Array 1 135326-136744 **** Predicted by CRISPRDetect 2.4 *** >NZ_FBHY01000024.1 Campylobacter coli isolate SWAN408, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 135326 36 100.0 30 .................................... CTTGCAGGGTGAAGACTATCAGGCTCTAAG 135392 36 100.0 30 .................................... CTAATATTTTATACATTTGTGTTCCGCCTC 135458 36 100.0 30 .................................... TTTGTATTGAGAAAAGTATAATTTTTACTT 135524 36 100.0 30 .................................... AACTGAAAGTTGATTTGCTGAGCTATCAAT 135590 36 100.0 30 .................................... ATTTCACTGCATTTCGGGCATTTTGAGTAA 135656 36 100.0 30 .................................... TAACGCCATCGGCTTGCTGTGTTTCATCTC 135722 36 100.0 30 .................................... TATCCCCGCTCTAAGACGGGGCAACTTATC 135788 36 100.0 30 .................................... CAGTTAGTCCTACTGATAGAGCTTAAAACT 135854 36 100.0 29 .................................... AGCAAGCAGAAAAGACACCAGTAATAACT 135919 36 100.0 29 .................................... ATTAAAACACTGCTTGACAACCCTTACAA 135984 36 100.0 29 .................................... TTAAGCAAAACACTATGCAATTTATTAAT 136049 36 100.0 30 .................................... AGAAAACAAAACTACCCTATGAATGAAATT 136115 36 100.0 30 .................................... TTTATTTCCTTAAGTATGAGTTTTTTAAAG 136181 36 100.0 30 .................................... CCTATCGTGAATACACAAATAGCACCATTT 136247 36 100.0 30 .................................... TAAAAAGTCGTTAATATCTTCTGGATTTAA 136313 36 100.0 30 .................................... TACAATTGGGCTGAGGAAATGTATCTCGCC 136379 36 100.0 30 .................................... TCCAGCAACTATTGCTTGTGATCTTTCAAT 136445 36 100.0 30 .................................... AAAATTCAAACCGCCATGACTATCCTTAGC 136511 36 100.0 30 .................................... AAAGAGCTTGTTAAAAACGATATCTATAAT 136577 36 100.0 30 .................................... CAATTGTAAATCGTTAATTTTTGAGGTATT 136643 36 100.0 30 .................................... TTTGATATGCTACATACCCCAATAGTAGTT 136709 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 100.0 30 GTTTTAGTCTCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : AAGACCATTACAAGCTTCTTTTATATCTAATTCACAAGCTTTTTCATAGTATTGTTTAGCTTTAGAATAATTACCTTGTTTATGTTGTTCTTTTCCAAGATCAAAATAATTATCATTTGAATAAACGCAAACAGGTATTAAAGTAAATACAAATATGAAATATTTCATTACCATCAATTTTCCTTTTAAAGCTATATTATTTGAAATTTTTATATTCTTTACAATCATATTCATCTCCTAATTCACAAGATTTTTCATAATTAATTCTTGCTGTATGGCAATCTCTTTCGATGTACTTACACTTCTTTAATAAAATAACCATCGTTCGAAAATACATTTGTTGTTAATAAAATTAAGAACTAATATATTTAATTTTATTTGTTGCCTTTTATAATTAATTGTTAATTATAGCATAAATTATAATTTACAATTGATAATATGTTATGTAAAAATTAAAGTTTGAAAAAATTTATTTTTTCAAATTCCAAAAGCGACATATT # Right flank : TAGACTTTGAACAAATAAAGAAAAATAGAGCTTTTTGTATACAAAAATGTATAAAAATATGCTATCATTTTAAAAGAGAAATTTAAAAAGAGACTAAAATAAGTGGTTTTCGGTTAGCCACGCAGGGTTACAATCCCTTTAAAACCGTTAAAATTCAAACAAACTAGCTTGTCTAATTTTATTAGACTTAGTTTTGTTTTCTTTGTATATCTTGTCATTGCTGTATTTAAAATCTTGTGTTTTTTCATCATACTCAAAAAGAACTAAATTTTTATCATCATTCATTTTTTCATTAAAAGAAACTCCGCCTAAAAGTATTTGCATATTGTCAAATTGTTTTTCAGTTATGGTTAATACTCTTATATTGCCACAAGGGGGTAAAATTCTTTCTACGGATTTGATTGCTGTTTTAGCCGAAGTCATTCCTTTACAAATTTTAACATATACGCTAAATTGCATCATAAAAAAGCCAAGTTTTACAAGCGAAACTCTAAATTTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCTCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [81.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //