Array 1 10285-12144 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNMY01000033.1 Salmonella sp. SG193 contig00033, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10285 29 96.6 32 ............................T GGGACAAAGAGGTCAGCGACGAACCGGACGAC 10346 29 100.0 32 ............................. CCGTGATTCGACCTCTAAATGGGTTCTCATTC 10407 29 100.0 32 ............................. GACAGTTTTTCGAACTCAATCGGCTGCGCAGC 10468 29 100.0 32 ............................. GAAGGATTTTTTCATATAGATACCATTTAGAA 10529 29 100.0 32 ............................. GATGACCCGGAGGCGTACGAAGGATGCGCGGC 10590 29 100.0 32 ............................. TGATTGGGCGGGCGCGTGTTCGAATAAAAAAC 10651 29 100.0 32 ............................. GTTTACAGCCTGAGCAATGCTGGAATGAATGA 10712 29 100.0 32 ............................. TTTACAGGTCATTTTGCTGTCCTCATTTTTGG 10773 29 100.0 32 ............................. GGGGAATGTCCCGTGTGCGGCGCCCGTGGAAA 10834 29 100.0 32 ............................. CCCAGGCCCATACCACCAGATAACATAAACCC 10895 29 100.0 32 ............................. AACACACTGTTCGACACTACCTACAGCAGCCA 10956 29 100.0 32 ............................. TAACTGGTGAGGGTGAATTTGTTTGCATCCGT 11017 29 100.0 32 ............................. TGAAAAAATCAGGACGGCGGCAAAATCTAAGC 11078 29 100.0 32 ............................. ATACTGCTTGTCCTGGATTTGCTGATCAATTC 11139 29 100.0 32 ............................. TTCTCCCGGAACCACCAACAAAAGAGGCCAGG 11200 29 100.0 32 ............................. GCGGAGCGAGCCTGATTGAGCAGGCTGTGGGA 11261 29 100.0 32 ............................. TGGGCCGCATTGGTGTTTACGAGGACAGTGCG 11322 29 100.0 32 ............................. TGTATGTGCACTTTATGTATGGTGTATGTGCA 11383 29 100.0 32 ............................. CCGCCCGGGTATGATTTCATTTTTTGGTTATT 11444 29 100.0 32 ............................. CCGCCCGGGTATGATTTCATTTTTTGGTTATT 11505 29 100.0 32 ............................. GGTCGTCGAAACCACTTGTTATGACCGGCATT 11566 29 100.0 32 ............................. TCTATTTTTTGAGGCGGGATGGTAATGTATTG 11627 29 100.0 32 ............................. GATGCTGGGTATGGCAGGTATGATTTGTGAAA 11688 29 96.6 32 ............................T TATTAGTGAGCTGCGGGCTAAATATAGTGATC 11749 29 100.0 32 ............................. AAAATGCCGACATAACGAAAAAGCGAAAGAAA 11810 29 100.0 32 ............................. GTATTTACCACGCTGGCATCGGGTAAAAAGAT 11871 29 100.0 32 ............................. CGCCATCACGTTAGTAGCTGCGCCCCCCAAGA 11932 29 100.0 32 ............................. CCTGACGCCAAAGGGAACGTGAAAGTGTCTAC 11993 29 100.0 32 ............................. TTTAATCGCAGTTTTAAATGTTGCCTGCGCAT 12054 29 100.0 32 ............................. AGTGAGCAGGAGCGCAACGTTTATCAGCTTAT 12115 29 100.0 0 ............................. | A [12142] ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCATTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 234216-236686 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNMY01000005.1 Salmonella sp. SG193 contig00005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 234216 29 100.0 32 ............................. AGCTGGAAGGTTCTTTGTTGCTGGAGGCTCGC 234277 29 100.0 32 ............................. CATTTTAACAGTCATGAAATCGGCGCTGGTTA 234338 29 100.0 32 ............................. ACGCCACCGATCTGGCTGTACACGGTACGCAG 234399 29 100.0 32 ............................. GTTAAAAAACACACTAAAAACAGGCATGGCGC 234460 29 100.0 32 ............................. GATCAACCTCTTAAAATAATATTGCATTTAAT 234521 29 100.0 32 ............................. CCCCGGAAGTGGCCGGGGAAACAAGGCAAGTC 234582 29 100.0 32 ............................. CATCTGGCCTGTAGTTCGGGCCGTGTAAGATG 234643 29 100.0 32 ............................. GCGAGGAAAGAGGCTGGCCGCCAGCCAAACCT 234704 29 100.0 32 ............................. CCAGGCTGTCTATCGGTTTATCGTCATCAATG 234765 29 100.0 32 ............................. GACAGGCCGGGATCGGTGGGGTTATCGACGAG 234826 29 100.0 32 ............................. CCGCTGTCTTTGTCCAGTACGCGCACACTGCC 234887 29 100.0 32 ............................. CGGTTAAACGCTCTGCGGCTGCGTCGAATAAT 234948 29 100.0 32 ............................. CGCTCACAACGCAATGGGAGATGTCGGTGAAA 235009 29 100.0 33 ............................. CACACCCGCATAACTCAACGGCGAACCGAGAAC 235071 29 100.0 33 ............................. TTTTGCAGGGAAACTGGAAGACAAGATGCTGGC 235133 29 100.0 32 ............................. CCATCAACTGGCAGAGGGCGTGGAATTACCCG 235194 29 100.0 32 ............................. CCGGTGGGCGATCCATCACGGCTTTATACAGC 235255 29 96.6 32 A............................ GGCCACGTCGCGAGCAGCGTGGCTTTTGCCGC 235316 29 100.0 32 ............................. CCCAATATTTCGGAGTGGCCCAACGACGCCGC 235377 29 100.0 32 ............................. CTGCTGCTCTAGCTTCAGAGTACGGGAGTTGA 235438 29 100.0 32 ............................. ATTTAATTAAATTTCAAGAGCAATTTGTAGAC 235499 29 100.0 32 ............................. AATACCCTGTAGTTTCAATTTCTGCAGGTGGG 235560 29 100.0 32 ............................. CCGAGCAGCAGGCCATGATCGACGCCTACGCC 235621 29 100.0 32 ............................. TGCTTCATCTTGTTCACTCAACCAATCGTCGA 235682 29 100.0 32 ............................. GGAACACTAACAATCACTGACGTTGTTGCCGT 235743 29 100.0 32 ............................. TCTGTTGATTTTTCCACTGCAACCAGTCTTTC 235804 29 100.0 32 ............................. CGGGCGATCCGGTCGGACTGGCCGTGCGTGGT 235865 29 100.0 32 ............................. TCGACACCCTCGATGGATTTGATAGAGTCGAG 235926 29 100.0 32 ............................. GTGGTAATTACGACGCATCGTCACCACGTCAA 235987 29 100.0 32 ............................. ACGACGTATTGCGCCGCGCAAATGCCGAGGTT 236048 29 100.0 33 ............................. GAAATCCAGCCCGACGGCACGGGGTTGTCAGTT 236110 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 236171 29 100.0 32 ............................. ACACCAGCTACCGGCGACGCCTGCAGGCTGCA 236232 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 236293 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 236354 29 100.0 32 ............................. ACAGCCACTGAGGTAAACGTGCGGGTTGGTCT 236415 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 236476 29 100.0 32 ............................. TTCGTGTTGGCCTTATTCGGCAATTGCTGGGG 236537 29 100.0 32 ............................. AGGGTCTGGTTACTTCATTACACGCAGGAAAC 236598 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 236659 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //