Array 1 53-1734 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXIQ01000038.1 Mesobacillus subterraneus strain MITOT1 contig_38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 53 32 100.0 33 ................................ GTATGATTTCTTGCGTCGCAGGTCCTCTGCCAG 118 32 100.0 35 ................................ ATGCCACAGAAGTCAAAGATGCGGATGCAGACATC 185 32 100.0 32 ................................ TTTACAACTCGTTTGGTCCGTCCGATGCGTAC 249 32 100.0 36 ................................ ATGTCCGTGACCCGATTACAAATGAACGAACGGAAG 317 32 100.0 34 ................................ TCCTGCGATTCGCCAATCGTTCTTCCTCCGCTTT 383 32 100.0 34 ................................ CGGATGGATGACCGGGAAGCATGCTCCATCTGTG 449 32 100.0 33 ................................ AAACTTATCAAAAGTGGAGCCTATGACTATTAA 514 32 100.0 33 ................................ AAAATAATCACCTCATATTTTTTATTATTTAAA 579 32 100.0 35 ................................ CATCCACCCGCGCCAAACGCGTTAGCATGGATAGA 646 32 100.0 34 ................................ AAAAAATAAACCCACAAAACGAATCGAGTTTGAA 712 32 100.0 35 ................................ TTTTCTCAAAGAACTCAATGAACTCATAATCATTG 779 32 100.0 34 ................................ ATCCGTCGTCACCAAGCCCCGGATCGAATACGAC 845 32 100.0 33 ................................ ACAGATGTGACGGATAAGCAAGTGCTAGCTCGC 910 32 100.0 33 ................................ AAATCTTTTATGATGGCTTTATCCCTCTCTGTT 975 32 96.9 33 ................A............... TAATAACTCGGCTTGTGATAACTTGGATAAGTC 1040 32 100.0 34 ................................ TTTTCTTTGGTATAGAATGAGTATTCAAACTTTG 1106 32 100.0 35 ................................ CAGAAAGTGAAAAACAGCCATTTATACTGCTCTGC 1173 32 100.0 35 ................................ AAACAATTTGGCAATTGAGAAATCAGAATAATAGG 1240 32 100.0 34 ................................ CGCAAAGTTTCGGCAGCAGGGGGGTACGCAAAAT 1306 32 100.0 36 ................................ CCAACCTCCGAAATAAAGATTCCGTGTCTGCGGCTT 1374 32 100.0 33 ................................ TTAATATTGTTCGTGTGGGTATATCTGTCCCAT 1439 32 100.0 35 ................................ ACATTATAATCAAGGGCAATCTCCCACAGTCTGTG 1506 31 96.9 34 ................-............... GACACATATGAAGCATGGACAAATTGGAATCAAT 1571 32 100.0 34 ................................ CAAAATCCTAATTGATAGCCTGTAGTAAATTCTA 1637 32 100.0 34 ................................ CCATTACCAATTGTCGGTAGATTCATATACCGAC 1703 31 87.5 0 A........-...A................G. | T [1715] ========== ====== ====== ====== ================================ ==================================== ================== 26 32 99.3 34 GTCGCACCCTGTACGGGTGCGTGGATTGAAAT # Left flank : CGGGTGCGTGGATTGAAATATCTCCTTTGCGATCTGCTTCTAAAGCTTCGCTG # Right flank : TGAAGAATCAGATACTATGGTATCTGATTCCGATGTTTGGCATTGTGTTCGTGTCTTTTGTTCTAGGTGAGGTGCTATTGAATTCTTGACGGTTCCTTATTTATGAAGGCTCACTATTGGTTAATCGCTTGTCGATTGTCAAAGACTTCTATTATTCCGATTAATTAAGTAATTAATGAATTAAAGGTTCTTGCAGGTGTGACTTTTGCTATACTCCATTGAGTAATCTATATGCTATGTTAATAGTGTTAAATACGTCATAAAGGAGTTTTTTTATGAGTTGTGGATGTTCTCAATTGAAGGATGGCAAAGCCATTGTCGACCATGTGAAAAGCAAAGGAAAAGAAAAAAATAAGCCGCGCATTGCCCATCAAATCGCCTGTGAATGCGGTGAAATGTTCACGATGGAAACGGTGATCACTAATTGCCCTAGCTGCGGCATGACATACGGCGTTACCCCGTGCAGTTCCGGGGATATCAATAAAGTGAAAGCAGCAGGA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTGTACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTTGTACGGGTGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,1.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 52289-52584 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXIQ01000015.1 Mesobacillus subterraneus strain MITOT1 contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 52289 32 100.0 33 ................................ TGTTACATCGACATCACTGAATAGGATGCCTTT 52354 32 100.0 35 ................................ CCCTCGACCCATCCGACTGTCTGGCCGGCTACGAC 52421 32 100.0 33 ................................ GTGAAGTCACCTTTGCCTGTCAAGATGAAATGC 52486 32 100.0 35 ................................ TAGTTATTCTGCTGAAGTTTTGGAATACGAAAGAA 52553 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 5 32 100.0 34 GTCGCACCCTGTACGGGTGCGTGGATTGAAAT # Left flank : AGATGAGTACCCACCTTTTTTATGGAAGTAGGTGGATATTTTGTTAGTACTAATCACTTATGATGTCAGCACAATTAGTAATACTGGTCAAAAGAGACTACGAAAAGTTTCAAAAATATGTCAAAATTATGGACAACGAGTCCAGAATTCCGTTTTTGAATGTGTTGTCGATTCAACCCAATTCGCAGCTTTAAAAATTGAACTTGCGAATGTTATCGACAAAGAGAAGGATAGTCTTAGGTTTTATCAATTAGGCAATAATTACAAAAATAAAGTGGAACATTTAGGTATAAAAGAGTCGGTGGATGTAGAAGGTCCATTAATTTTTTAAGTGCGAATGGGAAGCGAACATGATTAGCTAAGGGGATTCGCACCTAAAATAACTGTTTGTTCTCCCGTTATTTGTAAAATATGTTTATGTCCTCTAATATTTTGGAGGAAATAGTGTGTTTTTGATCAAAATCCTCCCATAAATTAGGAGTCTATGGCCAAAAATCGCT # Right flank : TGATGACAATGCCAATTGATCACTACTATAAACCGTCGCACCCTGTACGGG # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTGTACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTTGTACGGGTGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //