGGCACGGCGCCGTC 1609384 28 100.0 33 ............................ AAGCAAGTGCACGCTGCCGGCCCTGATTCGTAT 1609323 28 100.0 32 ............................ ACGGTGGTTCCTTTGCGCTGCGTGCAAAATGC 1609263 28 100.0 33 ............................ GTAGTTGCCCGATGCGAAGCGCCCGGGCGTGTA 1609202 28 100.0 32 ............................ GATTCCAGGCTCTCCAGCGTGCGCTTGCCTTT 1609142 28 100.0 32 ............................ TGACGGCGCCGGAATACTTCGGCCCGATCGTG 1609082 28 100.0 32 ............................ GAGGAGGCTGCGCGGTTGCAGGCCGCCGAAGC 1609022 28 96.4 32 .................T.......... AGGATGTACCGGGCGTAATACGCGCCGTCCAA 1608962 28 100.0 32 ............................ GCGTAGACGGCAAGATGAGCAAGGCCGGCGGC 1608902 28 100.0 32 ............................ GAGTGGTGCAGCGTTGCGCGCGCGCAGTGGAT 1608842 28 100.0 32 ............................ TTTTCACGCGCCAATCGGCGGCCGATGGTCGC 1608782 28 100.0 32 ............................ GTCAGTGGCGCATTGGGGGACGCCATGCAACC 1608722 28 100.0 33 ............................ CGCGTACCGATGATGAAGTAGGCACAGCGCTAA 1608661 28 92.9 32 ...........A........T....... TTTTCAAAAGATACCTTGCCGCATTTCAACTC 1608601 28 82.1 0 .C....C....A.C.....A........ | ========== ====== ====== ====== ============================ ================================= ================== 45 28 99.4 32 GTTCACTGCCGGATAGGCAGCTCAGAAA # Left flank : CCGCACACGAGGCCGTTCGCCGAAGGGACAGCGTTGCATAGCCAGTGTTCCACATGGTCACCGGAAAATCACCACCTTCATTGCCGGCTTGCGGGTAAACGCCGTGACCGCCCCAATGGTCTTGGATGGCCCTATGGATGGCGAAGCATTCCTGGCCTATATACAGCAATTTCTGTGTCCTACGCTGCACCCTGGTGATATCGTGATCGCTGATAATTTGTCCAGCCATAAAGTCTCTGGTGTGCGTGAGGCCATTGAGGGGGTTGGTGCAACATTGCGTTATCTTCCGCCTTACTCACCAGATTTGAACCCTATCGAAAAATTCTTTTCCAAACTGAAAGCCCTGCTCAGGCAAGCTGAACAGCGTACTGTCGATGGACTTTGGAATACCATCGGGCACCTGCTTGATTGTTTTACACCACAGGAATTGTCCAACTACTTTTCATCTTCTGGATATGTTTCTACTTAAATCAAAAATTCTCTAGTATCCCCCCGGGCAG # Right flank : CCCCCTCCATGCCCTCGCCAGCACCTGCGGCCAGCGCGCTGCTGGCGTGCAGGCAGATGGCCGCTGCTGCTGCGACGTTCAGCGACTCCTGGCCTCCGGGCTGGGCGATGCGGATGCGTAGTGCGGCCTTGGCGGTCAGCGCGGGGGTTACGCCTTGTCCTTCATGGCCCATGATCCAGGCGCAGGGCCAGGGCAATGTGGCGCGGTGCAGGTATTCGCCGGCATGTGGACTGGTCACGAGCATGGGCAGTTGCAGCGCCTGCAGTTCTGCCGGCCCGGCGGCCTCGATCAGATTCAGCGCGAAATGTGCGCCCATCCCGGCGCGCAGCACTTTCGGCGACCAGAGTGCGGCGCTGCCTTTGAGTGCCAGCACCTGCCGGAATCCGAAGGCTGCTGCACTGCGCAGGATCGAGCCCATGTTGCCGGCATCCTGCACCCGGTCCAGTACCACGGTGGCGGCGCCCGGTTGCAGGCTGGCGGGCGCGGGCAGGTCCAGAATG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1627248-1612299 **** Predicted by CRISPRDetect 2.4 *** >NC_008786.1 Verminephrobacter eiseniae EF01-2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 1627247 28 100.0 32 ............................ CGCGCAGCAGATTTCTCCAGCCGCTTTGGCAT 1627187 28 100.0 32 ............................ TTATAATAGAATGTCCTGATAATGATAATCGG 1627127 28 100.0 32 ............................ ATAATCTCCGCCGCTGATCAATGAATATCCGC 1627067 28 100.0 32 ............................ TCGTTGGAAAGCCAGGGCAAGATTGCCGCACG 1627007 28 100.0 32 ............................ TTTGCCGATAGATTGCTGCGCAGATTGCGAAT 1626947 28 100.0 33 ............................ TAGGGTCAGGGTCAGGGTCAGGGTCAGGGCTGC 1626886 28 100.0 32 ............................ ACTCAGCGAAGAAAATGCGCGTGATTTTATCG 1626826 28 100.0 32 ............................ CGCGCAGGGCGGGCTGGATGTCATGTCATGTC 1626766 28 100.0 32 ............................ AGGTGCCGTGGCCGGGGATGCGGCCCACGGTT 1626706 28 100.0 32 ............................ CTATAGACGTGACGTTTTTGGGGTGCTACAGT 1626646 28 100.0 32 ............................ ACCCGGCGGCGGTGGAAACGTGGCGTACATTC 1626586 28 100.0 32 ............................ TTGATACGATCTACGCCTTTCAACGAAGGAAC 1626526 28 100.0 33 ............................ CCTCGAAGCCGGCGATGAAAAGGCCGGCCGAAG 1626465 28 100.0 32 ............................ AGGGGAAAATCATGCTCACTAATCAAGAAATC 1626405 28 100.0 33 ............................ TTCGTTGTCGCTGAAGTGATCTTCATAATACGT 1626344 28 100.0 32 ............................ GTGCCGAACCCCAGGGCCAAGCCCATCGCCAT 1626284 28 100.0 33 ............................ ACAGGATGATCACTTAGGAAAGCCTAGCAAAAC 1626223 28 100.0 32 ............................ TTCACGTACACCCACCGCCCGAACTGCCCCGC 1626163 28 100.0 33 ............................ AACGAGGCCCGGCACGCTAGGGCCATTTGCAGC 1626102 28 100.0 32 ............................ ATTGCCGGGCCGAAGCCCGGCATTATCTCATA 1626042 28 100.0 32 ............................ ACCGCGTCGGTGGCGCGCCGGGGGTTCCAACT 1625982 28 100.0 32 ............................ GCGTTGAGCATGCGCACCAAGGTCGACCGGCA 1625922 28 100.0 32 ............................ AGGGCATCGGTGCAGCGCGCGGCATCGGTGCG 1625862 28 100.0 32 ............................ CCATCCGCCGCCGCCTCTGATCGAGCCGTTGC 1625802 28 100.0 33 ............................ AAACGTGCCCGCTTTGCAAAAAGCGCCGCCGGC 1625741 28 100.0 32 ............................ ACTATCGCTAGCCCCCGGCGGTCATGCCAGAT 1625681 28 100.0 32 ............................ GATCGCAATTCTTGCAGCGCAAGATCATCCCA 1625621 28 100.0 32 ............................ GATAGCTTTCGATAGCGAAGCTGTCATTAATC 1625561 28 100.0 33 ............................ CGCGCATTCATATAAAGAAACGCTCGGCTGCGT 1625500 28 100.0 36 ............................ TGCACGCACGCACGCACGCACGCACGTGAGCGCACG 1625436 28 100.0 32 ............................ TACGATCTGCTGTCAGACTAGCACGAATCATC 1625376 28 100.0 32 ............................ GATGCATGTGCTTGTGTCGATATTATCAGTTA 1625316 28 100.0 32 ............................ CATGCGCCGCCCGCCGATGCGGCCCTTAGCGC 1625256 28 100.0 32 ............................ AAAATCCCGTCGAGAAAGAAGATACAGACTGC 1625196 28 100.0 33 ............................ CCGGCAGTGGCGGCTACTGCATGGCACATATTG 1625135 28 100.0 32 ............................ TCGTTGCGTGCAGCACGTACGTGACTGATGCC 1625075 28 100.0 32 ............................ AAGTATTCAGCTTGTCGAATATTGCAATCAAG 1625015 28 100.0 32 ............................ ACCGCGTCGGTGGCGCGCCGGGGGTTCCAACT 1624955 28 100.0 32 ............................ ATCTTCATGGCCGAAAAGATCACTTTGATATT 1624895 28 100.0 32 ............................ GAACTCGGGTTCGATGCGGAATGGGGCTGTCT 1624835 28 100.0 33 ............................ CTGGTGCTGAACGAGGCCCGCAAAAACCGGCCA 1624774 28 100.0 32 ............................ ATTCGTCGTCTCCGTATTTCCATTTGAAAACT 1624714 28 100.0 32 ............................ TCGGCGCAGCGCGCGGCCTCGGTGCGTGCAGC 1624654 28 100.0 32 ............................ GAACCGAATGCGGGTTGAGGCCCGCATTCTGG 1624594 28 100.0 32 ............................ AGATCGTGAATGCATCAGACTGCGCGCCAGTG 1624534 28 100.0 32 ............................ TCTTTGCCCACGAACTGGGCAATCCAGATCGT 1624474 28 100.0 33 ............................ GCGATGGCGATGGGCTTGGCCCTGGGGTTCGGC 1624413 28 100.0 32 ............................ AATTTGGGATGACGTGCGGACTTTTGACGGAA 1624353 28 100.0 32 ............................ AGCCTGCGCGGTACAGAATTGACCAATATATC 1624293 28 100.0 33 ............................ ACTGATACGCGACGAAGTAGAAATCGCAGCCGG 1624232 28 100.0 32 ............................ GGTCAGATGCGTGATCGGACAATTGCCGGCCT 1624172 28 100.0 32 ............................ ACAACGCGGGGCACGCCGTAGTACTTGCTGGC 1624112 28 100.0 32 ............................ AGCTGCATATCTCTGTGACTTTCGCGCAGCGC 1624052 28 100.0 32 ............................ AACATGGCGGTTTGGCCGATTTCAACGTAAAA 1623992 28 100.0 32 ............................ TTCTCATGATGTGCGATGTGGCATCTGCTGCA 1623932 28 100.0 32 ............................ TCACGATGGGGAAACGCAAGACCGGTTGCACG 1623872 28 100.0 32 ............................ ACGTCGGGCCGCAGCTAGCGGGCGGCGAGCAG 1623812 28 100.0 32 ............................ ATCGCGGGTGATTATGGGATAAGCCCTGATTT 1623752 28 100.0 33 ............................ CGGTACCGAGCCACCTGCGCGGCGGTGGTCGCC 1623691 28 100.0 32 ............................ ATCTGCACCTGGTATTGAAGCGGCAGGTCACT 1623631 28 100.0 32 ............................ ATCCGAGCAGGTCGGCAGAAAGAATGCCTCCA 1623571 28 100.0 32 ............................ TGCGCCGCCCGCCGATGCGGCCCTGGGCGCGC 1623511 28 100.0 32 ............................ ACCGCCCGACAGAGCGAACAGCGTTGCTTATT 1623451 28 100.0 32 ............................ GATGCCCTGGCGCTGCTGGGCAGCAAATGGCG 1623391 28 100.0 32 ............................ ACTTTGTACGAATCGAAATCCGCATTTTCCCC 1623331 28 100.0 32 ............................ GCTCACATATTCGCTCATGATTTTACTCCTTC 1623271 28 100.0 32 ............................ CGATGCTGACCCGCTGCGGGTCGCTGCGGCTT 1623211 28 100.0 33 ............................ CTGGCGGAAAAGGCTGATCGGCATGTGATCGAC 1623150 28 100.0 32 ............................ AAGCGTTTGGGTATACGGCGAATCGGCTTGGT 1623090 28 100.0 33 ............................ CTCGATCAACGCAAGCCCGACCTGAATCACCGC 1623029 28 100.0 32 ............................ AATGATGCGGGCCATGTGTTTCCACAGCCCGC 1622969 28 100.0 32 ............................ TCCTTGGCGGCAAGCGCCGCGCGGGCATCATT 1622909 28 100.0 32 ............................ GAATGCGGGTTGCGGCCCGCATTCTGGACGAT 1622849 28 100.0 32 ............................ ACGCATATCGCGACGCTGTCGCGAAACACATT 1622789 28 100.0 32 ............................ TTGACCTTGACCTGCATCTGCACGTGCGTGCG 1622729 28 100.0 32 ............................ GGTTGCCGCGCCAGCGCCTTTGCAGCAGCCCG 1622669 28 100.0 32 ............................ GCCCCGTCAAAATGCGAAGCGTGCCAGCATTC 1622609 28 100.0 32 ............................ GCAAGCCCCTAAAGTGTAAAACTTCGCAACCT 1622549 28 100.0 32 ............................ TTGTCGCTGAAGATTATGCCGATGGCGCGGGC 1622489 28 100.0 32 ............................ ATACATGTCCCGGTGGACTTGCAAGCCCCGGG 1622429 28 100.0 32 ............................ CTATGGCGTGGACAATGAATACGCCCGGGCTA 1622369 28 100.0 32 ............................ TTCGCGAATCAGATTCTGCGTGCTTACCCGCC 1622309 28 100.0 32 ............................ CGCGGCATAATCTTCAGCGACGAGTCGCAGCG 1622249 28 100.0 32 ............................ AAGACGCATACTGTCGTCGTCTTTTGACACTT 1622189 28 100.0 32 ............................ GATCAAGACGAGCGCAACAGCAAGAACCGGCG 1622129 28 100.0 32 ............................ ATATCCAAAGCCCACGCGATTATGAGTAGCAC 1622069 28 100.0 32 ............................ GGCCCTTCTACCTGCCACGGGCCGCTAGAAAG 1622009 28 100.0 32 ............................ GCTCATGGCGACCTGGTCAGCGATTGCGCACC 1621949 28 100.0 32 ............................ ACCAGCGGCGCCCATTCAGCGCCCAGCAGCGC 1621889 28 100.0 32 ............................ GCGCACCGCGCATGCCGCGAGGCCGTCGCCGC 1621829 28 100.0 32 ............................ TATCCGCCCGGTGTATGGGGGAATATGGCGTA 1621769 28 100.0 32 ............................ TCGTCGCTGAAGATTATGCCGATGGCGCGGGC 1621709 28 100.0 32 ............................ GAATGAATACGGCTGATATATGAGTGATATAC 1621649 28 100.0 32 ............................ TTCCTACGGCCTCCTGGCGGCGATAGGGCCGT 1621589 28 100.0 32 ............................ ACAGGATGATCACTTCGGAAAGCCTAGTAAAA 1621529 28 100.0 32 ............................ AGATTTCGATTCGTACAAAGTAGTCTGTAGAA 1621469 28 100.0 32 ............................ AGATTACAAGCGTGTCGCCTTCTTTCAATTCC 1621409 28 100.0 33 ............................ CAGGCGGCGCTGCGCGACGATCTTGCGCGCAGC 1621348 28 100.0 32 ............................ GGGGTGCTGTCTTCAAACGACGGGGAGGTGCC 1621288 28 100.0 32 ............................ ACATACCCAAACGCTTGGCTCTAACACATCCC 1621228 28 100.0 32 ............................ AGCAGCAGCACGGCGCGGCAGCTTGCCGGTCA 1621168 28 100.0 32 ............................ AGCTTGCACGTCGGTCAGCTCATCGCGCAGCT 1621108 28 100.0 32 ............................ CTATAGACATGACGTTTTTGGGAGTGCTACAT 1621048 28 100.0 33 ............................ TTGATTCTTTCGAGGTTACCAATGAATTTTTGC 1620987 28 100.0 32 ............................ GGTGTCCAGACCGCTGACCAGGCGCGGCAGCT 1620927 28 100.0 32 ............................ AGGCGGCGCTGCGCTGACCCTGACCCTGACCC 1620867 28 100.0 32 ............................ GAAATTGCTGCTAGTTCATAATGACATGACAT 1620807 28 100.0 32 ............................ AAGCGTTTGGGTATTCGGCGAACCGGCTTGGT 1620747 28 100.0 32 ............................ GTACGCGCCAATTTCTGTAGTTTCTGTGTATG 1620687 28 100.0 32 ............................ ACAACGGAGCGGCGGAAAAGTATAAACGAGAG 1620627 28 100.0 32 ............................ GATGCAGGTGCTGGTGTCGATATTCTCAGTTA 1620567 28 100.0 32 ............................ AAGCGTTTGGGTATTCGGCGAACCGGCTTGGT 1620507 28 100.0 32 ............................ TCATTCATGACCATGCGCCGCCCGCCGATGCG 1620447 28 100.0 32 ............................ ACCGACCCCTTCAAAAGAATCAACATCGGCAC 1620387 28 100.0 38 ............................ TGACCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGGATG 1620321 28 100.0 32 ............................ CGGAGGCCGGCTCGGGTTGGTTAGTTGGCTGT 1620261 28 100.0 32 ............................ ACACGGCCCGGGCGATGCCGGGGAATGGCGGC 1620201 28 100.0 32 ............................ GCACCCGCAGGCACCAGGTGGGATCACCAACA 1620141 28 100.0 32 ............................ TCTTTCAACCGCCTTCCGCGCGCGGAGACATT 1620081 28 100.0 32 ............................ TGCCCTGCCGCGCCAGAAGGCCCTAGAAGGCC 1620021 28 100.0 33 ............................ CTGCACGCTCCCGACTTTGCTGCGCGTGCTGAT 1619960 28 100.0 33 ............................ GGTTTTTGCGCTACTGCTCATTCTGCGCTTAGT 1619899 28 100.0 32 ............................ ACTACTCGCTTCGACAAACAAGCGAACAATCG 1619839 28 100.0 32 ............................ AGAAGCGCAAAAACCTGCACCGTCATCGCAAT 1619779 28 100.0 32 ............................ GCGACGCAGATACATACAGGCCGGGCGTATTA 1619719 28 100.0 32 ............................ CGGCGCTCGACAAAATGTGGGACGATTATCTG 1619659 28 100.0 32 ............................ AGCCCCCGCTTTCTGCCGCAGCGAATATAGCC 1619599 28 100.0 32 ............................ CCGGCGCGGCGGTTATTGCTGATAATCTGCAA 1619539 28 100.0 32 ............................ ATCATGAACCGCACCGACCCCTTCGAAAGAAT 1619479 28 100.0 32 ............................ GAACGGTCGAAAGCGGCGCTACGGCCTTCCTA 1619419 28 100.0 32 ............................ CGATGAGCGCGGGAAGTGTCAAGAGCCGCCGG 1619359 28 100.0 32 ............................ GACGCGGCCCTGGGCGCGCGCAGCGGCCAGGC 1619299 28 100.0 32 ............................ CCTAAATTTTCGATTGATCAACACGTCAATCG 1619239 28 100.0 32 ............................ TGGCGGAGGTGGAAACGTGGCGTACATTCAAA 1619179 28 100.0 32 ............................ AGATTACGAGCGTGTCGCCTTCTTTCAATTCC 1619119 28 100.0 32 ............................ GCGATGTCGGTGTAGGTGCGATTGACCCTGCC 1619059 28 100.0 32 ............................ ATGCGCCGCCCGCCGACGCGGCCCTGGGCGCG 1618999 28 100.0 32 ............................ GATGGTTACTAGTGGCATGTCATGCCCCTTGC 1618939 28 100.0 33 ............................ CGGGTGCGCGTCCCTCATAATAGCGGCGCGATA 1618878 28 100.0 32 ............................ AACGAGATTGTGAGTAGCCCGGTGGCGGGACT 1618818 28 100.0 32 ............................ CTACGGCGGACGGGGTGGCGCAAGGCGCATTT 1618758 28 100.0 32 ............................ TGATGGCCTTCCCTGGCCTTCTAGGGCCTTCT 1618698 28 100.0 32 ............................ AAGCGAAAATGCTTGAATATGCCCACCGATTA 1618638 28 100.0 32 ............................ TACCTGGAGCGCCGGCCTTGCCGCTTCCCGAG 1618578 28 100.0 32 ............................ TACTAGGGGAAAACCCGGTGCAGGGAAAACCC 1618518 28 100.0 32 ............................ AGTATGAGCGCGAAGGGATAGACGCCCATCGA 1618458 28 100.0 32 ............................ GTCATCGTGATCTTCACGCAACATAATCAGCT 1618398 28 100.0 33 ............................ AGTTTCTGAATACCAGAATTTGTACATGATTAT 1618337 28 100.0 32 ............................ TGATCACGCATGACGACGATGGTATGATGCTG 1618277 28 100.0 33 ............................ CACGCCTGCATCAGATTCTGAAGGTCGATCACA 1618216 28 100.0 32 ............................ AGCCCGCGCACTGGGCGCCCCTTCACGTACAC 1618156 28 100.0 32 ............................ ATCATATGAGAGACGGATTATACGGGTTTACC 1618096 28 100.0 32 ............................ GTCCCGAAGTCTTGGAGCAAGGCCAAGCAACT 1618036 28 100.0 33 ............................ GGTCTTCGGGTCGACGTACTTGGGCGCGACCTT 1617975 28 100.0 32 ............................ TGAAACCGCCGCCTACGAGCGCCTGGTGGCGG 1617915 28 100.0 32 ............................ TGCCCGTAGGCCGGATGTCGCCTTCGACGGCC 1617855 28 100.0 32 ............................ GTTGGCAGCAGATTCTATTGTGTGGTATTGAC 1617795 28 100.0 32 ............................ GCGCTTGATCAGCATCGTTTTTATCAACGGAC 1617735 28 100.0 32 ............................ ATGCCGTGGCACGATCACGCCCCTGACGCTGC 1617675 28 100.0 32 ............................ AGAACCGAAACATAATCAATCTCCGGCTTCGT 1617615 28 100.0 32 ............................ ATCAGACTACTATCCCCTACCTTCGCCCTGAT 1617555 28 100.0 33 ............................ GCAACATAATCAGATCGCTTCCGCTGTTCGCTT 1617494 28 100.0 32 ............................ GCTGCCGCGCATGTGCTTGCAGATAATCTGCG 1617434 28 100.0 32 ............................ GCGCTCATCGAGAGCGCTGCGCTGGCGCTTGA 1617374 28 100.0 32 ............................ AGAAAGCCAGGCAAGGCCATCAGACTACTATC 1617314 28 100.0 32 ............................ CCGACGGCCCCAGTTTCACTGCATCAGAAAGT 1617254 28 100.0 32 ............................ GAGATGCAGCACGATTCGCCGGTCACCGCAAA 1617194 28 100.0 32 ............................ TGCGCGCAGGCGCTGCGTGAGCGGGAATCTGA 1617134 28 100.0 34 ............................ GTGGCGCCAAAGTTGGTGCTGCCGGCGCCGCCGT 1617072 28 100.0 32 ............................ GGCGTGCATCACCATTGCCGCCGGCACCACGC 1617012 28 100.0 32 ............................ AGGGAAATGCTGGCGAGCGGCGCGACACTGAA 1616952 28 100.0 33 ............................ ATGCAGGTGCTGGTGTCGATATTCTCAGTGAGA 1616891 28 100.0 32 ............................ GAATGAATACGGCTGATATATGAGTGATATAC 1616831 28 100.0 32 ............................ AGCCCGCTGCGCGACGATCTTGCGCGCAGCCC 1616771 28 100.0 32 ............................ CTCGATCAACGCAAGCCCGTCCTGCATCACCG 1616711 28 100.0 32 ............................ AGGTCGAGCCGGTCGTAGCCCTGGTCGTTGTT 1616651 28 100.0 32 ............................ ATCTGCTTGTAGCCGTCGTCGCGCTCGGCGCG 1616591 28 100.0 32 ............................ GCTCAGTCACGTTTTGTACACGCCAGTATCCA 1616531 28 100.0 32 ............................ ATCATATGAGGGACGGATTATACGGGTTTACC 1616471 28 100.0 32 ............................ GCGTGCGATCTGTTCTTCATTCATGACCATGC 1616411 28 100.0 32 ............................ GTCCAGGTGGCGCCGGTCTTCGGGTCGACGTA 1616351 28 100.0 32 ............................ ATTCCGAATCGCCGCAAACTATTACCTCCGGC 1616291 28 100.0 32 ............................ GTAGGAAGGCCGTAGCGCGGCTTTCGACCATT 1616231 28 100.0 32 ............................ GGCTACTTGATAATGAAACTTTTGGAGAAAAT 1616171 28 100.0 32 ............................ AATTTGAAAGCCCCCGCCTCCGGTGTACCGCA 1616111 28 100.0 32 ............................ GAGTGAATTTCTTGTCGAGCAAGATCATCCCA 1616051 28 100.0 32 ............................ GAACCGAATGCGGGTTGAGGCCCGCATTCTGG 1615991 28 100.0 32 ............................ ATCCGGGAATCTTGATCTTTTCTCCGTCGATT 1615931 28 100.0 32 ............................ GACCAGCTGACGGGGTCTGCTAAGTCATTGAT 1615871 28 100.0 32 ............................ GAATCGAAGACATCCACGGCGCAGGTATGTGA 1615811 28 100.0 32 ............................ CGCAAGAGTGGACGGCGTTGCTTATTTGAGGT 1615751 28 100.0 32 ............................ AATCCTTTGGTTATTCGAACAATATCGTCCAG 1615691 28 100.0 32 ............................ ATATTCAGCCCAGGACGGTCCAGCTTCGTGCC 1615631 28 100.0 32 ............................ ACTGCCGCTGTCGATCTGTCAAACCGTGGGCC 1615571 28 100.0 32 ............................ GGGTCGGTCTCGTCAGTCGCGTGAATGCAGAA 1615511 28 100.0 32 ............................ TGAATGGTCGAAAGCCGCGCTACGGCCTTCCT 1615451 28 100.0 32 ............................ ATAGTCTCCGCCGCTGATCAATGCATATCCGC 1615391 28 100.0 32 ............................ ATCCTGGAATCTTGATCTTTTCTCCGTCGATT 1615331 28 100.0 32 ............................ CACCAGGTGGCGCTGCGCGACGATCTTGCGCG 1615271 28 100.0 33 ............................ AATGCCCAATTTAGTCGCCATTGAAGCGATAAT 1615210 28 100.0 32 ............................ TCGAAAGAATCAAGGCACCAAAGTGCATCATT 1615150 28 100.0 32 ............................ GTCCGGGGCCTTGCACGCGAATTCGGATTTCG 1615090 28 100.0 32 ............................ ATATTGACATTTTGGCGGCAAAAATTGGTTGC 1615030 28 100.0 32 ............................ AATACCAGACGCGAAACGCTCTCCTGAAACAA 1614970 28 100.0 32 ............................ GAAGCGGACGATGAACCGCTGCTGCTCAGCAC 1614910 28 100.0 32 ............................ ATGTCATCAGGGTTTCTACTTAGATTCGGCAA 1614850 28 100.0 32 ............................ CTCCTGGCGGCGATAGGGCCGTGATGCCAAGT 1614790 28 100.0 32 ............................ TAGCGGATTCGCTGGAAAGAGAAAAAAAGATC 1614730 28 100.0 31 ............................ GAACCGAATGCGGGTTGAGGCCCGCATTCTG 1614671 28 100.0 32 ............................ TAAAAAAAGTTGGTTTCGATTGATCAACACGT 1614611 28 100.0 32 ............................ ACTGGGTGAAATGCAAAGTGATCGGGTTTTGG 1614551 28 100.0 32 ............................ ATATTCAGACCAGGACGGTCCATCTTCGTGCC 1614491 28 100.0 32 ............................ GCGTACGATCTGTTCTTCATTCATGACCATGC 1614431 28 100.0 32 ............................ CGGCGCGCTCACGTGCGTGCACGTGCGTGTGC 1614371 28 100.0 32 ............................ ACCAAAAACGTCATGTCTATAGGGTTTCTACT 1614311 28 100.0 32 ............................ GAAAAAGAAACTTCCGACAATTCGCGAAATAA 1614251 28 100.0 32 ............................ GAACCGAATGCGGGTTGAGGCCCGCATTCTGG 1614191 28 100.0 32 ............................ CCCTCCCGCAAGAGTGGACAGCGTTGCTTATT 1614131 28 100.0 33 ............................ GAAACGCGGGGGTCGCTGTCGTACATGCTCATG 1614070 28 100.0 32 ............................ ACGCGCACGCATCCACGCCCATCCGCTGGCGT 1614010 28 100.0 33 ............................ GTTGCTTTCAGTGTCGCGCCGCTCGCCAGCATT 1613949 28 100.0 32 ............................ GGGTTCGTCATGGGCTTTGGTGTGTCCTGGTT 1613889 28 100.0 32 ............................ ATCGCGGCCGTGGATGCCGTGCAGCGCTTCTA 1613829 28 100.0 32 ............................ GAGCAAGATCATCCCAGTTCAGCAACAACCCT 1613769 28 100.0 32 ............................ ATTTTTGGGAGATTGACATGAATGTTATCTAC 1613709 28 100.0 32 ............................ ACACGCTCGTAATCTGGAAACTCGACCGGCTC 1613649 28 100.0 32 ............................ CACCAGGTGGCGCTGCGCGACGATCTTGCGCG 1613589 28 100.0 32 ............................ GCGTGCGATCTGTTCTTCATTCATGACCATGC 1613529 28 100.0 32 ............................ TTTGTTTGTCGATTGATCAACACGTCAATCAA 1613469 28 100.0 32 ............................ TGCAGGGCCGCTGTCGCTGCGCATATTGATGA 1613409 28 100.0 32 ............................ ATCATCGCTGCTTCGCAACGTGCGGCATCGGT 1613349 28 100.0 32 ............................ CGTCACCGGATACAGTTCGACGCCGGTGATTT 1613289 28 100.0 33 ............................ TTCGGCCATGATGGCGCGCAGCGTGGCGTTCAT 1613228 28 100.0 32 ............................ TTGACGAAAAGGACGTTATTCAAGTACGAATC 1613168 28 100.0 32 ............................ AAAACCCACAGATTATCTGCAAGAACGTGCGC 1613108 28 100.0 32 ............................ GGCAGGGCAGGTAGGCGCGAGACACGTACTGC 1613048 28 100.0 32 ............................ ACCCCAATCCCTTGATCAGCCCAACCGAGGAA 1612988 28 100.0 32 ............................ AAGCCAAGATTGCGGCTCGCCCAGCGGCCAGT 1612928 28 100.0 32 ............................ CCAAAAGTGTAAAACTTTGTATCCTGCCATGT 1612868 28 100.0 33 ............................ GAGTACGCGCAGATTATCAGCAAGCACGTGCGC 1612807 28 100.0 32 ............................ GCGGCACTGTCTTTCGCTTGTTCGTCGAATCT 1612747 28 100.0 32 ............................ ATGCTGGTTCGCCAACAACCCATACACTCGGC 1612687 28 100.0 32 ............................ GAGCAAATCACCGGCGTCGAACTGTATCCGGT 1612627 28 100.0 32 ............................ TGTCCCGTCTTTCGATAGATTATCGCTCAACA 1612567 28 100.0 33 ............................ ATGGTAATGATACCTGAATCTGCTCAGGAATAG 1612506 28 100.0 32 ............................ TTCGGAAAGATGGTCGCCAACAGCGATTTTGC 1612446 28 100.0 32 ............................ AGCCCGCGCACTGGGCGCCCCTTCACATTCAC 1612386 28 100.0 32 ............................ ATATCTGACGGATCAGGGCGCGGCATTCAGTC 1612326 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================== ================== 249 28 100.0 32 GTTCACTGCCGGATAGGCAGCTCAGAAA # Left flank : CCGCGCTGCAACGCCTGCAAGCCTTGTCGTGGCTGCGCGGCATGCGCGACCATGTAAAGACCAGCGAAGTGGCACCCGTTCCCACACACACGCAGCACCGCGTAGTGCGCCGCGTGCAAGCCAAAAGCAGCCCCGAACGCTCGCGCCGACGCCTGATGCGCCGCCTTGAAATCGACGAAGCCCAGGCGCTCCAGCGAATTCCAGACCAAGAAGGACGGCGATTGGCATTGCCCTATCTGCGCTTGCAAAGCGCCAGCAAAGGGCAAGTCTTCCGCCTGTTCATCGAACACGGCCCCTTGCTGGACACGCCATCCCCGGGCAGCTTCGGCACCTACGGCCTCAGCACACAAGCCACGATCCCGTGGTTTTGACCCTTTTTTCCTGCGTGTGCCAGTTTTCCAATAAAATCAACGACTTGCAGGTTCCCCTCAGAAATGGGGGCGCCGGGAAGCGTCTGTTTTTTTGTTTGAGAATCAATGGGTTATGGTGGTTTTGGGATA # Right flank : TGCACAGCGGGCTTTAGAGCATATTTGACTTAAAACCAAACAATTCATGATATGATGCGGCGTCTTTTTTCTGAAGGAGTATGCAATGCAAGCGTATTCGCAGGATTTGCGAGATAGGGTGCTGAAGGCGATAGAACAAGGAGATCGTCCTACCGATATTGCCAAGCGTTTTGAAGTCAGTCGAGTATGGGTGTACCAAGTCAAGACGCGTCTTGAAGAAGGTATTCGACATAGTTTCCAGATTGGCGGACATCGGAAATCTTGCCTTGCTCCAGTGGAGCCTATGTTGCGGGAATGGATTAAAGACAGAGCGGATTTGACACTGCGCGAGATGTGCGAACGGCTGGCCGAGCATGGGATAACGATCAAAGCCCCAGCCCTATGGCACCAACTGAATAAATGGGGTTTGAGCTTTAAAAAAAACTCTGCACGCCAGCGAGCAAGAGCGTAAGGATGTGCAAGCGGATCGGGTTGCATGGAAGGAAAGCCAGCCAGCACTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //