Array 1 1273-467 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIYL01000050.1 Pseudomonas aeruginosa strain LMG 1272 contig050, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1272 28 100.0 32 ............................ TGACTTGGGCGGCCCACGAGGCATGGTTGAAT 1212 28 100.0 32 ............................ AACATCGACGGGTCGAACTGCTCCGGCACCTG 1152 28 100.0 32 ............................ TGGAATGACCGGGCCGTCGCTGAACAGTACTC 1092 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATTAGT 1032 28 100.0 32 ............................ TCCTAGTTCTTCGCCCAGCCGGAAACCGAGGC 972 28 100.0 32 ............................ TGGACGGCCGCAAGACAGTCACGCGGCGAGTG 912 28 100.0 32 ............................ TTGTCCGTGCGCGGCGCCTTGGGCAGAGTGAA 852 28 100.0 32 ............................ AAGACGAGTACCTGAAAGACACCACCGGCAAC 792 28 100.0 32 ............................ ACGATGGCCGGGTGATCGGTATCCCTGATCAC 732 28 100.0 32 ............................ ATCGCCGAGCTGGTGGAGCACTTCCAGAGCCC 672 28 100.0 32 ............................ TGGCCGTCCCAGGCCTCTTGCGGTCTAGCCTC 612 28 100.0 32 ............................ GACCCCCGGAGGACCAACCGTGGACAACGACA 552 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 493 27 92.9 0 .....................A..-... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 99.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ATGTCGCGAAGTTCATAAGCGGGCTTTGTAGTGGTCAACCCATCCCGGACAGTGGGTTGAGTTTTTCTTCGGCCACCGCAGGTGGTAACCCGTCGTTGAATTGATGCGGCCTGATCCAGTTGTAGCGGTGCATCAAGTAATGACTGATGTCCCGTTGGGCCTCCTGCGCCGTCAGGTAACCCGTTGACGGGACCCACTCCGACTTCAGACTGCGGAACAGGCGCTCCATCGGCGAGTTATCCCAGCAATTCCCTCGGCGACTCATGCTCTGCTGCATCCGATAGCGCCAGAGCCGTTGCCGAAACAGGCGGCTGGCGTACTGGCTGCCCTGGTCTGAATGGAACAGCACCTGCTGTGGCTTGCCGCGCTGTTCGTAGGCCATGTCCAGGGCCTTGATCACCAGTTCGGCATCCGGCTTGGCCGAGAACGCCCAGCCGATCACCCGCCGGGTATGCAGATCCAGCACC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 51853-51105 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIYL01000051.1 Pseudomonas aeruginosa strain LMG 1272 contig051, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 51852 28 100.0 32 ............................ GCAATCGATCAGGCTATGACCGCCGAAGCCTA 51792 28 100.0 32 ............................ TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 51732 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 51672 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 51612 28 100.0 32 ............................ ATTCCGGCAGAGGTTCGCGAAGCGGACATTGA 51552 28 100.0 32 ............................ TGTACCAACTGAGGTGCTACCTCAACCATGGC 51492 28 100.0 32 ............................ AGGCCGATGGAGTAGCCGGACAGCACTGAGCC 51432 28 100.0 32 ............................ GTCGGCCTGGAGTTTCGTCGGGCGTACATCAG 51372 28 96.4 32 .................T.......... CAAGCGGACGGTGACACGGACTATCAGACCGG 51312 28 100.0 32 ............................ TCCGGCACGCTGTGCTGAGCCTGAGCTACAGG 51252 28 100.0 32 ............................ ATCTCAGCGCCGCCTGTTCTGCCGGCCGCATC 51192 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 51132 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 99.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TGGATCTGCATACAAGACGAATAATTGGCTGGGCATTCTCCGCCAAGCCGGATGCAGAGTTGGTCATCAAGGCGCTGGATATGGCCTACGAGCAACGAGGAAAACCACAGCAGGTGCTGTTTCATTCCGATCAGGGCAGCCAATATGCCAGTCGCCTGTTTCGGCAACGGTTGTGGCGATATCGGATGGAACAGAGCATGAGCCGCCGGGGAAATTGCTGGGATAACTCGCCGATGGAGCGGTTGTTCCGGAGCCTGAAGTCGGAGTGGGTTCCGCCGACCGGTTACCTAACCGCCCAGGAGGCACAACGGGACATCAGCCACTACCTGATGCATCGCTACAACTGGATCAGGCCGCATCAATTCAACGACGGGCTACCGCCCGCCGTTGCTGAAGAAAACCTTAACCCACTGTCCGGGATGGCTTGACCACTACAGGTAGAGACGTCGGTGAGCGCTGCGATCTG # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 992-666 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIYL01000052.1 Pseudomonas aeruginosa strain LMG 1272 contig052, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 991 28 100.0 32 ............................ ACGATGGCCGGGTGATCGGTATCCCTGATCAC 931 28 100.0 32 ............................ ATCGCCGAGCTGGTGGAGCACTTCCAGAGCCC 871 28 100.0 32 ............................ TGGCCGTCCCAGGCCTCTTGCGGTCTAGCCTC 811 28 100.0 32 ............................ GACCCCCGGAGGACCAACCGTGGACAACGACA 751 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 692 27 92.9 0 .....................A..-... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : AAGACACCACCGGCAA # Right flank : TGTCGCGAAGTTCATAAGCGGGCTTTGTAGTGGTCAACCCATCCCGGACAGTGGGTTGAGTTTTTCTTCGGCCACCGCAGGTGGTAACCCGTCGTTGAATTGATGCGGCCTGATCCAGTTGTAGCGGTGCATCAAGTAATGACTGATGTCCCGTTGGGCCTCCTGCGCCGTCAGGTAACCCGTTGACGGGACCCACTCCGACTTCAGACTGCGGAACAGGCGCTCCATCGGCGAGTTATCCCAGCAATTCCCTCGGCGACTCATGCTCTGCTGCATCCGATAGCGCCAGAGCCGTTGCCGAAACAGGCGGCTGGCGTACTGGCTGCCCTGGTCTGAATGGAACAGCACCTGCTGTGGCTTGCCGCGCTGTTCGTAGGCCATGTCCAGGGCCTTGATCACCAGTTCGGCATCCGGCTTGGCCGAGAACGCCCAGCCGATCACCCGCCGGGTATGCAGATCCAGCACCGCGGCCAGGTAGTGCCAACGGCCTTGCGCCCAGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //