Array 1 12426-11326 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_WCFQ01000045.1 Lactobacillus helveticus strain IMAU60204 Scaffold45, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	================================	=====================================	==================
     12425	    32	 100.0	    34	................................	ATTTTTAAAGGTTTTACCATCAATGCACCATTTA   	
     12359	    32	 100.0	    37	................................	GCTAAATAATCAGGACGCTTTCTGCAATAATTTCTCC	
     12290	    32	 100.0	    35	................................	TGGATATGGGTACCTTAAGGAAAATCAGACTAAGT  	
     12223	    32	 100.0	    35	................................	AACAACAACCTCGGTGACATAAACCCGTTGACCGT  	
     12156	    32	 100.0	    34	................................	ATCATCCAAGTTGACTAAAGGGGTAATATCAGCA   	
     12090	    32	 100.0	    35	................................	AAATTATTGGAGGTAAATAAAAATGAAACTCAGTA  	
     12023	    32	 100.0	    36	................................	ACGATGTAAACAGTGGCGGTAATGAGGCTCAAGGGC 	
     11955	    32	 100.0	    34	................................	TAATTGGGAAGTAGTGAACGGTATTGACCCTAGA   	
     11889	    32	 100.0	    34	................................	TCTCACGCAATGTTAGCTACCAATCATTCTTGCA   	
     11823	    32	 100.0	    35	................................	AAGCAGACAAGGCCGGAGCTGATGAATGCTGAAAA  	
     11756	    32	 100.0	    35	................................	CCTACCGCTACCCACCCTGCCTTGTTAATTACTTA  	
     11689	    32	 100.0	    34	................................	AAAGAGTAATCAACCTTTGTTCAGATATTGTGGG   	
     11623	    32	 100.0	    35	................................	TAGTGAAGTAACTATTGCTCCAGGTGCCATTGTAA  	
     11556	    32	 100.0	    34	................................	AACTAATTGACGATGGTGCTTTTGCGGCTGCATC   	
     11490	    32	 100.0	    34	................................	TTCTACAGTTGCTTATTACAGTACATCATTAATT   	
     11424	    32	 100.0	    35	................................	CTTTATTCCGTGGCAGCAAGCAGGCTCGATTGAAG  	
     11357	    32	 100.0	     0	................................	|                                    	
==========	======	======	======	================================	=====================================	==================
        17	    32	 100.0	    35	GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT	                                     	       

# Left flank :   CGAATACCCACCGTTTATGTGGAAGTAGGTATGAAGTAGGTATGCAGCATGATGGTAGTAGTTAGTTACGATATTAATACGGAAAGTAAATCTGGTCAGCGAAGGTTACGTCATGTAGCCAAAATATGCTTAGATTATGGACAACGAGTTCAAAATTCCGTTTTTGAATGTAAAGTTAATTCGATGCAATTAGAGTTGATGAAAGAAAGACTACTAGACGAAATCGATGATAGCCAAGATAGTTTGTATTTTTTTAATTTAGGGAAGAATTATAAAAATAGAATTAAGTCATATGGAATTAAAGAGGTTATAAATTTAGAATCGCCTGTAATATTTTGATATCGGTGCGAACTGTATGTGAACATGCTTTTAGTGAAGATTCGCACCAATTTTAAACAGGTGAAAAGTGATCTTTTGATAAAAAATATATTTTTATCAGGGTAAGTTAATTTGAAGCCCAATATTTAGAAATGAATTGAAATCATGATCTAAATATTGCG
# Right flank :  TTTAGGTCCATTGCGCTCTTGCCAGTGAAGTCGTGTCGCACTCCTTGTGATGCACTTGTGGGTGTATTAGTCGGCTTCTTCAACCCAGGCTTGAAGTACTAATTATTAAGAGGAGATTATTCAGATGACAATCGAAGAGATGCAAAAAGGCTATCAAAATGAAGTTGCTTATCAAAAACATATGCTTCGCAATCTAGGCTATTGATTCCAACTCTTTTTAACAGTTAGTGCGATTGGTTTGGTTTTAATTTACTATTTCCATCAATCAACTATGTGGCTCTTTATAATCGGAATTATTCTGATGGTCGCCGGTGTTTTAGGAATGTTTGCTTTTGGCTATGCTTCTTGGCGCGGACGGCAGAATGTCACTCTGGTAATCGAAGACTATGAGAAAAAGATTGCAGAAATTAAAAAGTTAGATCAAAATGCTTCCGGAACGGAAAAGATCCGTTTCAAATGATTCTTATATGAATAAAACAATTTCCCCTTCTCTAGAAATT

# Questionable array : NO	 Score: 9.26
# 	Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     F [10,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-2.50,-3.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,9.64   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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