Array 1 67452-67751 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAQW01000003.1 Dolosigranulum pigrum strain KPL1930_CDC2949-98 NODE_8_length_67662_cov_86.215347, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 67452 36 100.0 30 .................................... TATGAACAAAAGGTATCAGGTATCTTTGCT 67518 36 100.0 30 .................................... CCGGATCTTAAGCAGTGCAGTTGATAGCGT 67584 36 100.0 30 .................................... GAAATCTTGAATGTGATGTTGTAAGGAACA 67650 36 100.0 30 .................................... CATGTGCCTCCTTCAGCAAAGTATCCATGT 67716 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTTTTGTACTCTCAATAATTTCCTATCACTAAAAC # Left flank : AAGCGATTTGGCTTGTCATCAGATATCCAGAAACTTATTTGGAGATAAATGATTATTTATCTTTTATTGAAAAAGTAAGAGTAATTGCTCAGGAAACAAAATTACTAAAGATAATAGTGATTCATTACAGACAATTAGAAAACAATATATATTCAAGTGAATTTATTGATAAGACAGTTCTAGCAATGAACCGATTTGAGCAATTACCTGAGTTAGAGTATTTTAGAGATAATGTTCAAAAGTATTACCCAGATGAAATGACAGATACCGATAATATGCTCACCCAACGCTTTTATAGAATATCGCATATCATTGGTGAGACAGAAATTTATAAAAATTCTACTATTTTCACAAAAGATATGATATTATTAAAGGTGTTAGGGGACATAGTAGAAATGCCGGTTACATTTGAGACGTCAGATGAAACGCTAAGTGCGTTAGAAACTGCATTTCTACTAGAGTAATATCAATCTCGAAAAAAATCATTTGGTTAATTTGAG # Right flank : AATTTGCTGTTTAACCATTGCGCCGACTTGGTTTTTGTACTCTCAATAA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAATAATTTCCTATCACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 287078-286501 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAQW01000054.1 Dolosigranulum pigrum strain KPL1930_CDC2949-98 NODE_93_length_456346_cov_70.970848, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 287077 28 100.0 33 ............................ CCGTATCTACATATTCATTTTTTTGATAGTATG 287016 28 100.0 33 ............................ TGGACGCATTGAAACATAACCTTGTTTTTGAAC 286955 28 100.0 33 ............................ CACTAAAAGTAACACAATTACTATTACATAATA 286894 28 100.0 33 ............................ TAAAATTGCGACGATCCGCTTCAAATAAGGTTG 286833 28 100.0 33 ............................ TATCCTTTGAGAACAACTGTCTTGTCGGGAGAA 286772 28 100.0 33 ............................ TAGTCTTAGTGTATTCTACCTCATTCTCGTATA 286711 28 100.0 33 ............................ TATTTTCTAAATCTCTTATCAATAGTCTGAGGG 286650 28 100.0 33 ............................ TGCAAACAAACATTCGCAACGGAGCTGATGAGT 286589 28 100.0 33 ............................ TAGTCCGGGGAAGTCAATCATCACAAAGAAATT 286528 28 82.1 0 ....................A.CA.A.T | ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.2 33 GTCTTTCCCGCACACGCGGGGGTGATCC # Left flank : GATATTGTAAATGACCATATAATCGAGATAGGTGCCTATAAAGAAGTAAACGGTGTACCATTTACTTACCAATCATTAGTTAAGACTGATAGACGGTTAAGTAAATCCATTACACAATTAACAGGATTAAGTGACGGTGATTTAAAAAATGGTCAGAGTTTAGAAAAAGCTTTAATAGGATTAGTAGATTTCATAGGAAACTTACCAATAGTTGGATATAATGTTTATTTTGATTTAAAGTTTATAAATAGAGATTTAAAAAAGCTATCTTACGGTACACTTGGTAATGATGCGGTGGATATAATGGAATTTGTCAAAAAAGATAAACAATATGTTTCAGGTTATAAATTGAATGATGTGTTGAAAGAATATGGGATTGAAAATATGCAGCCACATAGAGCACTAGAAGATGCTAAGAGCACATACTTGCTTTCTAAAAAACTAAATGAATTTGTGAGGATTATAAATCAAAAATAGCATAACCAAGGGGATCTTTTAAT # Right flank : TTCTGAGTACAAAAAGTTTTTTTCAGTTTTTAAAGCTGATGTAATATACACTCACAAAGTTGATGTGACCTCCAAAAGTTGAAGTTTTTATATTGGTGATTAAGCATGAGATTGAGTGGTCTATTATGGTAATTGATTGTAGATGGTTCCTTCCCATTTTCTAGGTAATACTAGTTTATTGGGGGATTTTTGTTTATTCAGGAGACAAGCTACTTGTGAAGTGTTTCCCGTGATTATTAGTCGAAATTGCAGGGGAAATATGCGATAATGTAGAGTGAGGAGTGATTGCTGTGAGTAAGGAATTGTTAGTATTGATTGATTATGAAGTGGATGTATTAGAGACGTTTCGAGAGATGGCTAGTGAATATCAGTTGGTGAGTGAGTTTGAGGAAGCTGATTTTTCGAAGGTTGAGATCGTACTGGGTTGGGATGAGCGGTTAGTTGATGTGCTTGAGTCTGGTCAGCATCAATTGAAGTGGATTCAACTGCCGACAGCTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 455855-456484 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAQW01000054.1 Dolosigranulum pigrum strain KPL1930_CDC2949-98 NODE_93_length_456346_cov_70.970848, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 455855 36 100.0 30 .................................... TAAACCAACTTGTCACAGCTTCGAGAGGTA 455921 36 100.0 30 .................................... AGAAAAAACGGAAGAGCTGAACGTTGGTCG 455987 36 100.0 30 .................................... GAATAGGACGAACTAGTAGATACGAAACAA 456053 36 97.2 30 ............A....................... GACGTGGCAACACTTGAATTTCGCCAATGA 456119 36 100.0 30 .................................... CCCGACCCCCTCTTTATTTTGTAACTTTAT 456185 36 100.0 30 .................................... AGAGCAAGGAAACAAGTTCCGGGAGGTGTT 456251 36 100.0 30 .................................... AAACGATGAAACAGCAACAAAAAGAAATGC 456317 36 100.0 30 .................................... TGCGCAAACGGTGGAAGTCGGCGAAGATAA 456383 36 100.0 30 .................................... CAAGTCGGCGCAATGGTTAAACAGCAAATT 456449 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 99.7 30 GTTTTAGTGATAGGAAATTATTGAGAGTACAAAAAC # Left flank : GCTGAGTTCTGCGTCCACTCATACGTGCTCACCCCTTGTTCTTCTTCCGTCAATTGGACCGCCGAGCCCCCTGACAGCGGAATAATAAACAATTGCGGCTTATTATTGTCCGTATTAGTAGACAGATAAGACAACCACTTGGCATTCGGCGACAGCGCCAGCGATGTATTGCTCTGACCACCATCACCCCAATGCACCCTCTCCCCCGTCTTCTGATTCACACTGTAAATTGTTTTCTGATAATTATTCTCTTCTTCATCCACCAACGTCTCAACAAAAAACACCTGATCCTGATGAACAACCGGCTCCGAAACCGTCTTTATCTCATATAAACTCTCATTGGTCATAACTGACATATCATAACTCCTCTAAGCTTTTAAGGTAACTTTATTTTACCGGAAAAAGAAATCACCGTCCAACTAAAAACAAGCTACTACAAGGAGGAAATTGATCGGAGCGAATTTGGAAACTATCGAGGAGTGGATGCTAGAGATAGAAAA # Right flank : | # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTGATAGGAAATTATTGAGAGTACAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //