Array 1 259127-259493 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUA010000001.1 Listeria immobilis strain FSL L7-1517 NODE_1_length_574938_cov_17.942894, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 259127 36 100.0 28 .................................... AATTATATCAATGACCAAAAGATGGTAG 259191 36 100.0 30 .................................... CGTTAAAGTAAAAGTAAATGATTTTGACGG 259257 36 100.0 30 .................................... TCGAATTAATTTTATGCGTTTAAGTGGGGA 259323 36 100.0 29 .................................... AAAAAATAGAAAGCTTGTTGCATTAACTA 259388 36 100.0 30 .................................... ACGAAAGTAGTTGAAGCGATGGGCGGCGTA 259454 36 97.2 0 ...............................C.... | TGA,T [259479,259484] ========== ====== ====== ====== ==================================== ============================== ================== 6 36 99.5 30 GTTTTAGTCCTCTTTCATATAGAGGTAGTCTTTTAC # Left flank : CTTGTTGTTTTTGTAAGCTTTCTTCTAACAATTGTGAGAGATTTATTTCTATTCTGTATTCTTCACTTTTGACAGGAGTATTTTCCTGAAAATAATATAAACTTTTTTTGAAACGATGATTGAAGGAATCTGTGATATTAAGTTCAGTGACATTCGAAACTTTGATTTTTTCCTGTTTATTTTTTTGTAATAATCCATGAAATAATTTTTTCATTTGCTCCGGATGACGAATAGTTTTGTTTACCACACTTGTGTAAAAAGAACTTTTTTTGCGATGCATAATTTGTTCAGTATTATCCTGCTTTTCACTTCCATAAACTAACCGTCCCCCGTATTTATCCCTAGACATTAGCACTTTTTTTCTATTAATCTCTACTTTGGTAATTCTCATAGTTTTCACCTCAATGATTTTTTGTTCTCTCTCCTATTGTACATATAATCACAAAAAAATAAAACACCTAAATGATGGATAAGTGTTATTAGACTTATCCACATTAGAC # Right flank : CTTCAATAATAGTAATTAAAGTAAAAAATGTAAAGCGTTTAATAGAATAGTTTGAGGTTTGCGTGAGAATACATTGTTTTCCGGATACTCTATATCGCTTTAGAGCCATTTTCCATTATGTGAATTTAGGATTTTAAAAAAAGAAATATTTGTCTCCACTCAGTTGTCCTCTTGTTTATTAGACTTTTTAGATAGATACTTATGATATAAAAACCAATTGAATATTGTACCTAAGAACAAAAGTATTCCTGCAATCCATTTAAAGTTATGATTTAGATATGCATATGAAAAATACAGGGCGATAATTATTAGAATAATCATTCCGAAAAATAAATGAATGAAGCTTTTTTCAAGACAATCATCTCCTTTTATGCTTTTTATGTAATATAACATAGAGTAACTTGCATTAAACTGAATATTTTCGAACTTCAGCTGGGACGTAATCAGTTATAAACTGGTTGATTTCTTCTAATGAATTTGAAAATAAGGTTTTATCTCTA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTCATATAGAGGTAGTCTTTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 124648-125641 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUA010000002.1 Listeria immobilis strain FSL L7-1517 NODE_2_length_382683_cov_23.501218, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 124648 29 100.0 35 ............................. AGCATTGATACTACTGTATCTAAAGAAGCTTCAAC 124712 29 100.0 35 ............................. ACTTAAATCTACACCAGTTAAATCGGCACCATACA 124776 29 100.0 34 ............................. TTCTTTAAATCATCTTTTAACTTAGCTTTATCTA 124839 29 100.0 34 ............................. AGAGGCTTTAGATGAGGCGTTAAATTATTTTAGA 124902 29 100.0 34 ............................. TTATCTGCTCCATCTTTTTTCATGTCCGAGTACA 124965 29 100.0 36 ............................. ATTGAAAAAGCAAAAGACAGTGTAAAAAAAATTATT 125030 29 100.0 37 ............................. ATCAGAAATGTTAAAAGTTACTTGTATATGGCGCTGA 125096 29 100.0 36 ............................. CACTGATTTTAAAGGCGGTAAAAACATTTTAGCAAG 125161 29 100.0 36 ............................. AAAATAGCAGATACAATAGATGCTCTTTCTTGTTCA 125226 29 100.0 35 ............................. TTTACAGCAAATGAAGTAAACCCCATAGACGCGCT 125290 29 100.0 36 ............................. TCAGGAGTGACAATGTTTTCTTTTGCGACCACATCG 125355 29 100.0 34 ............................. TGTAGATTATCATGTTTTGTTTCTATTACTTCGA 125418 29 100.0 35 ............................. GACAATCTGGGAGCGATGTATACAGAAGATGAACC 125482 29 96.6 36 ........................G.... ACCTTTACCATAGCTTCCATCTGTTTCATGTTCCTA 125547 29 100.0 37 ............................. GACGCAAAATATCTAGCGGATGGTATTAGAGACCAAT 125613 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 16 29 99.8 35 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : GCGCAACAACTTCAGCTGATATTTTACTAGAAAAGGGTGCTACAGAAGTAATTGCTTGTGCAACCCATTCAGTTATGGCTGGAGATGCAACAGAACGTTTACAAAACTCAAAAATCAAAGAAGTTATCACATCCGACTCCATCGACCTTCCAGAAGATAAACAATTTGAAAAACTAACCACCATCTCGATCTCTCGCATTCTTGGTCGAGCAATTGAAGGCGTTCAAGAAAACCGCTCATTACATCCATTGTTTTAAAATATCATTTAAAGTAGAGACACAGTGGCGTCTCTACTTTTTTGCACACGAAAATCTGTCGACCGTTAGTAGTGCAAAAAACACGCTAGGTCGACAGAAATTTGTAATTACTTGCAGGAGAACGATTGAGACATTTTTACAAGCAATAAAGCAGAGTAAACACCCTGATTCTTCCCAAAAATAAAGCCGGTCGACAAAAAGTGAGGGTTGAGGTAAGATGGGAGTAAGAGGAAAATGGAGCGG # Right flank : TATGGTATGTGTTATGTAATTAGGTACAAGTGGTCTTATTTTAATTACTCACTATGTATAATCCGTTTAGCTCTATAACGTAGCTGTAGCGCACATTCTTAGTTAGCCTAGCTTCGATAAAGAAGCAAAAATTAGAAATAAAAGTTTTAAACTGTTTTTCCCGACTTAATGACATAAAACAATAAAACGACAAAAAGGGGAATATATTATGAAAAAAACATTATTTTTTTTACTTTTGCTATTATTTTTACTAGCTGGTTGCGCGGCGAAGGACGAAGAATTGTCCAAAGATACAGAAATTTATAAGGAAAATGTCATAAATGCTGATTATAAAGTGCCTCAAAACTTGACGGAACTTGCATCTGCCAGTGAAGATATTGTGCAGGTGAAATTAGTCCGAAATAAAAAAAGCGGCGAAGAAAACAATACAATAAGTGAAGTAGAAATAATTAAAAGTTACAAAGGTACATATAAAGCAGGAAATAAAATTGATATTTCAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 132099-132573 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUA010000002.1 Listeria immobilis strain FSL L7-1517 NODE_2_length_382683_cov_23.501218, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 132099 29 100.0 35 ............................. TCTGAAAGTTGTGAGTGTTATGACAATGTAGCCAC 132163 29 100.0 34 ............................. ACCAATCAAGAACGTGGTGTAAAATCTCTCTTGA 132226 29 100.0 36 ............................. ATATTTGTTGTTAAAAATATCAATAGATTCATTACA 132291 29 100.0 35 ............................. TCTGGATAGGCAATCTCAACACTCACACAATCTTT 132355 29 100.0 36 ............................. GGAAGAGTATGAATAAATGAATACTTTGCGATTAAC 132420 29 100.0 37 ............................. ATTAAATGAACTACTAAAATAGTAATGTGGGTGTGAA 132486 29 100.0 31 ............................. ATCAAAGTACTCGTCTGTACCCACCATTTTC 132546 28 82.8 0 .......-.......CA......T...G. | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 97.8 35 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : ACATAGAATGTCACTGTACCATCTTTCTTTTCTGTTGTTTTTGTTTTGCTCGAAGTTGAATCGTTCCCACAGCCCGCAATCAGAAGTAAAGCGCAAAACATAACCATCACTTTCAAAACATTTTTCTTCATTCTTTTTCTCCTTTTTTATAAGTATTTAGCAAAATAAAAACCCAGATAAATTAGAAAAAAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAATTAAGGTAACATTCCTGAATAGGTATTTGTATATAGGATGATTTTAGCATAAAAGGGAAGCGTTTACAAGAGCGTTTTTTCTGTCGATGGAGAGTAATGTGAAAAATACAGGTGACTGACAGATTTTGTGAATGTACTGGGAGAGAATGGAAGTAACTGCTTTTCTATTTTAAAATCATAGTTATAAACAGCATAAAAGTGAATTTTATAATCGGTCGACAAAAATAAAGGCGTGAGGTAAGATGGGAGTAGGGATAAAAAGTGGCGG # Right flank : TATTGGAATTAATGGTTTTGGTGGTAGAGATGTGAATATTTTGACTATGACTTATAAAACAGCCTTTGAATTCTAGATATTTGTAATAATATTCATTGCTTATTAAATATATTTTAAAAAGTAGTAACTAATCAAGCTCTGAATCACCTTGAGAATAAAAGTGAATTATTTCAATAATATAAATGAGAAATGCCAAGAAATACACTACTTTTTTAAGTGTTTTATTTTCACTGGATTTAGTAGTTCTTTTATGTTAAATTAAACACAAATAGCGGAGGAGGTGACACGATGAGACTACGAATCAATTGTGATTTTGAATCAAATATAATTCCAAAAGATTATCGAAGTAAAATAATCAGTTTATTCAAAACAGGAATTGAGAAAACTGTCCCAGAAAAATATCAAGCTTTTTTTGGAAGTAATCAAAGGAAAAATTACACTTTTTCAGTATATCTTCCTAAGCCTCAAAATAAAAAAATGGAAATTTATTTAGAAGAGAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 141180-143248 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUA010000002.1 Listeria immobilis strain FSL L7-1517 NODE_2_length_382683_cov_23.501218, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================================== ================== 141180 29 100.0 38 ............................. TTCGCTGATGGACAGGGCATGATGTTACAAGTTAAAGG 141247 29 100.0 38 ............................. AACGGTATACTCGTCAAGTATACTATCAGTGTATGTTG 141314 29 100.0 37 ............................. TCGTTTCTTTCGCCTCCCAAGAGATTTTATTTTCAGG 141380 29 100.0 38 ............................. GCTGTCATAGTTGATTTTAAGTCACTTTTGACAGAACG 141447 29 100.0 39 ............................. GTCGTATAAGTCAATGTGTCATCTTTCAAATATATTGAG 141515 29 100.0 47 ............................. CACATTTTTGAAGATGAGGAAGATGAGGAAGATGAGGAAGAATAGAG 141591 29 100.0 37 ............................. CAACTAGTCCCCACTATATCCCTATGCAACGACTGGG 141657 29 100.0 37 ............................. TATCATTTTAAACTACGATACTTAGATGAACTAACTG 141723 29 100.0 36 ............................. ATAAATACTCACCGGAATATTTAAAAGCTTTTATTG 141788 29 100.0 37 ............................. ATCGATCGTCAAGATGTCGCATTAAATAATGTGAAAG 141854 29 100.0 37 ............................. GCGTTTCATATATATTTCGACGTCGCTTTCATTTTCG 141920 29 100.0 36 ............................. ATAGTAACTCTGTATTGTTTGTTCATATATAGTACG 141985 29 100.0 39 ............................. GCATTTATTATTGTGCCTCGTAACCTTCACATTTTCTCG 142053 29 100.0 37 ............................. CCTAGTATCCATTGTCCTTGGCTCATTGTACTTCACG 142119 29 100.0 37 ............................. AAAGAACAACATAACTAAAAAGGCTACGGTTAAATTG 142185 29 100.0 37 ............................. GCGGTTACGTCGTACCCATATTTCTTCTTGCTGTTTG 142251 29 100.0 36 ............................. AAAGAATAAAGGAATAAATCTAGTGAACTATCTCCG 142316 29 100.0 35 ............................. ATAATCTGCCCCTGTTTCAACTTTTGACCTACAGG 142380 29 100.0 37 ............................. TATACTCTTTTTGCTACTAATCTACCTTTTTTGTTTG 142446 29 100.0 37 ............................. ATTAATCATTTTATAAAACACCTGCTTCCAATAAAGG 142512 29 100.0 38 ............................. CAACACTAAAAGTCACTGTATAGGTTCCTTCTTTATCG 142579 29 100.0 37 ............................. TATCGAAGTCCCAGCTTTTACCAATGTAATCAACCAG 142645 29 100.0 37 ............................. ATATTGGATTCAAAAATTCCAATTACATTTTTCTCCG 142711 29 100.0 39 ............................. ATACAACACCAGCCATCACTTTGAAGTAAAGGCGTTTCG 142779 29 100.0 37 ............................. ATATTAGCTGGAACTTTGTATCCTGCTTGCGAAAGAG 142845 29 100.0 37 ............................. AAAGTGGTGCTAGAAAATAAGGAGTGATTTTGAAAAG 142911 29 100.0 38 ............................. CATTTTTCGAGTTCGTGCGTATGTTTATACGTTTTGCG 142978 29 100.0 36 ............................. ACAATATTGTAACATAAAACTAATCCTTCAAATCGG 143043 29 96.6 35 ............C................ TTTTTTGTAAGTTCCGATAAATCTAAACTAGTTTG 143107 29 96.6 84 .......T..................... GAAGAATTGTGTGAGGAAGTTATTGAAATTTGCAAAGAAATGTAAATAGGCTTACCGTACGGAACTTATGTAGTAAGTGAACCG 143220 29 89.7 0 ...........CC.....A.......... | ========== ====== ====== ====== ============================= ==================================================================================== ================== 31 29 99.4 39 TTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAATTTGGTGGTGAGTAGTATATGTATGTAATTCTAATTTATGACATTTCTGTTGAATCTGGTGGTGCTAAAGTTTGGCGCAATGTCTTTAAAATTTGCAAAAAATATTTAACACATGTTCAAAAATCAGTATTTGAAGGAGAAATAACTCCAGCACTTTTGGTGAAATTACGAATGGAATTAGATAATTATATTCGTCAGGATGTTGATTCTGTGATTTTATTTTCTAGCAGACAACAAAAATGGCTAGAAAAAGAATTTTGGGGATTAGCGGATGAAAAAACATCGAATTTCTTTTAGCTGAATTTTTTCTGTCGACCGCTAGTAGTGTGAAAAACACGGGAGGTCGACAGAAACATGAAATGCGCTGGGGGAGAAGCTTTTTCGGAAATCTTACTTGTTTAAAATAGGAAAACAAAACTAAACTTCACCTATTTTTGTATCGGTCGACAAAAATAGGCATGTGAGGTAAGATGGGAGTAAGGAAAGATTTTGACGGG # Right flank : TCTATCTACAGTTTATGAAAACTCTAGTAATCGATAACTATGATATTTTAATATGAGCAAGATTAAATTCTAAATCATTCATATTCTTCTCAACCACTTTAACTACTTTTTACGATATATAATCAATACTGAGATACTTATCTACAAAAACGCAAAAAAATGTAAATATCCAATATTTTTTCAATATATCCCAAACTTAGAGGTTAGAATTTCTAAGCTTTTTATAACCATCTAAAATATAATTAAGGTTATTTCCTCTTTTTTAAGCAGAAATTTCACAAAATACTCACAAATGCTTTCTAACAAAATGCTATACTAAAAGATAGGGAGAAATCCCCTCATTTTAGATAGAGAGGAAACGATGAGATGAGTGAGATAAAGGTACAAGAAACGACTTTCCAAAGCCATGCAAGCAACTTGGCAAGCGCCAGTGACGGGAGCTATTTACCACTAAAAAATGGTAATATGCCCTATTCAAGAGCCAATTCGATTAATGAATT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //