Array 1 85206-86494 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALCI010000009.1 Providencia sp. M-8 NODE_9_length_146598_cov_80.3426, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 85206 28 100.0 32 ............................ TTGGCCGACCGTCAACCCTTCTTCAACCGTTG 85266 28 100.0 32 ............................ TTAATGATGTTAAGTCATTTTTCATTTGTGAC 85326 28 100.0 32 ............................ TATGATGATACTACATTATGCGACTATGTTTC 85386 28 100.0 32 ............................ AATAGTTTCCGCATGCTGAGCAATAGGACTTA 85446 28 100.0 32 ............................ GCCAGCACGCTGATTTAGTTAGTGAACAAAAA 85506 28 100.0 32 ............................ TTGAAAAACTCAAGGTAAGGCACAGGTATAAC 85566 28 100.0 32 ............................ CTAATTCATCCATAAAAGCTTTGAATTGCAAC 85626 28 100.0 32 ............................ TGATTTATCCATACCGACAACAAAGTCAACAT 85686 28 100.0 32 ............................ TGACCAAATCGCCACTGATAATAGCGGTTGCA 85746 28 100.0 32 ............................ GTTTTAGCCAACATCATGAAGAAAATAAAAAG 85806 28 100.0 32 ............................ ACAAGTTGTGTGGCAAGTCCGCTTTCAATAAT 85866 28 100.0 32 ............................ TTTAGGCGAATATTGGGAATCTATTGGCGGCA 85926 28 100.0 32 ............................ CATTCCGTTAGCGTTAATTCAATAGGGTCTTT 85986 28 100.0 32 ............................ TTTTCGCCTCGGTCGCCTTTTTCTCCCTTTTC 86046 28 100.0 33 ............................ ATATACCACTATACAGAAAGAAAAATTTCCCTT 86107 28 100.0 32 ............................ TAACATTTCATCGTAGAGAGAATGTTTATACA 86167 28 100.0 32 ............................ TAACTCAAGGGACATAAACACCGCACCTAAAA 86227 28 100.0 32 ............................ TGTGGGGCTTTTTTTTCCCAAGTCATATAAAA 86287 28 100.0 32 ............................ TTTTTAGTGCCAGTTCTGCCTTTCTTCTTACC 86347 28 100.0 32 ............................ CTAGCCTTTAACATTGCATCTGCCATCTTGTA 86407 28 100.0 32 ............................ TTTACGCCGAGGAATTGATGGGAAATTGGGGG 86467 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 22 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTGAAGCTAAGCAAGGTTTACAATTACAAGAAATTGATAAATTAGATTTTTTAGCTGATACGCGCTCGATTCAAAATGCGGCCCGCAAAAGTGAGTTGTTAGAAACTAACTGGACTGGCACCACCACAGATTATTATAAAGAAAAAGCGATGTTTGAAGCCTCACAAAGTATTTTTAAAGACTTAAACAGCATGTCACTTTTCGGCAGCCGTTAATTATTTAATACTCTTTTTACTCACCGCGCTTTGGAGCCATTCAAGCGCGGTTTTTTGTTTGGGGGTTTTTAGTCACCACAAAAAGGGGATTTGAGTTTATTATTGTGTCTTTTTTATATTGCATAAATTTGCTTTTGTTTTACCCTTATTTGACCTTTTATTTTTGCTCTTTAAAAATCCGCTGATTTAACAATTAGTTATAGGATTCACTAAAAACAAAGGTATTTTTTGTATTTTAAAGCTAGTCAGTTGTTTTTATTTGTTTTATTCTGTTTTTGTTATA # Right flank : AGCGCTATCGATTTTATGTATAAAGATAATCAGGTTTATGGTCACAAGGATGGTATAAAAAGAGCATCAGTGAGTATTTTTTTACTGGTCATTCTGTGAAACCCTTCGCAAATTTGGCTTTGGTTGAAAACAAGGACTTGTTTCGTGGGATAAAGCTTATTCTAATAGATTGATTCAAAAATCTTATTATTTAAGGACAGAATCCAACTATTATGGACGATTTTTCACCAAGTGAATTAAAAACTATTTTACATTCGAAATGCGCCAATATGTATTACTTGGAACATTGCCGAGTTATGCAAAAAGACGGCCGTGTTCTTTATTTCACTGAAGCTAAAAACGAAAACCTCTATTTTAATATTCCAATCGCAAATACCACGGTCTTACTTCTGGGCACTGGAACCTCTATTACTCAAGCAGCAATGAGAATGTTATCTCAAGCAGGGGTATTAGTTGGCTTTTGTGGCGGCGGCGGTACACCGCTGTATATGTCTACCGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 95189-95638 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALCI010000009.1 Providencia sp. M-8 NODE_9_length_146598_cov_80.3426, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 95189 28 100.0 32 ............................ ATCGGCAATGCGTTGTTTGTAATCAACACAAG 95249 28 100.0 32 ............................ ATACGGATGCAAAGAAAGTATTACGCATGCCC 95309 28 100.0 32 ............................ AATCTAACGCCACAATCACCACATAGGATATT 95369 28 100.0 32 ............................ AATATCAGCAACAAATGGCCATGCAGTTTAAT 95429 28 100.0 32 ............................ GAAATCAATCACGCCACCGCCTAGACTATGAA 95489 28 100.0 32 ............................ GCATGGAAAGACCAGGAGGTTGAGGGGATAAT 95549 28 96.4 32 ........T................... TGTTAAACTGTTAGCCCCTAGCGCATCTGTTG 95609 28 78.6 0 ......T...GT......A..AG..... | TA [95629] ========== ====== ====== ====== ============================ ================================ ================== 8 28 96.9 32 GTTCACCGCCACACAGGCGGCTTAGAAA # Left flank : ATATTAAATCGATTCAGGCAATACCAGAGCAGCATGTTCAAGTCAGTTATATTCGAAAGCATGTAAAAGGGCTGAGCCGAATTGAAGCCGATATGCAGCAAAAAGCACGGTTATGGTCTGAAAAATCAGGGCAACCATTGGAACAGTGTTTGAAAACATTGTCTGAGAGTAAGCCAAAAGCGAACAATCGTTTGCCATTTATTTGGGTTGAAAGTTTACATGCCAGAGATAAGCAAGTCGAAAGCCGGCCTTTTCCTTTGTTTATAGAAAGGATAGAAGCTACACAAAAGCAAATTGGGGTGTTTAGTTGTTATGGTCTTAGTCAAGCAACTAGTGGCTCAGTTTGTTTAGCAACGGTTCCCCATTTTTGACCTTTGCTTTTTGCTCTTTTAAAATTAGTCAGTAAATCAGTAGGTTATAACTACCAGTAAATAAAAGGGTATTTTCCAATAAATACCCTTAATTGATTCTTATCACTTATTTTTATTTTAAAGTGCATC # Right flank : ACTGATCTATTTACTGCAGTCGGTATGTAGTACAGACGATACAATGGAATGTGATTTGCACTAAAAAGCAATTTGCATTACAGTGCAAATTATGATGAGGGTATATGTATACTGTAAAATATCATTCTGAGGCTGAAAAAGAAGCAAATGCACTGCCTTTAAAAATCAAGGTGAAATATGACCGCCTCATTAAAAAATTAGAGTTATCAGCTAATTATTTAAGAGAACCAGATACTAAATCATTGGGCGATGGATTGTTTGAGATAAGAACTATGGGAAGTGAAATAGCTAGGGGGTTATGGGTTTACCACAAAGATAAAACAATTTTTATGCTCAGGATCTTTATCAAAAAGTCACAAAGAACCCCAAAGTCTGAGTTTTATTTAGCGAGAAAACGTTTATTGGAGCTATTAAACGATGAAAACACATAAAGAGCTACATGATGAATGGATGAAAGATCCAGAATACCAAGCTGCTTATGAAGAAGAAATAAGAACTGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCACACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //