Array 1 16555-20368 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYFX01000012.1 Salmonella enterica subsp. enterica serovar Muenster strain 98-0001 NODE_12_length_179692_cov_4.90707, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16555 29 100.0 32 ............................. CAGCTTTAGCATCGGTCGACAGCCCATCTGGC 16616 29 100.0 32 ............................. CGTCCTTTACATCCCAGACCACACTAACGTCG 16677 29 100.0 32 ............................. CACTCGCTGGAGCTGGTTGTCGCTATCAGCAA 16738 29 100.0 32 ............................. ATGAATCTGTAATTCGTTATAGCTCATCATTG 16799 29 100.0 32 ............................. ATACGCTCAACCTAGCTCTTACTCAACTACAT 16860 29 100.0 32 ............................. GGGCGGGTAACAGCGTGCTTGGTTCTGGTAAC 16921 29 100.0 32 ............................. AGAAAAACCGCTTTGTAATTACTGGTCATGTT 16982 29 100.0 32 ............................. CGTGTCAGCCAAGGTGCAACGCTACTACGCAC 17043 29 100.0 32 ............................. GAAGGTGTTTTTTATTCAAAAGATAGGATACC 17104 29 100.0 32 ............................. CCAGTTTCTAACGATATCGTCCACCAGCTTCG 17165 29 100.0 32 ............................. TATGACTAATGCACAGTTAAAACGGGTATGGG 17226 29 100.0 33 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGAC 17288 29 100.0 32 ............................. TGTTCCGATGCAGCGCTTACAACGATGGGGAG 17349 29 100.0 32 ............................. TCAGCGCCGGCGATCGGGCCGCCGATTTTGTC 17410 29 100.0 32 ............................. GGCATGTCGTGGTTCAGGATGAGAAAATCCCC 17471 29 100.0 32 ............................. ATATTCAGGAGCGTATCGTGGCCGAGATCGCA 17532 29 100.0 32 ............................. CGGCCCCGTATAAATCTCGTGGCGCACAAATG 17593 29 100.0 32 ............................. CTCGCGCATTGTCTTTTGATCCCATAGCGTAT 17654 29 100.0 32 ............................. CGCATTCAAATGCCGCGGCATGACCAGCAGCA 17715 29 100.0 32 ............................. AATTGGTGTGGCCTGGCTGAAATGTCGGGCGC 17776 29 100.0 32 ............................. ACCCCGCATAGTCCTTGTCGTATAAATATTGA 17837 29 100.0 32 ............................. GCGATCTTAAATTTGCCGCCGCGTAATTTTTG 17898 29 100.0 32 ............................. CGCCCACCCTGAGTATTATCACTACTCCGGAC 17959 29 100.0 33 ............................. CCAGCGAGCGCTGGCTTCAGGATGGGGTTAGGC 18021 29 100.0 32 ............................. GGGCCAATAAATGACGCTAAAACGCGCATATA 18082 29 100.0 32 ............................. CCCTGGTAGAACTTTATACGCAAGCGCTTATG 18143 29 100.0 32 ............................. TCTCTACACAGGAGCACAGGACATGAATAGCA 18204 29 100.0 32 ............................. TAGCCGTCATTACAGAATTAATTACACGTGAA 18265 29 100.0 32 ............................. CGATTGTCCAGATCACATAAATTTGTATAAAA 18326 29 100.0 32 ............................. CAAATGGATTAGTGATAGCCTCCTTTTATTAT 18387 29 100.0 32 ............................. CATTTTCTCGCACTCTGTCTTGGTCAGCTTCT 18448 29 100.0 32 ............................. CCCATTGAGCACATGCACGTTGCCGGGTTAAA 18509 29 100.0 32 ............................. CGGCCCGCGTTGGTTATGAAGAAAAGCACTAC 18570 29 100.0 32 ............................. CGCACGATTCCATCACCTAAAAACGACCACTT 18631 29 100.0 33 ............................. CAAAATTTTAACGGCCATGACCAGGCAGGGATT 18693 29 100.0 32 ............................. TTGTCGCGCCTGGTATGTGGTGAGATTTGCAA 18754 29 100.0 32 ............................. TTTGGAAACCATGCCTGATCGCCAATATCTGA 18815 29 100.0 32 ............................. ATTAAATATTCCGCGCGCATTCAGGTACCCGG 18876 29 100.0 32 ............................. GGGAATGCCCCATTTGCAAGCGTCGCGGAAAA 18937 29 100.0 32 ............................. CTTGTTTCTTCTAATCTCTTTTCGCGTTGGTA 18998 29 100.0 32 ............................. ACATAAACGCACGCGCGGGGATCCGAATTTTT 19059 29 100.0 32 ............................. GTGAACGCGCAGAATATAGATGGGGACATTAC 19120 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 19181 29 100.0 32 ............................. TATTTTTGCGGGATCAATGTCGGCTCGAGCAC 19242 29 100.0 32 ............................. TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 19303 29 100.0 32 ............................. GTCGGGCTATGCGTCTACAGGCGGCCTCTGGC 19364 29 100.0 32 ............................. ATGCGGCGAACTTTGTCCACCAGTTCGTTACC 19425 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 19486 29 100.0 33 ............................. ATATGCGGAATCACCAACAACACGCGCGCCCTC 19548 29 100.0 32 ............................. GCATACCGCATTTTCAATAATTTCAGCACCGT 19609 29 100.0 32 ............................. TTGGCAATTGACAGTTTGCTGGATGTGGACAC 19670 29 100.0 32 ............................. ATATCCAGCGGGGTTTTATGCTGTCGGTAGAG 19731 29 100.0 32 ............................. AGTTATTCCCGGTGTTGTCTGCGAAACAACAC 19792 29 100.0 32 ............................. ATCGCTTCCAGCCGTTCTTTCTCCTGCATCAG 19853 29 100.0 32 ............................. AGCGTCTTTCTGCTCTTTCTTGGAGGCTATTT 19914 29 100.0 32 ............................. CCGCTGGCGGTGAATACCATGCGGCGTATCGC 19975 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 20036 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 20097 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 20158 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 20219 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 20280 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 20341 28 82.8 0 A.....................-.C..GT | ========== ====== ====== ====== ============================= ================================= ================== 63 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 88345-89958 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYFX01000017.1 Salmonella enterica subsp. enterica serovar Muenster strain 98-0001 NODE_17_length_90138_cov_4.95976, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 88345 29 100.0 32 ............................. CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 88406 29 100.0 32 ............................. TAATTTGCGGAGTTCGCGTAACTCACACAATG 88467 29 100.0 32 ............................. ATCAATATTAAACTCATGACCATGAGCAGTCG 88528 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 88589 29 100.0 32 ............................. GCTAAATGAGTATTACGGCACGTCTTACGGTT 88650 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 88711 29 96.6 32 ............................T GAGCCAGACTGAATTTTATGAAGAAATAGGTA 88772 29 100.0 32 ............................. GATTTTCGATAACGCCGCTTCAGCTCACTGGT 88833 29 100.0 32 ............................. AGCAAAAAACGTGGCCGCACGAACGCGGCCAG 88894 29 100.0 32 ............................. TTTGGTGATGCGATCGCCCCTTGTTCAATGAT 88955 29 100.0 32 ............................. CGCTGTGCGGTAATTACCTTTGAATTACGCAT 89016 29 100.0 32 ............................. CCAACGGTTTCCGTTGGCTTTTCACCTTCAGC 89077 29 100.0 32 ............................. CGCCCCTACAATACATCCTGATACAACAACCG 89138 29 100.0 32 ............................. TTCTGGCGGCAGAGATAGTTAAAATAGTTGCA 89199 29 96.6 32 ............................A AAAAACGGGCGCTGCGGGTCATTTTCGAAAGC 89260 29 96.6 32 ............................T GACTCATACTCGTCTGCGCCCTGCGCGCAAAA 89321 29 100.0 32 ............................. GCTAATTTATAAATCAAGTTAAAGCTTGATTA 89382 29 100.0 32 ............................. GCGTATGAGGGCGCGCAACAGGCGATGCGTGA 89443 29 100.0 32 ............................. TCTACGGGCGCACAGCGAAAACTACCGAGGAG 89504 29 100.0 32 ............................. GGCGGCAATATCCATCACTCAGCACCAGGGAA 89565 29 100.0 32 ............................. ATTTAATTGCGTCATAATATTAATTCCTGTAT 89626 29 100.0 32 ............................. GGTGAGAACAGGGTGCATGGGAGGGAATAATT 89687 29 96.6 32 .....T....................... CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA 89748 29 100.0 32 ............................. ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG 89809 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 89870 29 96.6 32 ............T................ TACCAACAATTCCGCGTTACGCCAACGGTAAC 89931 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATATGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGATGACCCGTCCTGAATAGCGTTGACACGTTCCAGACTTAAATCCGGAGAACGTGATGATGACTGAGTTCAAACGCACCCAACGCGATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //