Array 1 4292402-4291714 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRQN010000001.1 Enterobacter hormaechei strain UCI169 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4292401 28 100.0 32 ............................ ACGAACAGAGCGCCGAAGAGCATGGAGGTTAC 4292341 28 100.0 32 ............................ CATCCGCCAGACGCGACCCTGACCGCAGACTT 4292281 28 100.0 32 ............................ AGATCCACATCATCAGCTGTCGGCATTTAAGC 4292221 28 100.0 33 ............................ TTCACGTCCCTGAACATCGACAGAGCCTTTGAT 4292160 28 100.0 32 ............................ GCATTCTGGAAGCCGCCGAGCAGGGTAGCCTC 4292100 28 100.0 32 ............................ TTGATCGCTTCGAGCATCGGATAAGCCTGGTC 4292040 28 100.0 32 ............................ AGTGTGAAATGCTCAAAGAAGCACTTTTTCGG 4291980 28 96.4 32 ............G............... TGATGGAAAAGGTTATCTTTGACGGATTCAGC 4291920 28 92.9 32 ..T.........G............... AAACTCCACGCCCGCAGAGCGTGCGCTTGAAG 4291860 28 100.0 32 ............................ ATTGAACAGATGCGTAAAAGTAACCCTGTTCT 4291800 28 96.4 32 ...............A............ TCATCGAGTGTAAGGCTGTGTGATTTTATTGT 4291740 27 67.9 0 .C....CA.......AC..A.AC.-... | ========== ====== ====== ====== ============================ ================================= ================== 12 28 96.1 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACGCGCCACACGTTCGCTCTCGTCGGGCGTCAGCGTCCGGCCTGTACTTTTGCGGCGGGCAACGTTACGCTCGTTGATTCCCGTAACGCGTAAAATCTCCGCTTTCGACATGTCCGTCCACTCGTGAATATTGTCGAGGACGCTGACGGGTAATCCTTGATTGAGATATTCAATCAACCGCATGCCTCTACTTGCAGGTAAACCGGCGTAGCGCCACAGCGTGTTATCAGCCGGCCTTTGCGCAGGAACCCATGTTCTCATGATACCTCCTGGATGATGTCATTTGTCATGAGTAAGTATAGCCATTTGTCAGGGGGTATGGAACGGGTGTTTTTTGTTCAGGGTGGGGTAAAAGAAGGATGGGATTTGACCCTAATTTTTGACCAAAATGTAATGCATTGATTTTTAGATTAAATATCCTGGAGCGCAAAAAAAGGGTTTGAGCAGGGATTTTAGCTTTTTTTGTATGAAAATCATGATGGTGGAGAGATATTATTTCA # Right flank : CCCGAAACAAAACCCAACCAATCGTTCAAATAATCGACTGTACTAACAAAAAAATAAGGCCGGGAATATCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATATAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGTTCTACGCGAAACATGGTATTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCCTCAATTAAGTAAAGAATTGCGCGTTTAAAACGCAGCAAAACAGTCTCAGCGTATTGCCCAAGCGTCACGGTACAACCGAACGGAAAGCGCATTCGTAAAGGGGAGACGAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4303213-4301865 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRQN010000001.1 Enterobacter hormaechei strain UCI169 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4303212 28 100.0 32 ............................ ACTGGTCCCATAGCTTCATATTGTCCGGCCAG 4303152 28 100.0 32 ............................ AATGCGAGGTGGTTCTTGCCGGTTCCAGGCTT 4303092 28 100.0 32 ............................ AATGAGCACTACCCTAAAAGAATGGCTCCTAA 4303032 28 100.0 32 ............................ GTATTTGAGGAGTGTCGCCAGCGGTGGGGCGG 4302972 28 100.0 32 ............................ GTACATCCACATCAACAACAGTACCCACAGGA 4302912 28 100.0 32 ............................ TCGCACGGACGGTGATCCGTTGGGCATGAATC 4302852 28 100.0 32 ............................ CTGCTTTCTTCTACACCGCAGACGGGCAGGTC 4302792 28 100.0 32 ............................ TGACGAAAGAACAGAATGACTGGCTTAATGGC 4302732 28 100.0 32 ............................ TGCTTACCGCTTTTTAACCAGACATCTACCTG 4302672 28 100.0 32 ............................ ATAAACGAGGGTCTGCGCTTAGCGTTCGTTGA 4302612 28 100.0 32 ............................ TTTGTGCGGTCATGATCCTTTGTCAGTTAATC 4302552 28 100.0 32 ............................ ACATCCAGCAACGCCGCCATATCAAGCCAATC 4302492 28 100.0 32 ............................ TGCCGTTTTAGGCAAGAATAAAAATGACTGTC 4302432 28 100.0 32 ............................ GTTATGAAGTTCAACGCCAGTTGGAAATGACA 4302372 28 100.0 32 ............................ ACGCAGGGCCAGGCGGTAAAAGGTTATGTAAC 4302312 28 100.0 32 ............................ ATCGGTATTGATGTTTAACTCTTTCGCTTTCT 4302252 28 100.0 32 ............................ TGACTGTCGGTGTACGAGTTGGCATCGATAAG 4302192 28 100.0 32 ............................ CTTACGCAGAACCGCATTACCAGCGACAGCGC 4302132 28 100.0 32 ............................ ACTGGTCATGTCAGTTAACATCGCGTTCCAGT 4302072 28 96.4 32 .................T.......... TTTAATCTGCGAGCGCAGAGCTGAAGCTTTAT 4302012 28 92.9 32 ........T...A............... GGAATATCCGGCATCAATCTGATTCTGAATCC 4301952 28 96.4 32 ............A............... ATTTGTCTTGCTGGATGTTAGTTACTGAGCAC 4301892 28 71.4 0 ......C.....A.....T..A..CTCC | ========== ====== ====== ====== ============================ ================================ ================== 23 28 98.1 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : TTCCGCAAACGCAGCCCGTTTGCCGTTGTCTCGGTGCTTATCTGGACGTAGTCAAAACCGAACTCGCAGAATCAATGAGTGATTTCCGGGTGGTTGAATTTGACGACGAGACGGAACGGCTGAAGGAAAAAGAGTGGCTTCTGGAGGATACCGAAACCAAATGCGATTACTGCCGGGCATTGAACCACGTGCTGCTGGTGTCGCATTTTGACCGCGAGATGCTGCCCCACCTGACAGGATTGCTGCATGACATTACACATTCGATGGCGGCAGATGTGGCTGCACCTGAATGTGGAAAGCCTGTAGTTCATATCATTAATTAAGTTTAGTCTCGTGCGTCGGGGAAGGGACTCCGGCGGGGTATGGCGAAACCCTTTTTTCGAGTAGTTCTTTAAGTTATTGATTTTTATTGTGCGAATAAAGGCCGCAGAAAAAAGGGTTTGAGGTAGATATGTTGATTATTTTCTTTTCGAACAATAAGATGGCGAAGATTTCTTCCA # Right flank : CCAAACATTCACTCCAATTATTTTAAAACCCACAACCCTCTTTGTATTTTAAATAAACTCAATACTCATTCACCCCACAACCATATTTCCTCATATATATCATTCACAAAAATAATACATTAAATATGTCAGAGATTTTTTATCTCGACATCCCGATAATTATTATTCATTTGATACGCGTCACATTTGTCTTCATCTTATCTCCGCTAACATACCCCGCATTCAACATATTGAAATAAAAAGCACTTGCTATGCCAGCGAACAGCATTACCCCATCCGACTTAAAAACCATTCTTCATTCAAAACGTGCCAATATCTATTACCTGGAGAAATGCCATATTCAGGTAAATGGTGGATGCGTTGAATATGTTACTCAGGAAGGTAAAGAGTCATTTTACTGGAATATTCCCATCGCTAATACGACGGCAGTAATGTTGGGAATGGGAACATCCGTGACTCAAATGGCAATGCGGGAGTTCGCGCGAGCGGGCGTGATGGTC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //