Array 1 115989-114762 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDUQ010000018.1 Streptococcus thermophilus strain Scam27 Contig_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 115988 36 100.0 30 .................................... TAACCACGTTGACTTTGTAACAGCGGTTCA 115922 36 100.0 30 .................................... TACATTAATCTAAAACCTTCAATTGGGAAA 115856 36 100.0 30 .................................... TGACCCAGATATTAATGTAATTCGCTATGT 115790 36 100.0 30 .................................... CAAACCATAACACTGACGACAATTCCAAGA 115724 36 100.0 30 .................................... GGCACTATCTGCATAAGCAAAATGGACATA 115658 36 100.0 30 .................................... CCGTGGTGAGCAAGGCTTGCAAGGACCGAA 115592 36 100.0 30 .................................... TTTAGCAACAGAAAGCCCACCGAGCGAACA 115526 36 100.0 30 .................................... ACCAGTCCACAATATATTAATTGAATTTGA 115460 36 100.0 30 .................................... ACACTCTCAAACTTTGACAATCATGAGTGC 115394 36 100.0 30 .................................... TAGAATCAGAATCACTTAGACCGTAAGTAA 115328 36 100.0 30 .................................... TACGGCTATTGGTTTTGTTTATCCATATGT 115262 36 100.0 29 .................................... AAAATGGAATTCCTGTTGATATGGTTAAC 115197 36 100.0 30 .................................... TGGTAGCAAGACTGGAATTTAAACTGTAGG 115131 36 100.0 32 .................................... CTTAAGAGTTACCCTCTTAATGGTCTTAAGTA 115063 36 100.0 31 .................................... CTTAGCCTTGAAATGGCACGTAGTGAACTTA 114996 36 100.0 31 .................................... CGGACAGCGATAAATACACTCTATACAGAGA 114929 36 100.0 30 .................................... CGATGGAAATGATGGCTTGCCAGGTAAGGA 114863 36 100.0 30 .................................... TATGAATTGTCAAATTAACGGTTGCGCTAA 114797 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 19 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAATCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 68373-69663 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDUQ010000009.1 Streptococcus thermophilus strain Scam27 Contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 68373 36 100.0 30 .................................... CTTCACGGATGATTGGGAAGAGCGTAAGTT 68439 36 100.0 30 .................................... GCTCTTTCTGTTATCAGTGTTCGTTTTATG 68505 36 100.0 30 .................................... GTGTCACGTGGTCACCTATCTTTGCGTCTG 68571 36 100.0 30 .................................... TAAATGGCACTTGACTTTCAACTCTGGTGA 68637 36 100.0 30 .................................... AAACACTTGCCTCCACCACAAAGTCTCATT 68703 36 100.0 31 .................................... CAATCAGCAAATAACACTGACAACTATCCCA 68770 36 100.0 30 .................................... TTTGGTATCTATCTCGTCTCTTAAGTCATT 68836 36 100.0 30 .................................... TACTCTACTTTAGTCCAGCTCTAAGATTTG 68902 36 100.0 30 .................................... GTGGTCTTCTATTCGTAAGATAGCACTAGA 68968 36 100.0 30 .................................... ATTAGATGCTATTATCACCGATGTCAAAAT 69034 36 100.0 30 .................................... CAAAAACGCTTTGGGTGACTACCTAATGGA 69100 36 100.0 31 .................................... ATTTTTGACATTGACTGTTAAGAATGTTGAG 69167 36 100.0 30 .................................... AAGTCAACGTGTCTGTTAGAGCCACTCTAT 69233 36 100.0 31 .................................... CAGACATGACCCAAGACAAATATGCTGAGTT 69300 36 100.0 30 .................................... TCCCATCGATGGTGAAGAGTTGAGCGATTT 69366 36 100.0 29 .................................... CAAAGCTAATGACACGGCTAGGGCACAGG 69431 36 100.0 30 .................................... ATAATAAAATGAGCGGTAAAACATTAACAG 69497 36 100.0 29 .................................... TGGCGCAATGGTTTTAAATCATATGCCTT 69562 36 100.0 30 .................................... GGCTTAACTCGGTTACGAATGTATCATTGT 69628 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 20 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGAAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTCGGTCTGCGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACCTGGCTAGCTCCTTGGTCATCTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //