Array 1 287841-288176 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MLVQ01000007.1 Salmonella enterica subsp. enterica serovar Bareilly strain CFSAN045003 CFSAN045003_7, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	=============================	=================================	==================
    287841	    29	 100.0	    33	.............................	TAGTGCGGTTTATTGCAGACGGCGATAAACGGC	
    287903	    29	  96.6	    32	............................A	GCTGTAAAATCAGGGGAAATCACCGTCTACCC 	
    287964	    29	 100.0	    32	.............................	CAAAATACCATCGGGGAATTGGTAGACAGTTT 	
    288025	    29	 100.0	    32	.............................	AATCGGCGGTATTTTGAATTAGCGTTCCACTT 	
    288086	    29	 100.0	    32	.............................	TTTATGGACGAGTTCTGGAAATGGTTAGCTGA 	
    288147	    29	  96.6	     0	............T................	|                                	A [288174]
==========	======	======	======	=============================	=================================	==================
         6	    29	  98.9	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                 	       

# Left flank :   TAAAGTATGATGAAATGAAGTAGTTAAATTTAATTAATTAAAGGTATTCATGGAAATGGATGTAGATAGAGAAGCTACAAAGATTTTAGTGAATCTAATGTAATAACTTCTCTATACAACGGAGTTAGAATAATACCTGTTATCCAACCAATCCAAAACGTTTACTGTAATAGCTAGCTTCTCCGGCATCAGATACCAGCACAATCTGTCCGGAAGGGCGATGGTGGCGTTTTCTGAAACAGGCTAATGTTTCCTCATCTGGACATTGGAATGTACCAGAATTTTTTTGCCACCATGATTTTCGGACGGATAAGCGACTTTTTTCCCAGCAGAAATCTATTTCATCAACTAAAGGGCGTAGCTGTCCATCAATGTCTTTTCTGGCGAGATAAACATCAACACTCTCTTCACCCAGACGGGTAGAAAATTCTCTATCTTTATCCCATAAAAAGTCGCTGGCTTCCCGATCGTAACCGAGATCGTAACGTAATAAATTTTGC
# Right flank :  GTTTCACCAGCATATCAAGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGTAACGTATTTTTCTTCTCAGCGTCACTCATTCG

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [1-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.65,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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