Array 1 1478943-1475494 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007536.1 Nitrososphaera viennensis EN76 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1478942 37 100.0 36 ..................................... ATGTACTGGACTCCCTTGTCCGCCCTGGTCCTTTCA 1478869 37 100.0 36 ..................................... ATGAAATCAGAAGTAAGGGTAGAATCCCCTCCAGCT 1478796 37 100.0 35 ..................................... ACACTTACCCTAGAGCTAACTCGTAAATTATTTGA 1478724 37 100.0 35 ..................................... GGCATAAACCTACTGGAAACGTCTTTCGTAGCCCT 1478652 37 100.0 37 ..................................... AGGGATACCAACGACGTCCACGAGCTGGCCGAAATAT 1478578 37 100.0 35 ..................................... AACAGAAGCCAGTTCTCTGCATATTCGGTGATCTC 1478506 37 100.0 37 ..................................... TCGCAAGCCGTCAATCACCGACAAGAAAACGATGTAT 1478432 37 100.0 37 ..................................... GGCTTACTATGTTGTAAGGGTGGAAAATATACAGAAG 1478358 37 100.0 36 ..................................... TTTATAGAATAAATTAGGTGATCTTCACCTACTAGT 1478285 37 100.0 35 ..................................... GTGCTACTCTTACTGGTTGGCAAGTGTTTTGAGAT 1478213 37 100.0 35 ..................................... TCCTAACTGTATGTACAAGGTGAGAATCCAGAGAG 1478141 37 100.0 36 ..................................... CATGCCGACGTAGGGATAAAGGACGAAAAAACGGGT 1478068 37 100.0 36 ..................................... TCATATTACAAAATAAAAGGAGAGGGAAAAAAGATT 1477995 37 100.0 36 ..................................... TCCTTGTCGGCACCACGCCGTGGTAGTCGAAGATGT 1477922 37 100.0 38 ..................................... TTGAAACTCTTGGCATGTATGATTACCCGCTCTAGCAT 1477847 37 100.0 36 ..................................... CAACCTAAAGGCAATAATCGAGTATATGGTAAGGGA 1477774 37 100.0 36 ..................................... TAGAGCTAAGTCCTGCAGGAGTAGGCTCTGGAGGAG 1477701 37 100.0 34 ..................................... CGCCAACGTGCCAAGCGTGTCTTAATTTTGATTC 1477630 37 100.0 35 ..................................... CAAAGGATACTACCATAGCCGTCAAGGACTTTCTT 1477558 37 100.0 36 ..................................... TCGTTAACCACCTCTCTCCCGGTTTTTGGCCCTTTA 1477485 37 100.0 34 ..................................... CGCTTGCAGGCGTGTTTATGCCTAAGGTCAAGAT 1477414 37 100.0 34 ..................................... CTTTAATGCAGTAGGCGACGGCGCTATAACGATC 1477343 37 100.0 36 ..................................... TCTACCAGTGAGAGGGTGGGCATCATACGTGATAGA 1477270 37 100.0 37 ..................................... ATCCTCTCATTTGAGTATGCGCGTGACTGGTCAAATG 1477196 37 100.0 34 ..................................... CTCTGTCGCTATCCGAAGTGACTGAGAGATATAC 1477125 37 100.0 35 ..................................... TCTATTGCAGTCACTAGGTTAGGCTCGATATCCCG 1477053 37 100.0 37 ..................................... TGACGTCATTCTTCCAGTCAACACGACGTTTGCATGC 1476979 37 100.0 35 ..................................... TCTAGTCCGTAGTCGAATGCTGGATGACCATAGAG 1476907 37 100.0 34 ..................................... TGCGGCTGGTTGCAGGGCAAACAATTTCACGTAC 1476836 37 100.0 34 ..................................... TAGACTAGCGGGCCTGTTCCACCTGACAGATGAC 1476765 37 100.0 35 ..................................... TCGAAAGCTGCTGGTCGCACAGGTCCTTGCCTATC 1476693 37 100.0 37 ..................................... GTAGATACCACCACTGACTCGGTGGCTTCTACTTGGG 1476619 37 100.0 35 ..................................... TTGATACTTCCTTCCAGGAAAAGATAGCCTCCGTC 1476547 37 100.0 37 ..................................... CTAAGGAATACGATTATGTAATAGGCACACTCTGGGA 1476473 37 100.0 37 ..................................... TTTTTGTTGTCGTCGGCCTCCTCATCGTCGTCGTTGT 1476399 37 100.0 35 ..................................... GCCTTGATCAGTATGTAGCTGCCGGGTCCGTAGCA 1476327 37 100.0 37 ..................................... ATGAAGCCAAGGTCGGCATAGTCGTTCATAACCAAGC 1476253 37 100.0 35 ..................................... TGTCATTGAGATTTCGTTGGATTCTGTGGTATGGA 1476181 37 100.0 35 ..................................... TAGAATCACTTTCTGTTATGTTTCCAAATATCGAA 1476109 37 100.0 37 ..................................... AATTTCACGCCGTACTCATTAAGCTGGAAATTGGCAT 1476035 37 100.0 34 ..................................... TTGCATAATAGTTGGTACCGTCGAGTGTCATCTT 1475964 37 100.0 36 ..................................... CTGAACTTACAGCTCTGAAGGGTGCTTTTGAACAGG 1475891 37 100.0 34 ..................................... GTCATTCTTATCCCTCTTCCCATAGAAATGTTGA 1475820 37 100.0 36 ..................................... TACCCATACTTGCGGCAGATAGCCCTGAACCAGTCT 1475747 37 100.0 34 ..................................... TTTCTATTTTCAAAGCCTAATACCTCGAGTATTG 1475676 37 100.0 36 ..................................... TTTCAAAAGAGTACAGCTCACCTATTTCCAGTTGTT 1475603 37 100.0 36 ..................................... CACCAAACAAACGAATAGTTCTTTCTTTCTCCTTAA 1475530 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 48 37 100.0 36 GTCTGAAAGACAAATCCATTAAAACAAGGATTGAAAC # Left flank : TCGGCAGAGGGAAGAAACTGGTCGCTTTCCAGCTCTACTCCATGCGCCTTGGACTATCCGGCAAGATAGATGAAGCTTATGAAACCGCCAGCGAGATCGTGCTGGTCGAAAGGAAGTATTCTGATTTTACTGTGATTACCGACACTTTGAAAACGCAGGTGGGCCTGTTATCTATTCTGCTAGAAGAGAACCGTAACAAGCGGGTTGCCCGCGCTTTTGTTGTGTTCCAAAAATCCCAGCGAGTGGTAAAAGAGATTGAATTGACCCAGGGATTGAAAGATTTTGCGCTTCAAAAGCTAGAATCCGTAAAGCAGATACTGGCAAGTGGGATTAGCCCGGACGTGAAATATAGCAGCAAATGCCTTGACTGCACCTACAAGAAGGTGTGTCCCACTGGATCTTTATATAGGGTTCCATAAAAATGCAGGACGGTGAGGAAAGACAGCCTTTTGGGGTCTGTAGACTGAATTTTACGCACAAAACCGGGTGTCCGGAGGGCT # Right flank : CTAGACCTTTTTTTGCATCCTTATCGTGAGCACGCCGTTTCTGTACTTGTAGTCGGATATGCCCATTTCAGCAGCCGTCGACATGTCAAGCTGCACGTCCCTTGCAAAGTTCTGGCCGCCCTTTATCTTTAGCATGCCTGCCGACAGCCGGACATCTATCTGGTCCTCCGGGCCGGGCACCTCTGCCACGAACACCATCGCCCCGTCGTTGTTCTTTATGAGGTCATAGACCCAGTCCTTCTGTTCCACGTTGCGGGGCATTGCGACCTTTTGTTCGGCCGGGCTAGACATCTTGCGGATCTCGCGCACCCAGTAGATGACGAACCCCGCCGCGATTGTGATGAGGATAAAGCTGGCGCCGTTCTGGCCGCCTCTTGCCGTCATGACGTACATGGCGCCGACAAACATCAAGGCCAGAAGTGGGACTATAAAGCCGACCGAGCGCCCGGTGGAATATTTCTTTGTGTATTTAGCTAATCCAGCTCACCCCTCTCCCGGCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAAAGACAAATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 2 2174924-2177004 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007536.1 Nitrososphaera viennensis EN76 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2174924 30 100.0 36 .............................. CAGGCTAAGGATGCGTTGTCGGAGTGGAACATAGAG 2174990 30 100.0 36 .............................. GAAGTACCAGGTATTGAGAGAGATGGTAGAAGTAGA 2175056 30 100.0 33 .............................. TACGGCAATTCGGCAAGGATAGCCCACAGGCTA 2175119 30 100.0 36 .............................. TCAGCAATCATCCCCCGGATGTTGCCGTTAATCATG 2175185 30 100.0 37 .............................. TAGTTGGCGCCGCTGTCGTTGCAGCCGTCGCATCCGT 2175252 30 100.0 37 .............................. CAGTTAGCAGACTATCAATACAACATCTGGCAGTCGG 2175319 30 100.0 37 .............................. ACAATCCACAGTTAGGTACAGGCATACCATCAAGTGT 2175386 30 100.0 37 .............................. GTTTGGGTACGGCAGGGATTTTGTCTTTGCCCTTTAG 2175453 30 100.0 37 .............................. TAAAGAGACCGAGGCCGATGATTCCAACCACTATGCC 2175520 30 100.0 36 .............................. CTTTGAGACGACCTTCCGCCTTCCATAGTCGTATTT 2175586 30 100.0 36 .............................. AATATGATAAAGGATAGGTTATACGCTCCATGTCCT 2175652 30 100.0 36 .............................. TTGTAAAAGGAGTGCCAAGAACTACGTTTTTGATTG 2175718 30 100.0 36 .............................. AGCAGGGAGTTTCTCCCGTTCTCTCATCATTACCCA 2175784 30 100.0 35 .............................. TAAAGCGCGCCGTGGCGCGTGCCGCTCGCCTCCAC 2175849 30 100.0 37 .............................. CCCCCTTACTTGCCGTTGCTCAGTGCGTTCAACGCTG 2175916 30 100.0 36 .............................. CTGTTAACAATTTGGATGTCAAGCCCCACATACTTA 2175982 30 100.0 36 .............................. GCAGCAGGTGCCGGCAATCCGGACGCAATAATGAGT 2176048 30 100.0 36 .............................. CCGCTTGACGACGACTTTGAAGACGACGACGCTCCC 2176114 30 100.0 36 .............................. AAAAAGTTAAAGAATTGGCAAAAAGCGTGCCTGCTC 2176180 30 100.0 36 .............................. ATTGTTGCAGTAAAGATATGGCCTATTTGCGCGCTA 2176246 30 100.0 36 .............................. AATATCCTTGGGAAATCACGTTGATGTCTAGCCATC 2176312 30 100.0 36 .............................. AGCACCATGAAAGGAATCTTGCGCTTGCGTTTTTTG 2176378 30 100.0 36 .............................. TAATTTGGCTCTCTGAAAGACCGCCCCACATGCTCT 2176444 30 100.0 36 .............................. GGTAGACAAATACGGTAATGGGGTGGGCCTGGTAAA 2176510 30 100.0 36 .............................. GGTTATCAGGACCATCAACAGCCCAAGCACAATTAA 2176576 30 100.0 37 .............................. GACGTTCCACCGCCGCCAGTGGAAGGCGGGCTGCCGC 2176643 30 100.0 37 .............................. ATCTCCAAACCAAGTAGTAAATGCGTATGGTATCAAG 2176710 30 100.0 35 .............................. CTTCAACGCTCAACGAGGATAACCCGATGTCGCTC 2176775 30 100.0 37 .............................. ACCGGGCCATGCCTTGTTTTACTCGTCCGCATGGCTC 2176842 30 100.0 37 .............................. AGGTCTATCTTGCAACCGGCAAAAAGATCGCAATAGA 2176909 30 100.0 36 .............................. AGTTCATGAGAGCACTGCAGGTGGTATTTACCTAGA 2176975 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 32 30 100.0 36 GTTTGAATCGCACTATTATAGGATTGAAAG # Left flank : TACCACAATCAACAATGCTCGCCTGAAACGCAATATCAGCTACCAACGACTGATACGGATAGAGTGCTTTAAACTCGTAAAACATCTTCTGGGCGAGAAGGATTACCGGGGATTGAGGAGCAAGTAGCTGGACAGGATGTATGCCATTATAGTATACGACGTCGGAGTGGAAAGAATCGATGCAGTACGCCACATTCTGAAAAAGTACCTGACATGGATTCAGAATTCCGCGTTTGAGGGAGAAATAACTACGGGTAAACTAGAAGAGGTTCGAATTTTGATTGCAAATGTAATAGACAAGGAAAAGGATTCCGTTGTAGTCTACTCTATTAACAATCCGGCGTGGATTGAGAAGAAAACATGGGGAAGAGATAAAGGAACCACGGATAACGTTCTATGACAGAAGGCAGTCCGCATTTATAAAGAAATTGCAGCATCGGAGGCTGACCCAAATGTTGATAAATCAAGAGAATGTATGAGAAGGTGCCCAAAATTTGGGG # Right flank : GTTACAGAGGGTTTGGTTACCGACGTATCCGCCACGGATGATGGTCTTGATTTTTCAAGTAACGAAAGTCTCATGTGACGAGACTCGTCACAGAAGAGCTGTTCCGACCTTTTTACAATGAGCAAATTGAATACAACGTGTAAAACTATATAATTTGCCTGCGGTTATTAACCCGATATGTCCGAAATCAACCGTTTGAGTTCGGACTCGATATCTGCAGAATCCGGGAACCACCGGGCCCGCTAAATGTATAACCACCATCGGACGATGGAATATTGCTCAAATGATGACCTGTTATCCAAGGGAGCGATGAGGCGATGACCACCTTACGACGGTCTGATGAGTGCACTATGCAACTGTATCATGATGCGCGCAGTCGCGCCCCAGATGACGTTTCCCCTGTACGTGAACCTGTACGCGTTCTTTGAAAGGTGAAAGTGCTCGGTGTCCGGCTCCATCGTTTCAAGCGTCTCTATCAGGGGGGCGTCAAGCACCTCCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATCGCACTATTATAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA //