Array 1 1621-529 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCBC010000015.1 Streptococcus gallolyticus strain LMG17956, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1620 36 100.0 30 .................................... TTATGATACACATATGATTCAATATGATTT 1554 36 100.0 30 .................................... ATTAAGTTTATCCTTTAACGCTTCTAAAAT 1488 36 100.0 30 .................................... TATTCGTACGTCCGGTAATTGGAAGGATGT 1422 36 100.0 30 .................................... ACTGTTGATATCATAAATCACACATTCGTT 1356 36 100.0 30 .................................... TTATTTGACTTATTTAAATAGGAGAAAACA 1290 36 100.0 30 .................................... CGTTGCGTGCTTTCAAGTAAATGTTTCCAT 1224 36 100.0 30 .................................... CTAGGTGCCGTCGTGTCAGATGATAGTGGT 1158 36 100.0 30 .................................... AACCTTACCATTTTTTAATTTTCTTATCAC 1092 36 100.0 30 .................................... TTTGCCCTTTCATATCATATAATAAAGGCA 1026 36 100.0 30 .................................... AGTATCGTCAGTCGTGTTGATTTTTGACTG 960 36 100.0 30 .................................... TCATACTATGTCATTAGAATTTCAAACAGT 894 36 100.0 30 .................................... TGCAACATTTACAGCAATTGCAGACCAAGA 828 36 100.0 30 .................................... AAGCGCAGGTGTTTCAATGTGGCGGCTTAA 762 36 100.0 30 .................................... TGTTTGAAGATTGTTGTAAATGTTTAGGGC 696 36 100.0 30 .................................... ACGTATTCACTTTGACTATTTCAAACGTTT 630 36 100.0 30 .................................... TGACATAGTTGCCAGTGAATTGTACCCAAT 564 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATGGAAAAAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGGCTTGTTGGTGAGGTGCTTCACCGTATTGAACGACGTGGTTTTACAATTGAAAAATTGGAAATGCGTATGGCAACTCCAGAATTATTAGAAAAACATTATGTTGATTTGGTTGACCGCCCATTTTTCCCACTAATCGTTGATTTTATGACAAGTGGTCCAGTAATTACTGGTGTTATGTCTGGAAATGAAGTCATCACTTCATGGCGTACGATGATGGGAGCGACAAATCCTAAAGAAGCTCTTCCAGGAACAATCCGCGGAGATTATGCTCAAGCACCAGACGAAGGTGGCGCAACATTTAATATTGTTCATGGGTCAGATTCACCAGAATCAGTTGAACGCGAAATCGCCCTCTGGTTTGGGGAATAAATAAAAGGAACTATTTCGAAGCTGAAGTCTAGCTGAGACAAATGGCGCGATTACGAAATTTCGTGAGAAAAATGGTCCACGAG # Right flank : AAACGTTGTCGCGCCTTGACCGTAGTGTTTGTTTTAGAGCTGTGRTGTTTCGAATGGTTCCAAAACAAACAATGTAAGTGTTAAGGCTTATATCCAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTTCCGTTTGCGTAATCTATATAAAAGTTCTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTATGCCTATTTATTCATTTGATACAGTTTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACATGACTTGTTCTTTCTGTGCATCATGTTTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACGCTTGTAAATAAATGTTTGCATTAGCTTTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACGTCCGTGTTTATGATAGTGACAACGGCTATGTTTTAGAGCTGTGTTGTTTCGAATAGTTCCAAAACATTCAGCTAGTCAACAATATATGTTTAATAGTTTTAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 36-1061 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCBC010000161.1 Streptococcus gallolyticus strain LMG17956, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 36 36 100.0 30 .................................... CTTCTACACCTCCCGTCACCTCCTTTAAAA 102 36 100.0 31 .................................... AATATCACCTGAACATAGATAGAGATTGATA 169 36 100.0 30 .................................... AGTGACCCTCAAGACTAAATGGATAGTGGG 235 36 100.0 30 .................................... TAAACCTTTCATAAGGCTGTCTTTCAAGTC 301 36 100.0 29 .................................... CTCCAGCTGATTCACATCAAAAAACAATG 366 36 100.0 30 .................................... TAGAGTGACGGAACTTTTCGCTAAAATAGG 432 36 100.0 30 .................................... TTTTGCTACAGATTCGTTTACGCAGTCATT 498 36 100.0 30 .................................... TAGCGAGACTGTTTTTTGTTTAAGCGTTTT 