Array 1 27592-25916 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJUR01000021.1 Staphylococcus pseudintermedius strain 113N SP113_S4_L001_Assembly_Contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 27591 36 100.0 29 .................................... GCAGGAATCGGTTTTGTCCTGTATGCGCG 27526 36 100.0 31 .................................... CATTTATTGCGTATGAAGAAGGTCAAGAAGA 27459 36 100.0 29 .................................... GAAAAGTTTAATTCCTACTTTAGTAACTT 27394 36 100.0 30 .................................... TTTACATTGCTAACGAAGGCTTATCAATTG 27328 36 100.0 30 .................................... TGCAGGTTAGTTTCGGCGCACAACGTGTGC 27262 36 100.0 29 .................................... GTAACCTTGTATTGAATTAAGCCGGAATA 27197 36 100.0 29 .................................... GAAAACGTGCAATGCAACAAATTGCTGAT 27132 36 97.2 29 ............................G....... CAGTATTTGATATCATCTTGCAGGAGTTG 27067 36 97.2 29 ............................G....... TTAATTGATGTTATCGCAACAGGGTCGAG 27002 36 97.2 30 ............................G....... ATTCACCACGTGTCATCAATTCGCGCTCGT 26936 36 94.4 29 .......T....................G....... CGATAAAAGTAATCAAGATGTGGTCTTTA 26871 36 97.2 31 ............................G....... TGCTTTGCTTGTACTGGATATTAACGCTTGT 26804 36 97.2 30 ............................G....... ACAAGCGAACGGTTTACAGTGAGTGCGTTC 26738 36 97.2 30 ............................G....... GCGTTATCTGATGTATTGAAAGATACAGGT 26672 36 97.2 30 ............................G....... AATTCTCTTGTTTTTATTACACAATCGGTA 26606 36 97.2 29 ............................G....... CTTTCTAAAAAACGTTGATACGCTTCTTT 26541 36 97.2 29 ............................G....... ATCAAATTGCAATGCTGCAACCATGTGTA 26476 36 100.0 29 .................................... GTTAACTGAACTCGAGTGTTGGCGCTTGA 26411 36 100.0 30 .................................... ACGGACCTCGGTTAATATACGTATGGAATG 26345 36 100.0 30 .................................... GCCAAACCTGTAATGACATCAAGCGCCATC 26279 36 100.0 29 .................................... GAATACGCCGTCGTCTTACCGCTTGCAGT 26214 36 100.0 30 .................................... TAAACATGTTTTCTTTAATCGCAAGTACTT 26148 36 100.0 30 .................................... TTGGTTGCTATATGCAAAACATCAAGACAA 26082 36 100.0 29 .................................... CACATTGCGTGAACAAATCGAGGGCGTTA 26017 36 100.0 30 .................................... GATGGGAATCCATTTGCAACTGACAGGCGC 25951 36 80.6 0 ..........................AC.TC.TC.A | ========== ====== ====== ====== ==================================== =============================== ================== 26 36 98.1 30 GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Left flank : TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTCACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGTGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCTAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG # Right flank : CCTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGTAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCACATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACATATCAGCTCGTGAATGAAAATTATTTAGCGCATATG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Alternate repeat : GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 5445-6603 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJUR01000048.1 Staphylococcus pseudintermedius strain 113N SP113_S4_L001_Assembly_Contig_48, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 5445 36 100.0 30 .................................... AACGCTTAGGAACTACGAGACAACACATTA 5511 36 100.0 30 .................................... AGAATCCTGTAGTTACTAAAGAAGATGTTT 5577 36 100.0 30 .................................... GCCGACGTGTATTTGTTACAGAAGTTGTGT 5643 36 100.0 31 .................................... TTGATACCCTCTAGCACTTCGCCGTTAGTAT 5710 36 100.0 30 .................................... GCGGGAAAGACAGAAAAACAATCTCAATAA 5776 36 100.0 30 .................................... TTCTCCTCATTTTTTGAATGTTCTGATTTC 5842 36 100.0 30 .................................... GGAGCCTCATACATGGTGGCAACAAGTTAT 5908 36 100.0 31 .................................... GAACGAAACCGTAACTATCCCATCATACTGT 5975 36 100.0 31 .................................... AATAATACTCAAACAAACTGGCATGGACCTG 6042 36 100.0 30 .................................... TTCCTCGTCATCTTCAAAACCACCATAACC 6108 36 100.0 30 .................................... ACGAGACGACACAATACCACCTGCTCGGCC 6174 36 100.0 29 .................................... TTTTATATCTACTCAGCGCGATGCTAGGC 6239 36 100.0 30 .................................... GTAAATCTACTGTTCGTAAATGGGAAACTG 6305 36 100.0 29 .................................... TGCTTACGCTTTATGGACCACAAGGAGTC 6370 36 100.0 30 .................................... ACGGTTATGATGCCTTAGATGAAGACATCT 6436 36 100.0 30 .................................... ATTTTCCTCATAGTCTGGTTTATTATTCTT 6502 36 100.0 30 .................................... ATTCGCCATTGTTTGCAATTCCTCAATTGT 6568 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 18 36 100.0 30 GTTTTAGTACTCTGTCAAATTAGGTATAAGTGATAC # Left flank : CTATGTTTGGTACGTGTGCAGGCTTAATTGTCCTTGCGAAAGATATCGTAGGCGAAGAAGGCTATCTGCAAAAGTTAGATATTACAGTAGAGCGTAATTCATTCGGGCGCCAAGTCGATAGTTTCGAGTCTGAACTACACATTAAAGGTATTGATCAACCGATTGAAGGTGTTTTTATTCGTGCACCCCATATTCAATCAACAGAAGCAGCCGTTGATGTATTAGGGACGATTGATGACAAAATTATCGCTGTACAACAAGGTCGTTATTTAGGCGTATCGTTCCACCCAGAATTAACAGATGATTATCGCATGACACAATATTTTATAGAACATGTGATGCAGCAGTAGGAATAGATAACCTACAAAACACGTCTAAAGTTGAACCGCTATTCAAAATTAGGCGTGTTTTTATAAGGTTTAAATGGCTATTGTACGCATTATTATTAGTTTTTAAAATAAGTTGCTTCGTTTGATAGATACTGTATAATGAAGCTAGAG # Right flank : ATTTTCCTCATAGTCTGGTTTATTATTCTTGTTTTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTCAAATTAGGTATAAGTGATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 706-8 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJUR01000089.1 Staphylococcus pseudintermedius strain 113N SP113_S4_L001_Assembly_Contig_91, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 705 36 100.0 31 .................................... TCCATAGGTGACACCTTAACCTTGAATAAGT 638 36 100.0 30 .................................... TGATATAGGGTCGATAACTTTAAATATCAT 572 36 100.0 30 .................................... TCAAAAACGCAAACACAGCATTGTCTACAA 506 36 100.0 30 .................................... AGACTTAGACAAAGCTAAACAGTTGTGCAT 440 36 100.0 30 .................................... ATTTGATTATTATGACAAAGAAAATAGCAT 374 36 100.0 30 .................................... TTTGACAAAACCTCATCAGTCGATAAACAC 308 36 100.0 30 .................................... ATTTGGCAAACGTAACGCTCAAAGCACAGC 242 36 100.0 31 .................................... TGTCGGTTCACCTGATTGAAGCGGACCGTAC 175 36 100.0 30 .................................... TGTTTTTTATTCGTATGTTATCTCAAATTC 109 36 97.2 30 ...................................T TTCATAATAAATAAACATATAAACTAAAAA 43 35 75.0 0 ........-....T.T.TT...A..G.....C...T | A [31] ========== ====== ====== ====== ==================================== =============================== ================== 11 36 97.5 30 GTTTTAGTACTCTGTCAAATTAGGTATAAGTGATAC # Left flank : GTGATACATTCGCCATTGTTTGCAATTCCTCAATTG # Right flank : TATAGTAC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTCAAATTAGGTATAAGTGATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //