Array 1 181241-181822 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JMES01000015.1 Rhodococcus fascians GIC26 contig16, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                       	Insertion/Deletion
==========	======	======	======	============================	======================================	==================
    181241	    28	 100.0	    33	............................	CGGAGAGACGGTGTTGGCCACCGAGCTCGCAGC     	
    181302	    28	  78.6	    38	............TCT..A.....T.C..	GACTACCTATCGAACGACATTGGGCTCTGTTCGAGATC	
    181368	    28	  75.0	    33	TG.T....T...GGT.............	TCCGAGCAGTGCGGCCAACGCGTCTACCTCTGA     	
    181429	    28	  96.4	    33	.........................G..	GATGATGTGGGTGAACGGGCTCATCGGCCTGCC     	
    181490	    28	 100.0	    33	............................	CGCAGGGGGATTCCTTTCAATTCGGCGTAGTCC     	
    181551	    28	 100.0	    33	............................	CAGTGACGAGCCGAGCAAGCAGCTCAATGTCGT     	
    181612	    28	  96.4	    33	.........................G..	CTGGTTGGTGGACAACGGTTTTGCCGACGCACC     	
    181673	    28	  92.9	    33	.............G...........G..	CAGTGCAATGTTTGCTATCGACCCCGGCAAGAT     	
    181734	    28	  85.7	    33	..............T........TGC..	GACTACCTATCGGACGAGATTGAACTCTGCTCG     	
    181795	    27	  71.4	     0	A...........A.T.T.....-..GAA	|                                     	T [181803]
==========	======	======	======	============================	======================================	==================
        10	    28	  89.6	    34	GTCCGCCCCGCACACGCGGGGATCAACC	                                      	       

# Left flank :   CCGGTGTACTTCACACCAGCATCGACCAACGCCGCCGAAATCCGCCGCTGGCGGGGACTGTCGCATTCCAAGTCACTGCCGCCCCGACCAAATCGGTTCCTTCCGCCCCACGCACCGACACCGCGCCCCGTGCACGGGGCAAGAAGGTCCCCCTCCCCAGTGCAGAACGCGATGCCTGGGGACGAAAGATGCTGGTGGCCTGCGGACTCGACGTCGAAAGCCTCACCGTCCACGCGGGACCGCGACTCGACAGCGCCATCAAATCCTTACCCCGAGCCCACAGGGCAACACCGAAGGCCGTGTTCGCACACACCACCGTGGTGTACACAGGTACAGCGCACATCATGGACGCAGAAGCCCACATCGCTGCGCTCACCCACGGCGTGGGATCCGCGAAGGCCTACGGGTGCGGACTCTTGCTCACCAGATCGGTATGACACGGCATTCGGGTACCGAACGAACCGCGAGCCCATCTCCTGCAACTCGCCTGGTCAGGAAGT
# Right flank :  ACCCGGTGCTCTCTGCTTCGCGATGTCGAGTCCTGGCCGCAGCCGGCTCCAGCCAGTTGGGGGACAGAACTTCTTTCGTCGATACGAGCGGCTCGGCTGTCGCCGTTCCGGGAACCGGGCACATCAGCGGCACAGCCGCTGCCAGAGGCGGTCTCGACAGCACTACGGCATCCCATGACCGGCAGCTGCTTCGTTCCTTGCGCCGGCCGCCCCTTCACCACGAACGGATCCGTCATGACACACAGCTCACGTACAACCGCGCCTTCTCTACGTCGCGACCTCGTCGCCATCAACCTCGCCTTGATCGTCGCGGCTCTCGTCTTCGGCGTCGGCCACATACCTGGCGTGGTGAACTCGGCGACCTTGATCGCCATCGGATCGAGCCTGTGGGCGGGCTTCAAATTCGTATCGGTCATGCGTCGACTGTTGAGCACCAACCCAGTCCCGGCCGACGTCGCGCGCCCCGATTTCGTCGACACGTCCACGCCGCCGCCAGTTCC

# Questionable array : NO	 Score: 5.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.48, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCCGCCCCGCACACGCGGGGATCAACC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [4,2] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCCTCCCCGCACACGCGGGGCTGTTCC with 96% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-9.00,-9.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [12-10] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0.78   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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