564 36 100.0 30 .................................... TTAATGAAAAAACAAAAATACTTAATTACA 630 36 100.0 30 .................................... AGGTTTTGATTATTTTCGTAATTACTATAA 696 36 100.0 30 .................................... AAACGTTGTCGCGCCTTGACCGTAGTGTTT 762 36 100.0 30 .................................... TTGATTTTGTGTGTTTTGGGTGTTCTCATT 828 36 100.0 30 .................................... TTCTTTTTGGAATAACTGTAGCTTTTGATG 894 36 100.0 30 .................................... ATGAAGCTAGTGAGGCAAGTGGCGGTGCTG 960 36 100.0 30 .................................... TGAAAATACACTATATAATATACTCATGAA 1026 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 16 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : CAAAACTCTATCATCCTTGCAGTTGATAAAGAAAGG # Right flank : AAGCGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 21-320 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCBC010000154.1 Streptococcus gallolyticus strain LMG17956, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 21 36 94.4 30 ..............C..........G.......... GCTTGTAAATAAATGTTTGCATTAGCTTTT 87 36 94.4 30 ..............C..........G.......... GTCCGTGTTTATGATAGTGACAACGGCTAT 153 36 100.0 30 .................................... ATTCAGCTAGTCAACAATATATGTTTAATA 219 36 100.0 30 .................................... CGTAAAAAATAAGGAAATAACATACCATGA 285 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 97.8 30 GTTTTAGAGCTGTGTTGTTTCGAATAGTTCCAAAAC # Left flank : CGTCGTCTTCGTTATGTTTTG # Right flank : CTGGTATTTAGGATTTAGCAGGAATAGAATGCCATGAAACTTACTAAAGTTTTAGTGAAAACGCCTTTCAATATTTTTCAAAAGTTTTCTTTTATGGTAAAATAAAAACTGAATTTATTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGGCTTGTTGGTGAGGTGCTTCACCGTATTGAACGACGTGGTTTTACAATTGAAAAATTGGAAATGCGTATGGCAACTCCAGAATTATTAGAAAAACATTATGTTGATTTGGTTGACCGCCCATTTTTCCCACTAATCGTTG # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATAGTTCCAAAAC # Alternate repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 648-18 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCBC010000164.1 Streptococcus gallolyticus strain LMG17956, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 647 36 100.0 30 .................................... CCTTTCCACTTGCTCCACCTATACTTAGTC 581 36 100.0 30 .................................... CTAACGAGTAAGTATATGAATGGTATTTTG 515 36 100.0 30 .................................... TATCAGACGTTAACAAAACAAATGCCGGTA 449 36 100.0 30 .................................... TAAAGTGTGAATAGTTGTTTGAATATCTTT 383 36 100.0 30 .................................... ACATGGCTAAAAAATTCGTACGTGGTATCA 317 36 100.0 30 .................................... ATCAGACTTTGAAAATATGATGTATGTTGA 251 36 100.0 30 .................................... TCTGTAATACTGAGGTAGTTGTCTATGGTT 185 36 100.0 30 .................................... AAATCTTTGAGGGGGATATTGTAAAAGTTT 119 36 100.0 30 .................................... TATTAAAGGCGACATTGTTTCTAATGATGT 53 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TCCAAACACGTATTCACTTTGACTATTTCAAACMTTTGTTTTAGAGCTGTGRTGTTTCGAATGGTTCCAAAACTTTACCAAAGTCGATACCGTGCCGTTTAT # Right flank : CAAATACTAGTCAACGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1076-115 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCBC010000166.1 Streptococcus gallolyticus strain LMG17956, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1075 36 100.0 30 .................................... TATTAAAGGCGACATTGTTTCTAATGATGT 1009 36 100.0 30 .................................... AAAATACTTGTCTTTTTATCAATGTTAGAT 943 36 100.0 30 .................................... TTCACAAGGTGGATTAAATGAAATTGTACT 877 36 100.0 30 .................................... TAAAGCAGGTGTTAACCTACTACAAACGTT 811 36 100.0 30 .................................... AGTTGATACACCGCCAGCGTGTACCGTAAG 745 36 100.0 30 .................................... TTGACAAATGTATCGAAATGTGTGACAGTG 679 36 100.0 30 .................................... ATCAATCTCTTGTGGTGTCAGGTGATGCAA 613 36 100.0 30 .................................... TGCGCCTTTAATAACAATTTTGTTATAAAA 547 36 100.0 30 .................................... AGTGGAAAGGTTAATCGTGCTTTAGATAGT 481 36 100.0 30 .................................... ATGTTGAATTGCTATTAATTAAGTTATTTA 415 36 100.0 30 .................................... AAAAAGCTTATAATTTTCATGTTGATTATG 349 36 100.0 31 .................................... TTCCGCATTTTTAGTATAAGTCCATTTCAAT 282 36 100.0 30 .................................... CAACGCTAACTTACGTAAGACAGATGATTA 216 36 100.0 30 .................................... TGAATAGTGTAGCGCATATTTTTCCCTGTA 150 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 15 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : GGGGGATATTGTAAAAGTT # Right flank : CAGGGTTTTTCTCGTCCTGCTAACTTATTAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAACACKTTVTDCACCTCCCGTCACCTCCTTTAAAAGTTTTAGAGCTGTGTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1630-8 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCBC010000229.1 Streptococcus gallolyticus strain LMG17956, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1629 36 100.0 30 .................................... TAGTGGGTGGGGTGGGGAATCAACACCATC 1563 36 100.0 30 .................................... TGCATCAGGTTTTTGTGTTGGTGCTCCTTG 1497 36 100.0 30 .................................... GCATGCATCACGTAGCGTTGAATGTCGTTA 1431 36 100.0 30 .................................... TAGTGAGACTGTCTTTTGTTTTAATGTTTT 1365 36 100.0 30 .................................... ATTTATATAAACACCTACTAATCGAAAACA 1299 36 100.0 30 .................................... AGTATTATAGTCCCGTCTGTCATCATACCA 1233 36 100.0 30 .................................... TGTTTGTAGATTGTTGTAAATGTTTAAAGC 1167 36 100.0 31 .................................... CTTCCGTTATGTTTTGTAGATTAACAACACC 1100 36 100.0 30 .................................... AGTGTAGCTGTTTTCAAAACTGAATATTTT 1034 36 100.0 30 .................................... CTGACAAAAAGCATAAATCTACTACGATAA 968 36 100.0 29 .................................... AAGACGGGCAACTTCCACAGCTATCGCAG 903 36 100.0 30 .................................... TTCCAGACCCAAACGATTCAGACGTTACTG 837 36 100.0 30 .................................... TTGCAACTTATTTTATAAGCACGAAAGTTG 771 36 100.0 30 .................................... TTCGGCATTTTTAGACAAGTCCATCTCAAT 705 36 100.0 30 .................................... TATCTAAATCGTTAAATAAACTATCGTGAT 639 36 100.0 30 .................................... TCATTTTTAAAATCACACCACCCTGTTGTT 573 36 100.0 30 .................................... TTTGAGTAGTGGATTAGTGCGTGTGTTTTT 507 36 100.0 30 .................................... TCGTTTGAAACAGACTGTCTCATGACTGCT 441 36 100.0 30 .................................... AGGCATATAATTAGGGGCGAATAGCCCACT 375 36 100.0 31 .................................... AAAACTACTAGTAACAATATTTATTATAGCT 308 36 97.2 31 ..............C..................... CTAAGGAAATTTTAGGATAACATAAAAAGAC 241 36 97.2 30 ..............C..................... TATCAAATAAGCAATATTTTTTATGGTTAA 175 36 97.2 30 ..............C..................... GCTGGAAGGAGTGGACTGTCAAAATTAACG 109 36 97.2 30 ..............C..................... TGAATACAACTTTTCAGATGAACAAGTCGC 43 36 97.2 0 ..............C..................... | ========== ====== ====== ====== ==================================== =============================== ================== 25 36 99.4 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : CCCTCTGGTTTGGGGAATAAATAAAAGGAACTATTTCGAAGCTGAAGTCTAGCTGAGACAAATGGCGCGATTACGAAATTTCGTGAGAAAAATGGTCCACGA # Right flank : CTTATCTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 552-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCBC010000246.1 Streptococcus gallolyticus strain LMG17956, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 551 36 100.0 30 .................................... TTATCTAGTGATAAATCGGTATTGTCTTGC 485 36 100.0 30 .................................... TGTATAGTGTGTATGTTAGTCTGTATTTTT 419 36 100.0 30 .................................... TTGACTAGCCGATAAATTATTTAGTAGGGT 353 36 100.0 30 .................................... TCGTCGTAGTCAACGACTTTGTGGGAAAAT 287 36 100.0 30 .................................... CCCTTTCTGGTGCTCGTAGAGCACATCAGC 221 36 100.0 30 .................................... TACGTGTGCTTTCTAACACTTGCTCTTTTT 155 36 100.0 30 .................................... TTTACCAAAGTCGATACCGTGCCGTTTATC 89 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CTGTGCTGTTTCGAATGGTTCCAAAACTGAATACAACTTTTCAGATGAACAAGTCG # Right flank : CTTCCMTTTGCGTAATCTATATAAAAGTTCTGTTTTAGAGCTGTGCTGTTTCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 89-389 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCBC010000256.1 Streptococcus gallolyticus strain LMG17956, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 89 36 97.2 30 ..............C..................... TTCCGCATTTTTAGATAAGTCCATTTCAAT 155 36 97.2 31 ..............C..................... ATCTATCATCCCTTGCAGTTGATAAAGAAAG 222 36 100.0 30 .................................... CTTCTACACCTCCCGTCACCTCCTTTAAAA 288 36 100.0 30 .................................... AATATCACCTGAACATAGATAGAGATTGAT 354 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 5 36 98.9 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : GTGAGAAAAATGGTCCAYKWRGTTTTAGAGTCTGTGCTGTTTCGAATGGTTCCAAAACAAAAAGCTTATAATTTTCATGTTGATTATGG # Right flank : AGTGASCMTTTTTAGATAAGTCCATTTCAATGTTTTAG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 111-938 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCBC010000084.1 Streptococcus gallolyticus strain LMG17956, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 111 36 100.0 30 .................................... TGAACTTGTTGAGGAGATTCTCCAAACAAT 177 36 100.0 30 .................................... AACAGTTATGAACAAGTATTATGATGGCAA 243 36 100.0 30 .................................... CTCCAGATCGTTGTAATAGACGATAACGAA 309 36 100.0 30 .................................... TATTTAACGTCGTCTTCCGTTATGTTTTGT 375 36 100.0 30 .................................... AGTGGAAAGGTTAATCGTGCTTTAGATAGT 441 36 100.0 30 .................................... TTGCCATGAACCGAATAAGGTTTCAACTGT 507 36 100.0 30 .................................... CACACGAATGATCAATATATACCCTCATAT 573 36 100.0 30 .................................... TCGGGCAAATTGCCCACAAGCAAACGCCTA 639 36 100.0 30 .................................... CTAAACAAGATAAAACAATTTCAATTGAAG 705 36 100.0 30 .................................... AAGATAATCTAGCTCAAAATATTATGATTT 771 36 100.0 30 .................................... ATGTTGAATTGCTATTAATTAAGTTATTTA 837 36 100.0 30 .................................... AAAAAGCTTATAATTTTCATGTTGATTATG 903 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 31 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TCAAGGTTTTTGAGGTATAATATAGTTAAAATAACGAATCATTCGAGGCTGAAGTCTAGCTGAGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATGGTCCACGAGG # Right flank : TTCCGCATTTTTAGATAAGTCCATTTCAATGTTTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //