Array 1 1647634-1645021 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT706985.1 Propionimicrobium sp. Marseille-P3275 strain Marseille-P3275T chromosome contig00001 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1647633 28 96.4 32 ...........................T AATAGATTTACTCACATGGGACGCCCGCGTCG 1647573 28 100.0 33 ............................ CAGAAGCCGGCACCGAATGGCACGTTTCCGCAA 1647512 28 100.0 32 ............................ GCGTCGGGGGCGGGTTGTCTAGCAAGGCTTGA 1647452 28 96.4 32 ...........................T CACCTGGACGCGAGGCGGGGTAGTGGCGGGAA 1647392 28 96.4 32 ...........................T CCGCCAGCCCAAGGCTTTCCTCCAGCTCGTCT 1647332 28 96.4 32 ...........................T TATTTCCTGCCGGTGAACTTGAACAAATGGGG 1647272 28 96.4 32 ...........................T AAGGCCGCCCGTCACGGTTTGTACCACATCAA 1647212 28 100.0 32 ............................ AAGTGCTAGTAGAGAAATAACGACCAAGATTA 1647152 28 100.0 33 ............................ GCTCTTCTTCGAGTTTCTGGTAGAGAGTCCATG 1647091 28 100.0 32 ............................ CTAGCAATCCACGTGGCTCGCGTCGGATCAAT 1647031 28 100.0 32 ............................ CTAGCAATCCACGTGGCTCGCGTCGGATCAAT 1646971 28 100.0 32 ............................ AGGCTCAGCAAATTGTTGCTCTCCATGAGTGG 1646911 28 96.4 32 ...........................C TAAGGTTAGCATGGGTTGACCCGCGCCGGGGA 1646851 28 100.0 32 ............................ GTACCTTTCTCGCGCTGAAGTCGCGGAACGTA 1646791 28 96.4 32 ...........................C ACGTCCTCGCGCGAGCTCCTAGCCGCCGGCTA 1646731 28 96.4 32 ...........................T TTGGCTAGCCGCGTCAGTCAAATGCCGACCGA 1646671 28 100.0 32 ............................ CAACGTTTCGAGCCATCGCAAAACTTGAGGAA 1646611 28 96.4 32 ...........................T AGCCGCCGCCTTATCTGTGCCCGCGACAGCGC 1646551 28 96.4 32 ...........................C GCGCTAGGAGCCTGCTACACGGCGCAAACCGG 1646491 28 96.4 32 ...........................T GTGGTTTTTTCTACATCCCCGACCACTTGCCA 1646431 28 96.4 32 ...........................T TGCTAGCCGCGCTGGACTCTCTGAACGTTGGG 1646371 28 96.4 32 ...........................C GGGTGGCCACTCTTAAAAGATGCCTCCTATAT 1646311 28 96.4 32 ...........................C AAAACCCCTCTCTATGCTGTAGCCGCAACGAT 1646251 28 96.4 32 ...........................C TCTTGTGGACAAACCCGTAAGACCAGAAGCAT 1646191 28 96.4 32 ...........................C CAGGTAACAACACGCTCAACCACTGGATTCAA 1646131 28 96.4 32 ...........................T ACTACGCGCCTGCCGACCTTGTGCAGACAGTG 1646071 28 96.4 33 ...........................C GAAACTAACCCGCATTGTTTCCGGATCCCGCAA 1646010 28 96.4 32 ...........................T CTCGTCGCAGCCTTCGACAATTACGTCGAGCG 1645950 28 100.0 32 ............................ TGAACCCGCCAGTCGTAGACCCCTTCGGCTTA 1645890 28 96.4 32 ...........................C TGGCACGCGGGCGAGTTCGCCGGAGACGGCTC 1645830 28 96.4 32 ...........................C TGTTTAGCGATATTTTCTGCGAGAGCACTCGT 1645770 28 100.0 32 ............................ TAATCCGTTTGGCTGCCGTTTTGTCGAGTTTT 1645710 28 92.9 32 ...........G...............T CGCATCCATTGGATAGGCAGAAGCCGCCAAAC 1645650 28 96.4 32 ...........G................ CTCGTGGTTCAAAAGCAGGCCGGATAGATTGG 1645590 28 92.9 33 ...........G...............C CTTGGGGCCAACACTATCTGCCGGTGCATCAAA 1645529 28 92.9 33 ...........G...............C AAAGAATCAGGCACCACCAAAACCCCATCACTA 1645468 28 92.9 32 ...........G...............T CGCTTGCGCTCTAGCGCTTGGGGTGCCTTTTA 1645408 28 96.4 32 ...........G................ AGTCCACCGCCTATCCGTGAGTTTTTCTATCA 1645348 28 96.4 32 ...........G................ AGTCCACCGCCTATCCGTGAGTTTTTCTATCA 1645288 28 96.4 32 ...........G................ GTTGCACCACCTTCCACCAACCTGTCACGCGC 1645228 28 100.0 32 ............................ GCTTACCGCATTGCTCAAAGAAGCGGTCTTGC 1645168 28 100.0 32 ............................ TGGTTTGTTCCTGCGATATAGCCAAATCCGAT 1645108 28 96.4 32 ...........................C ATCCCTTACCGGCGTGGTGGTGAGTTCCACCC 1645048 28 92.9 0 .........................T.T | ========== ====== ====== ====== ============================ ================================= ================== 44 28 97.1 32 GTGTTCCCCGCACAGCGGGGATGATCCG # Left flank : GGAACGGGGTATGTGCCGGACGATTTTTCTGAGGAGCCGCCATTTTGATGGTTTTGGTTTTAACAACCTGCCCGGCAGGATTGCGCGGCCACTTGACGAGGTGGCTACTTGAGATTGCGCCTGGGGTTTACGTTGGGCGTCCAAGCGCTCGGGTGCGGGATGCATTGTGGGAGCGGACTATGGAAATGGTCAGCGGAGGTCAAGCGATCATGGTAGAGAATGCGATGAATGAGCAAGGCTTGCGTTTTCGGGTTCATGAGCACTCTTGGGAGCCGGTGGACATGGATGGCGTACAGCTTGTGCGCCGTCCCAAAAAGCCCTCGGGAAAATCCCGCCTGAAACCTGGGTGGAGCACTGCCAGCAAGATGCGCATGGCAAAACGAAGAAAACGCTCGTCATAGTCCGCAGTGACGCGCGCCAGTGACAAACAGCTTTCGTAGCTATATTTACGACTGACTAAAATACGGTTAGTTTTTAGGTAAAATACCTAGACGATAAGA # Right flank : TAGCTATGGTAAATGGCGTGAAGCAAGCAGCGATTGATGTGTTCAACCTTGGGAAGGCGATGTGGAGCCGCAGTCCCGAGCAAGGCACTGTTGCTGCTATGTTCGCCGAGTTTGGTGACTTTAGTGCCGTGGCGTTTGAACTTGTCAACTCTCGGTATCCAGAGGGGATGACTCGAGACGAAATCTCGGCGGCAAGAGCGGCCGCTGAAAATGGCGGTTTTAGAGGGGCGAACGACTATTTTAGAGAATTGCTAGAAATTTAGTCGATTTAGTCGGCATCGCTAACCCACGCGCACCGCGTGGGTTTTTTCATACCCACATGGTTTTCCGTCTACGCGGACGGTATAAACGCGGTCCAAAAATGTTATCGACACTCCTGAATGGAGGAAAAAGTGTTCCCCGTACAGCGGGGATGATTCCTGGGGAGCAGAAGTATCCAAAGCGCTTTGGAAGGAGTTGAGCCTAAAGCTGGAAAGAAGCTATATCGCACATCCACCAAC # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.38, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1790222-1789546 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT706985.1 Propionimicrobium sp. Marseille-P3275 strain Marseille-P3275T chromosome contig00001 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 1790221 36 100.0 28 .................................... TCATGAAGCCCTATGCACTCACGCCCAA 1790157 36 100.0 28 .................................... GCTGGCAGCGTTCCTCTAGCCAATCCGC 1790093 36 100.0 28 .................................... CGCGTTTGCCCCTGAATGGCGAGATGGG 1790029 36 100.0 28 .................................... CGCGCCACGTTCGGCACCTCCACACCCC 1789965 36 100.0 28 .................................... TCCAATTGGCAGCGGGGTCTAGACCTTG 1789901 36 100.0 28 .................................... GCAAACACCGCCCGCCAACCAGCAGACT 1789837 36 100.0 28 .................................... TCACCCTCGATCTCGATGCGCCGATTAC 1789773 36 100.0 28 .................................... TGATCCGCTCGACGACCCGGCAGTGGTA 1789709 36 100.0 28 .................................... CTTGGACAGACGGTAACTCGCGAAAAGG 1789645 36 100.0 28 .................................... TAAACCGGGCAGCGGCAGACTATTTTAA 1789581 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 11 36 100.0 28 GCTGGGAATCAGTTCTACTTCCCTTTGATAGACTTC # Left flank : TGGCGTCAACGGCACTAAAGAGGTACGTGCCACGCTCACCTACACGGACGGCGTGGAATCTGGGCGCTCAGTACTGCGCGAAACAGTCACTAAGAACCCGGTGACCGAAGAAAAACTGGTCGGCACCATGGTCATCGCGGGTATGGCTGGCCACACAGAAAGAATGCAATGGATGAGCGACGCTGGCATTTCACCCTCCGATTTCGAGGCCGCCAACATTCTGATTTTCCGCGAATCCGGCTGGAACCCCACCTCAGTTAATGCCTCAAGCGGTGCTTGCGGTCTCGTCCAGGCTTTGCCGTGCTCTAAGATCGGCGACAACTGGTCCGACCCAGTAACCGCCCTTAGATGGGGCAATAACTACGTACTTAATCGGTATGGGGGCTGGCGCCAAGCCCTCGACCACTCCTACCAGTTCAACTGGTACTAGAGTTTACGGAACTGGTTAGGCGGACTCACCTTCTGGGCGCCTGACCATAGCATGTCGCTCATCTTTTGCC # Right flank : AGAGGGAAGTAATTTCCCCTTGGCAACACCGAGATATCGGCGTTTTTTCGTTAAAAAAGCAGTAGCTGTGTTGGTTCAGTTGAGTTAGGTATCTCGGTTGCGTTGGAAAATCTGACGGTATTCGCCCATTGTCGATCAGTAACGTGCAAGATCCGTATTTCTCCTTTTGGAGGAACTTGGGATTTGATTCCGTTGACTTCTCTCGTTGAGAGCACTCCGCTGGGGGAGTACTTGGCGTAAACGCTGAACTGAGCGAAAATGAAACCGTTGTCGAGGAGCGTGTTACGGAACTCTTGATAGTTACGCCGCTCCGCAGCAGTTTTAGTCGGCAAATCAAACATCACTAGGCACCACATGGGATCGTTAGCCATTGGAAGCGCCTAGCCAGTGAGGAACCTGCAGCCTATCGATTTCGCCTTCTGCATACTGTCCAAAGTTCTGGGCTAGTTCACTGAAAGCTGAACTAATTGTTCGTCCATCCTCCAAAAATTTCCTGTCTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGGGAATCAGTTCTACTTCCCTTTGATAGACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //