Array 1 2337977-2338493 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCFJ010000001.1 Saccharopolyspora hordei strain DSM 44065 Ga0197497_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2337977 29 100.0 32 ............................. GCGCACCGGGAAAAGGCAAGCTGATCAGGGGT 2338038 29 96.6 32 ............................C GGGCCAGCATCTCGCCGACGGCCTCTCTGTTC 2338099 29 96.6 32 ............................C CTGCGGGCGGTGCGAGATCTGGCTCGTGAGCA 2338160 29 96.6 32 ............................C GGATGCACGTCGCTGAACGTCGTCTGCACCGC 2338221 29 100.0 32 ............................. TACTCGCCGAGCTGGTCCCAGACTTCGTAGAA 2338282 29 100.0 32 ............................. ACGGATCCGAGGCCGGTCAGGGCCGCGGTGGT 2338343 29 100.0 32 ............................. CTCGCCCACCTCCGTGAGGGCGGGCACCACCG 2338404 29 96.6 32 ....................A........ GTGCTGGCAGCGATCCTGCCGGCAGCCGCGGT 2338465 29 86.2 0 ........................CG.AC | ========== ====== ====== ====== ============================= ================================ ================== 9 29 97.0 32 CTGCTCTCCACGCACGTGGAGGTGATCCG # Left flank : CGGGGCATCTGTCGTTTCGAGCGGTACCGGGAGCACAGGCTGCCAGCGTTGCGGCGTCCCGCGTTCGAGGACCGCTTGTCGGCTTCCGTCCCGCCGATCACCCGGAGCGTGCCGACCTGGCGAGCGCGATGCGCGATGGCCGACGCTCTTCGCGGCCGGCTGCCACGACGTCGGTCGGGGGGATGGCGAGAGGATCGTCCTCACCGATCGCGGATGCTCGAGACCATGGGAGTGCTTGGGCTATCGCAAAAGGGTTGTCCATCGATCTCGACGCCATGTCCATGGTGGCATTCCTGACACAGCCCAGCCAGGATCGGACCGTGCGCCAGGCGACCGGAGTCGTCCGGAGCGGTACTGCACACGGGCTAGGGGAGCGAGGAACGGTGCGAGCACCTCTTCATCACATGATGGAGTCGGGAGAGACGTCACAACCACGTGCCACCCGTCGAGAACCGCGCCAAAACGAGCAACGCCGTCGATGAAACCCCAGGTCACGAAGT # Right flank : CATCTAGGTGCTCGGCGCGGCCTGGACGATGACACGTGGCCCGGAGACGCTCTTCATCGAGCACAGGGATGCACCAGGATGACTCATGTTGATCTGTTCGGGTGATCGTGTTCACGGGACTGGCGGTTCTGTCAGGGGGGACCGCTAGCGTGCGCTCGCGTTCGAAATGATCTACGTGCTCGTGATGGGGCCCGGCGTCGTGGTCGTGGACTTGCGTTTGTGGGGGAAGCAGCGCGGTCTTGGTGGCGGAATCCTGTACCGGTTGGTGTGCCACGGATTGTCTGCTGCGGCCGCGGTTCGGGTGTTGTGGCGAGATGTGCTTTCACTCCGTTTGCGAGAAAGGCTGGCCGCGGGGTTGGGCTTGTCAGAGGCCGAGGCGTGTGCGGTGCTGGAGTTGTGGGCCTCGTTGCACGATGTCGGAAAACTGACGCCGTCGTTCCGAAGGCAAGGACAGGTGCCGCCAGGGTGCGGACGATGATTCGTCAGACACGAACGTCGCG # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCTCCACGCACGTGGAGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2902111-2900878 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCFJ010000001.1 Saccharopolyspora hordei strain DSM 44065 Ga0197497_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================================================================================================================================================================== ================== 2902110 29 75.9 197 TC.A...T...G..............C.G AGTCACGTATGGCTTGGTGCCGACGAGGTGAAGTAGGCCCCGCATTGCGGGGATCAAAGCCGCGCCAACGTGCGCGCGGCGTTCAGTGACCGTAGCCATGCAGCGATCCGACAAGACGCCACGACATGACCCCACGAAGTCATCCCGGACAACACGGGAAGACCGTCGGGGCTAGGTAAATGTGCAGGTCAAGAAGT 2901884 29 96.6 32 ............................A ACCCGGCGCTGGTGCGCACGACCTGCGGCAGC 2901823 29 96.6 32 ............................G CCCAGCGAGCGGACCTCGTCCCGCAAGGACGA 2901762 29 100.0 32 ............................. GCGAGCGCCGCGAGCACGCCGATCATCCTGAT 2901701 29 100.0 32 ............................. CTCGCCCGACGCCGCCGCGCCGACGCCATCCG 2901640 29 96.6 32 ............................G TCGGCCCCCAGGTGATCTCCAGGCTCACCGCC 2901579 29 100.0 32 ............................. GACCAGTGGCGGCGACGCACGAGGCACCCCGA 2901518 29 96.6 33 ............................A GCAGCGGGGCGAATCCGTTCCACCTCTCGTGTG 2901456 29 96.6 32 ............................T CCGGCCTGCGTGTTGTCGATCAGGTTTTCCTT 2901395 29 100.0 32 ............................. GAGCCAGCGCAGCAGCGCCGCTGCGACCAGCG 2901334 29 100.0 32 ............................. GAGGTCAGGCCGCGGCCGCCGGGACGGCCGAA 2901273 29 96.6 32 ............................G CCGAGGGGCCGTCCTCGGATTCCGCCTGGTCT 2901212 29 100.0 32 ............................. TGACCGCCACGGCAGGGGCCCGCCCGGCAAGG 2901151 29 100.0 33 ............................. GCCGACCGGCATGTGGCGGACCATGCCGAGGCT 2901089 29 100.0 32 ............................. TCCTGGCCGCCCTTGGGGTCGATCACCCAAAG 2901028 29 100.0 32 ............................. AGGATGTTCCCGCTGCGGATCTCGAACTCGGC 2900967 29 96.6 32 ...........G................. GGCCACCTGACCGCGGTGGATGCGCTGACCCG 2900906 29 75.9 0 ..........TG...........A.CCGT | ========== ====== ====== ====== ============================= ===================================================================================================================================================================================================== ================== 18 29 96.0 42 GTCGGCCCCGCACACGCGGGGATGGTTCC # Left flank : AGGACCTCCGGCCACCTGGTCGAGCCAGACCTGCGTCGAGGGCGCCACGTAGCAGTCCCACAACAGCTCACCTACCGCCGCCGCGTCGAGCATGTGCGACACCAGCAAGTTCATCCGTCCGCCAGCGCGCTCCGGCGACTTCCCCCACAACACCCCCAACCACCGGAGCACCTCCGGACTCAAGCCCTCCACAAGACCCCCTCGGAAGCGGACGTCATCGGCAAGATCGAACCGTAGCCATGCCCACCGACAGTCACCGGTGCTCCGCCTAGAAGGCGGCTAGCAGCACTCGGTTCCCGTCGCGGCGAGACACCTCCCACGTACGCCGCTTACTTACTCCTAACTGCTGGTGACAAGGACAGGACGGAGAGTACATGCCCACAGTGTCTCTTTCAACAGGCATGTATGAGGAAACGGCCAAGTATGACGCCGCGCGACCACCCACCCCCGAGCCCAAGGTGGTCTCAGCTGCTCCTCATGGTTGAATTTGGAGCGAGCAT # Right flank : CATGAGCGGTGTATGCGCGCGCCGACTTTCGGCAAAGGCCCATGTCCCGGATTGACCGCCGTCAACGGCGCCGAGCCGGCGTTTCAGGGACGTCTCGGGACATGACGCCCTTCCTGTCCAAGTACCGATTCGACAGGAGTTTTGGCTAGCTGGTCAGCACGCAGGGCCACGTGTCCCACAGAAGTGTCCCATGCGGGAAACCGTGGGACGGTGGGACAGCAACGGCTCTCCGGTCCGTTCGAGGGCGAGCCGTGTGGTTAGGGTGCAACTCGCCCATCGGACACGCGCGCTATCCCTACGGCCCAGGGTCACGGCGGTTTCGAGAGTCCGTGACTCTGGGTCGTAGGGCATTTCCAGGCCCATGCGCGCGTAGAGCTCCTGCAGCTTGTGCGGGTCGGCTCGGTCAAGGGCCCGCCCGACTGGTCCAGCGACCGAAGAAGGCGCACCCGGTGTAGCGAGGGTTCTTCGAGACTGTCAGCGAACCAGATACAGCGGCTCAC # Questionable array : NO Score: 4.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.92, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACACGCGGGGATGGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2911936-2913001 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCFJ010000001.1 Saccharopolyspora hordei strain DSM 44065 Ga0197497_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2911936 29 100.0 32 ............................. CCCGATGAGGGCATCCCAGGAGTGCTCGCTGG 2911997 29 100.0 32 ............................. GCGGACCTCATGCCCGACGTCCCCGAGGACTA 2912058 29 100.0 32 ............................. AGGTCGTTCTCCCGCTCCCTCAGCGGACTCCG 2912119 29 100.0 32 ............................. GCTCCGCCGAGCGCGGCCCCGATCTCAGCCAG 2912180 29 100.0 32 ............................. CACGGCCACCACGGAGGAGGGGCCCGGACCTT 2912241 29 96.6 32 ............................G TCGGTGGTCCGCACCCGCGCTTCGGCCGACAG 2912302 29 100.0 32 ............................. AGCCCCCGCATCGGCACATGTTCCTTGGTCGG 2912363 29 100.0 31 ............................. TCGGGGCCGTGGGTCGCCGCGGCCTTGCTGC 2912423 29 100.0 32 ............................. GTGAGGCTCATCGGGACATCACCTCAGAGAAC 2912484 29 100.0 32 ............................. CTGCTGTGGCGGGTGGTCGGCTACGTCGGGTC 2912545 29 100.0 33 ............................. TCGCCCCCTACCAGCGCATTGCCAAGGAGATCC 2912607 29 100.0 32 ............................. CCGTAAGTCAGCGCGATGCTCTGGCAGCGCTC 2912668 29 100.0 32 ............................. CCGCTGCTGGCGATGGGCCCGGCCATTCGCGA 2912729 29 96.6 32 ............................T GGGACCTCCCAACGGGTGTTGGGCCGGAGCTG 2912790 29 96.6 32 ..............G.............. TGGGACTCCGCAGGTCTCCGGCAGTACTCGAG 2912851 29 93.1 32 ................T......C..... GACATGGTGCTCGGCACCTCCAAGTACAAGCA 2912912 29 100.0 31 ............................. CGGTCGTGTCCGGGGCATGGCCCAGTTCCAC 2912972 29 79.3 0 .....TT.......G....AA......T. | C [2912997] ========== ====== ====== ====== ============================= ================================= ================== 18 29 97.9 32 CTCGGCCCCGCACACGCGGGGATGGTTCC # Left flank : GCCCTTCTCGGGCATCCCGACGTCGAGGACGCCGAACCTGACACCAACCGGATCTGGGACGAACGACGCGATCCCCTACCCGGGGCCTTGAACTACGCAGACCCCACCGACCCGCACCCCACCGCTCCGCATGATCGGGGCAGCGAGCACATCTCCATCATCGGACCCGAGACCACCACATCTGACCCGACTCCAGGCGCCTCATGACCGTCATCGTCCTCATCGCCGCCCCTGAAGGACTACGCGGCCACCTGACTCGATGGATGGTCGAGGTCAACGCCGGCGTCTTCGTCGGCAACCCCAGTCGACGCGTCCGAGACCGCCTTTGGGACGTCCTCGCTACCCGCATAGGGGACGGCCAAGCAGTACTCGTCGAGCCCATGAACAACGAGCAAGGTTGGACCGTTCGCACCGCGGGACGCGACCGCTGGCATCCCGTCGACTACGACGGACTGATTCTCTCCGCCCGTCCTCGCCGCTGAAAGCCCAGGTCAACAAGT # Right flank : CTGATCAGTGGGTAGTGTGTTGACAGGAGTGCTCGGTCATGAGCACGCAGGGTTGCCTTCTCGGCCGCTTCGGTGGCGTCGACGCCGAAATGCTCTCTTCTTCGTCACAACCGTCGAAGTCCTCGGAGGACGGCTTGCATGGTCATGGGCGATGGTGTCGGAAACATCCTGATCGTGGGCGTGCTCAGTTGCGGTCGATCTTGGAGAACCCTCGCTACACCGGGTGCGCCTTCTTCGGTCGCTGGACCAGGCAGGAGACCTTGCTCGACCCTGATGACGTCGCAGCCGGGCATGTGGTCCGGTTCCACCGGGCCGGTAAGGAATCAGTGGTGCGCTCGCGGAAGCCGGCGCACCCGGCGATCGTGTCGGTGGAGACGTTCGTCGAGGTGCAGTTGCGGCGTCGGGCTCGGACCGCGGGTGGACTGGCAGCGAGTCGGAAACTGGAGCGTGGGCCGAAGAAGACGACCAAGCGTGCCTACCCGCTCGTGACCAGCGGACCT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGGCCCCGCACACGCGGGGATGGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //