Array 1 38192-38964 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIIG010000015.1 Bifidobacterium sp. DSM 109959 Contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 38192 33 100.0 34 ................................. ATCGACCCGCAAGCCGGCAAGGCCACGGTCGGCA 38259 33 100.0 36 ................................. ATTACGAATAAGACAGGTAGAGTGCTGGTTTTGATG 38328 33 100.0 33 ................................. TTCGCCGAACCGCTCGCCAAGACCGGCGCGGCC 38394 33 100.0 33 ................................. TCCCTGTCGGAGGTGTGGACGCAGGACTCGACG 38460 33 100.0 34 ................................. AACAAAGTCGCCGGCGTGGTCGCCTCCAGCCTCA 38527 33 100.0 34 ................................. TGGGGCAACGACCCCACGCATCCGGTCACCCACG 38594 33 100.0 35 ................................. GGCGGCAAGCGCGCCGCCGCGCCCGTGGTCTGGCG 38662 33 100.0 34 ................................. TTCTGGAAGACCGTCACCCAGTAGTAGCCGCCCG 38729 33 87.9 34 .........T..AT........A.......... TCAGGCGTGTAAGAGCAGGGCGCAGCGGCAACGT 38796 33 84.8 35 .....T...T..AT........A.......... AAATCCAGTTTCTCGCCAATCGTTTCCATGCCGGA 38864 33 90.9 35 ............A....A....A.......... AACCAGAACGGCGTGAAATGCCGCGACCGCTTGCA 38932 33 87.9 0 .....T......A.........A.........A | ========== ====== ====== ====== ================================= ==================================== ================== 12 33 96.0 34 GTCACCCTCCTCGCGGAGGGTGCGGATTGAAAT # Left flank : AATGTTCGGTTTCGCCGTCAGACTATTTGCAGCTTCGTCATGAGCTGGATGACATTATCGATATGGAAAGCGATAGTCTTCGTTTTTACAATCTAGGTGCGAAGTATGCGGATCGTATTGAAAATGTCGGTAAGCAGCGGCATTTGCCAGTTGATGATGTCATGTTGATATAAGGCAGCTTGATGTGCTGCGTATCTTCGTTTGACCTGAGTTTGTTTCTGGGGCGCGATGCTCGATATCGTGAATGGGTGCGATGTGTGAGCTGTCATAAAACTAACAGAGGTTCGCACCGCCGCTGATGGGGGGATGAGCATAATCTTTATGCGATTCGGCAATATTCCGGACTTCATTTGTCGTTTGATAACTCAATAGTGGCTGGGTGTCTCTGATATTTAGGATGCGATATAAGTTTAGGATGATTTAGGCGATGAATAGCTGATAGACTGCAAATATCTGTGAATATACTGCCCAAAATGTGGACTGGATATCTCATGGATGCG # Right flank : AGGTGACGAACGCGATGCTGGTCGGCGGCATCACCGCTTGTCCCTATTGCACGAACCTCCTCAGATGACGCGAATAAGCTCTACTGTGGGCTGTATCCAGTCGTATTTAAACGATAGATTATATCATCAATACACATCCATATTGACTTCAATTCATTTCTATCTTATAGTTTATATAACTTAACATCAGTCAATAGAGGTGAACCGTTCTTATGGGTATGAAATATAGAAGCTTGGCACGTTTGTTTCATGCCGACAGAACAAACGATTCATACAACAATCATGATCGACTTGCAAGGCAGCGTCTTGAAGTCGAGTCCACATTCCGCACCGGCGTCATCACCCCATTAGGCGAACTGTTTTGTGCCACGCCACGTGAAACGAGCATGCTCACCGAGCATATACTTCTCGCCGAACGGCGCGTATCAGGATTATGGAATCAGATACCCGGCGTGATGCGTTGGGACTGGATCAGGCATTCCATCAGCGAGGAACTGTTT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCCTCCTCGCGGAGGGTGCGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACCCTCCTCACGGAGGGTGCGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.30,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //