Array 1 12373-12736 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAQO01000002.1 Paenibacillus algorifonticola strain XJ259 Scaffold2_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 12373 32 100.0 35 ................................ TCTAAATCGGGGTTAACGGTGCTGTATTGATCAAC 12440 32 100.0 35 ................................ CACGTAAGCGTTACTTTGCTGTCTCCAGCAACACC 12507 32 100.0 34 ................................ TTAAGAGCCTTCGGCGCTTCCGGCAGCGCCACGT 12573 32 96.9 33 ..........A..................... CAGCTGGCACAATCGTCGGTAACGGCATGCTGG 12638 32 96.9 34 ..........A..................... GACAACCAATCTAAACTTGTCCTGGAGACTCGAT 12704 32 78.1 0 ............A....C.....A...TC.CG | A [12727] ========== ====== ====== ====== ================================ =================================== ================== 6 32 95.3 34 GTCGCACTCTGTGTGAGTGCGTGGATTGAAAC # Left flank : TCGGTGTCGCTTGCGCGGAAATTTCGGGGCTGTATCATCGCCTTGCGGCTGAGCAGGTGCCGGCAATTAGCGGGACAGAGCATGCGGAACGCATTAGCCAACAGATCGCGGAAATTCCGAATGAGGAGACGATTCGCGGCTGGCTGAAGCAAGTTGGTGGGCCATCCACAACGGCTGAGCTAGGTGTGAGCGACGAGCTGCTTGCCCGCAGTTTGAGCGAGGCTCATTTGGTGCGGCCTAATCGTTATACGCTGCTGAGAGCGTATAACGAAGGGGCAGGAAAGTAATGTTTTTTAGATGAAAAAGAGATTTGCGTCGCGGTGCGAATGTGAAGCTCCCATAAAAACCCTAGGAGATTCGCACCTCGAAATTTGTCGATTTATAGCTAAAATGAGTCGATTTTTTAAAAGTCAAGATATTTCTACGAACGTTTTAGTATTATTTTCTTGTGAGTTAGATAAATGAATGCCATATTGGTACCAATTTATCTATTTTTCGCT # Right flank : GTATGTAAGAGCACTATCCTAAAAGAGTAGGGGCACCTACGATATCTGCTCACAGTTCCATTATTAACAGCTCAAGAAGCCTTGGTATATAAGGCTTTTTTCTGTTTTTGTAACATTACTAAAATACATATTTTACTTCTCAAATAGGTGACACTATCTTTTTAAATTAGAAGCTCGCTGGAAGGTTTACATTTGGGCAATATGCCACATGGTTTTCGAATGATGTGCACTTTATTGTGTCGTTGGAGCTATTACACTGGTTGTTATACTAGGTTGTGTATACAAACGATAAGGGAGTATCAGGAACTTGGCGGACACAGAATCCGCTATTTAACCGGTTATAGGTTTATCGAGAATTAGGCGGACTCAGGAGCCGCTAATGCTTCGCCAATCGCCATTTTGACATGATTATGAGGGCAATAGCGGATCTCCTGTCCGCTTACGGGCTAAAATCGTATAAAAAGCTAAAATAGCGGAACCTCAGTCCTTCAAAAAAGGAA # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTGTGAGTGCGTGGATTGAAAC # Alternate repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 246839-247744 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ040778.1 Paenibacillus algorifonticola strain XJ259 Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 246839 33 97.0 36 ....................T............ CAATCTTTTGTCGCCAGCATCTCATATTCCCTGCAA 246908 33 97.0 34 ....................T............ TTGTCACCCGTCTCATTAAGTAGATCAATGACCA 246975 33 97.0 33 ....................T............ TTGGCCTACAACGTCAAAGTATTAGGCGAAGGT 247041 33 97.0 35 ....................T............ ATCGGGGTTTCGTAACCAGCTCAAAATCTGGTAAA 247109 33 97.0 34 ....................T............ AACGAGGTATGCATGGAATTGGATATGCTCAAGC 247176 33 100.0 35 ................................. TTGAAAACTCAGATTTGAATTCTCAGGATTTTTTT 247244 33 97.0 34 ..............A.................. CGCCGTCTACCAGCTCGATATGAGGCTCTTTTGC 247311 33 100.0 34 ................................. CACTTCCGTACAAGCGCCGAGCTAATCCCCAGCT 247378 33 100.0 34 ................................. ACCTCGCTCTCAGGTAATCTACATCATAAATTGC 247445 33 100.0 33 ................................. AAGCTGCGTTAGCTTGCCATCTGCGTCTTTCAG 247511 33 100.0 35 ................................. TTTAACAACCTGCCTACAAGGTCATCCTCATGCCA 247579 33 100.0 33 ................................. TGTAAATTGGCGTTGGAGTTACAGGCATGAATG 247645 33 100.0 34 ................................. AATGTTTTTTTAAATGCATCATGTCGGTTTTTGA 247712 33 97.0 0 .....................A........... | ========== ====== ====== ====== ================================= ==================================== ================== 14 33 98.5 34 GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC # Left flank : CATGGCACGAATGAAGCGGTAGTGGCGGCGATTTTGCGCGAAGGCATTCAAGCGATGGGCCGCCAGTATTGCCATCTGTCGGAGGGGCTGGATTTTGCAGCCCTCGCGGGCAGCCGCAAGGGCAAGCTCGTGATTTTGGAAGTGGATACGCAGCTCGCTGCAGAGCATGGCGTTATTTTTTATTATGCAGGCAATGAGGTTTGGCTTGCAGAGGAGATTCCGGCGGCATGCTGTCGGATATATGATTTGCCGATGGATACGGAGAAATCTTAGGCAAAAGAGTTACAATTTTAGCAGAGGTAATCGTAGCCGTTTTTTGGTGCGAATGTGAAGCTCACATGAAATCCCTAGGGGATTCGCACCTCAGAAAATGTCGATTGATGTCGTTTTTGAGGGAGTGTTTAAAAAGTCAACATTTTAATCATATGAGCTTAGCATTGTTTTTCTTGAAAAGATTATGAATTGATGCCATGATGGGATCAATTGTATGTATTTTCGCT # Right flank : CGTTATATCAAAGGCGCAGTTCTTCCATCCAGACACAACCCGTCTTTCGTACCTGCACGGAACAGTATGATGATAGGCTAAAATCGTGAAGGCCGCAAGCGATGCTTGCGGCTTTTTCGGCGTGACTGGACCATTTATGGACAGATGGGGCAAGTTTTCATTTTGTGATGACGAATGGATTGAAACGTAGTTTGCGTTGTGTGAAAATAGAGGGTAATGACCGTCTTTGCTTGTCAATGAAAGAGATCGTGATTCGGTGCTTAAACGAGAAAAGAGGTAAACTCGTTACTATATAGTAGGAGTGAAAGTGATGCAGCAGGAAAGCAAAACAGCTGTAGGTACCGGCAGGAGGCAGCTTATCGCCGTTCTGCTCCAAGGCGGGCAATATGAGCTTGATTGGCAGGAGGAGACCTTGCAGTCCGATTCGGAATTCAGCGGGCAAGCCCTTCAAGATGAGCTGTACAAGCTGTTTCGTGAAAATCCGGACGAATTTCTGCTAG # Questionable array : NO Score: 9.04 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC # Alternate repeat : GTCGCACTCCGTATGGAGTGTGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.20,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 2 252000-252910 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ040778.1 Paenibacillus algorifonticola strain XJ259 Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 252000 33 100.0 34 ................................. TTTGATCTGAATTTGAGTCTCTTCAAGCTGCCTC 252067 33 100.0 34 ................................. ACAAAACTGAAATAGGATGGTTGGTTATGAGAAT 252134 33 100.0 35 ................................. CAAAAATCAAAAAGAAATTCCCGACTTTTTAGGTC 252202 33 100.0 34 ................................. GCGTCACCAGCTGTACCAGTTAATCCAGTTGGAG 252269 33 100.0 36 ................................. GAAAGCATTGAATCGTACAGCGGGTGAGCGTATCCC 252338 33 100.0 34 ................................. AGGCGATAAGAGACCAACATTAATAATAGATTCA 252405 33 100.0 35 ................................. AGTCCATTTTGGTTTTTGCACCCCCCCTGTTAGTA 252473 33 100.0 34 ................................. CGGTATTCGTCGTAATTGGCTGCTTCCACTCTGA 252540 33 100.0 35 ................................. ACCAGAATCGGTAATTTTGGAGTCGGTGTTAGAGG 252608 33 100.0 35 ................................. AGCCCCCGCTTGGCCTGTGACTTGTTGCACCGTCG 252676 33 100.0 33 ................................. AATAAAAACAAATAGACCGCCCTCGGTCAAGGA 252742 33 100.0 35 ................................. TGCTTCTTAATGCGGCGCAAGAAATCCTCGACAAT 252810 33 100.0 35 ................................. TGTAAATGGCCATATAACGTCTGAATACCATTACC 252878 33 90.9 0 ..........A..C.....A............. | ========== ====== ====== ====== ================================= ==================================== ================== 14 33 99.4 35 GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC # Left flank : GGGGGCTGAAGAGGGAACTTCTGCTGCTAAAGGAATCGGGAAACAGGCTGACAGGAACATGGCTGCAACGGGTCGTAGTATAGGCGGAGCAAAGACGGATACTGAGACGAGCGCTTCAAAGGCTGAACCGACCGCAGGGAGCGAGGGAACGAAGCCGCGCCGGGGAAGGCCGCCGAAAAACAAGGCAGTTGCTGAGGCAGTTCAGGTAGCAACAGACGCTGTCCCGAGCAAGAGTCGCAGACGTTTGTAGAGGGGGCTGGTCATGTGGCTGCTTGCTGCGCGGCTTGGAAAAAGGGATGCTTCCCGAAGTTCGCTTCTGGTGCGAATGTGAAGCTCCCATGAAATCCCTAGGGGATTCGCACCTCAGAAAATGTCGATATGTGTCGGATTTTAGAAATTCTTTAAAAAGTCAAGGTTTTAATCATATACGCTTAGCATTATTTTTCTTGAAAAGATTATGAATTAATGCCAAGATGGTATCAATTGTATGTAATTTCACG # Right flank : CTTTACGACGCTGCTGGGCATGCTTGTCTTTTGCAGTCGCAGTCATGAGAACAGTCTCAAAATAAAAGAGTCTATCTATCTGGTAGGCTCTTTTAGACATTGGCTAATACCGTTTTTCAAGTGTCTCTGCTCACCGCTATCAATGTATATCAACTGAGCTGCCAAGATCATTTATAAGACCCAAGTCTCTTAAGATTCATAGATACTTGTTCTGACAACGCATCGTTAACCACTTCGTATGGAAAGGCGGGTTCCCTTTGTTTAAGATAACGGTTAGTCAATCCGAAAGGCATTTATTTTCATCCGGATGGATTGAGGGATTCGATTATCTTTTTCATGCTAATGGCGATTCAGATGGGGTTGCAACCTGTTTGCTGAATTTCTCGGATATCTATGCACCAGAAAATGTCTCAGTAAAAAAGAAGGCCCCAATCGAAATTAGCTACGAATGTGGCGACTTGAGCTTTGGGATGTTTGAACTGCTGGCAAATCAACCGCTT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.20,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 1 12340-13247 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAQO01000007.1 Paenibacillus algorifonticola strain XJ259 Scaffold6_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 12340 33 100.0 35 ................................. AGGAAGAGCCGGTTCGGCTCGATCGGCATGTTGGC 12408 33 100.0 36 ................................. CAAAAGTAATAAACTACAATATAGCCTATTACGACA 12477 33 100.0 35 ................................. CTCAAGCGCTCCGTTGACCTGCTGCCGGAAAAGCT 12545 33 100.0 34 ................................. ACCAGCTGACGAGGTCACGAGTCGGATAATTAAA 12612 33 100.0 35 ................................. AGCTCGAAAATGCTGTATTGGATTACAACATGCTT 12680 33 100.0 33 ................................. ATATGTTACAACCAATGAAGATTACACCAATAC 12746 33 100.0 34 ................................. TGAGATGTTAAATCTGGAAACCCGGCTTGATTTG 12813 33 100.0 33 ................................. AACTTGAAGGATTGGAGATAAACGGAAGCAAAT 12879 33 100.0 36 ................................. AAACGTTGGAGGTGGAAATAGTGTCCGAGCGTGGAG 12948 33 100.0 34 ................................. ATCTGGATCATCCACATAATGCACAATTGGCTTA 13015 33 100.0 33 ................................. CTTAAGGTCATTAATAGCCTGATCGGACGGCTT 13081 33 100.0 34 ................................. GATGACTAGATCAAACCAGTTATCTTTACCTGTT 13148 33 100.0 34 ................................. ACTTACTTATGAAGATCTTGAAAATAAACTCTAT 13215 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 14 33 100.0 34 GTCGCACTCCGTATGGGGTGCGTGGATTGAAAC # Left flank : AGTGGCTGTGCTGCAAATTAAAGGCCGAAGGAACGAAGCGGTTTAAGGAAAAAAGCTGCTGAAGCTCCTCCTCCGAAATCGCTACATTTTCCACAAAATTCACGGCCGAACGACGTTTTTCGATAATCGTTTTAAGTTCTCCCATGTTCAAACGCTCCCTTTGAAAAATCATTTTATGTAAGAATAGTTGAAGGCTTGTCTTTATGTTTGTAATTATAATATATCTACTTTAATTTTGTAAGTAGTTTTCGAAAAATATTTTTGTGGCTGCTTTAAGGGTACGATAACGCGCCTGGATAAAAGATTTCTCCACCTTTGTGGTGCGAATGTGAAGCTCCCATGAAATCCCTGGGGGACTCGCACCTCAGATTTTGTCGAACCATGACGAAAACGAGCTACTCTACAAAAAGTCAAGCTTACTCTTATCTTTTTTCGATATTATTTCGTTGAAAATAGCGGCGATTAATGCCATGATGGGATTAATTAGTACAGTTTTTGCT # Right flank : CAGGAGTCGATGAGTAATTCCGAAGCATACAAAAGGATATTTGACGAAAAAATTAGGTTAATAAAAGAGGCTATTGTTGAAATTCATTCCATACAAAAACAAATATCTATTACTGCTGTTGCTAGTTATTTAGAGATTAATTTTATACATGCAAGTGATTATAAATCTATAAAAGAAATGATAAAACGAGCCTTTTCTCACTATTTTGAAAAAACGAGTCAAGCAACACTCGTACGAGACTATTAAAAAATATATTTTCACAGAGTGATTAAGTGAAAAAATATAACATACCATTTATAGGGCATTGGAATTGTATTTGCGATGAATTTCAGGTCGGTATGCCTTTGTTTTTTACTTCATGCCTCAACGAAATGTGGTTGACTGGGTATTGCTCGAAGTATATTTTGAGAAACAGAAAGGAGCTCTAAAGATACGTATTTACGTCCTTAGAGCTTTTGGGTAAGGTGCTAATACTAGGTTCCTCTTACAACAACTAATTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTATGGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : NA // Array 2 91359-89987 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAQO01000007.1 Paenibacillus algorifonticola strain XJ259 Scaffold6_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 91358 33 100.0 34 ................................. AACTTTGCTGCCACTCGATTTTTAAACTCTGCCC 91291 33 100.0 35 ................................. GCGCCTGCCTTGAATATTGACGACGCAGCCTTAAC 91223 33 100.0 33 ................................. TTGTAGTCCGAGACCGCCCGCAGTTGCGAGATT 91157 33 100.0 33 ................................. CAGTAATCCGGAGGTGCCGTTATGCTGGTCGAC 91091 33 100.0 34 ................................. CCTTTGTAATAATCTCCACTCAAAGCCTTTAACC 91024 33 100.0 33 ................................. ATCGGCCTCTCTCCTAGTCTAGTTATCTTGCTA 90958 33 100.0 33 ................................. ACCTTTTACGCGGTACCACCTATTCCTTTTTGA 90892 33 100.0 34 ................................. AACGAGTCGATGGGTCACCCGTGCGTCTCCCGTG 90825 33 100.0 35 ................................. CTCTCTACCGATATGACATTGTTCCAAGCATGTGA 90757 33 100.0 35 ................................. GTCTCATGTGCGAAATCTATAAGAATAGCTACTAC 90689 33 100.0 33 ................................. CTCTGTGTAACCCTCCGCATCTATTAACTTATT 90623 33 100.0 34 ................................. GAATGAGCGAACAAAAAGAAACCACCGCTGGAAC 90556 33 100.0 33 ................................. GATAGACAAGGCCAAAGCGATTGACGAGCTTTA 90490 33 100.0 34 ................................. ACATAAGCGACTATGCGGTCTGTGGCGCCCGCGC 90423 33 100.0 34 ................................. CGCCAGACTGGATGCTGATGAAAGCGCCGTTCTG 90356 33 100.0 35 ................................. GCTGTTGGCTATATGATTACTACCAAAAGGAGGGG 90288 33 100.0 34 ................................. TTACGACGGCTTGGGGATAAGGCAAAACAGGGGC 90221 33 100.0 35 ................................. CCGTCACGACTCAGTTGCGCCAGCATGATAAAGGG 90153 33 100.0 33 ................................. AAAATAAAAAGCCGCTCATTTGAGCGACCTATA 90087 33 100.0 35 ................................. ACAGCGTCCAGTAGCGCGACAAGTCGTTCGGGAGC 90019 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 21 33 100.0 34 GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC # Left flank : TGATGCTGGGGACGGGTTATGAATCCTGTACAAGCTTTCATCTCGCTGAAGCGATGAGTGAGCGTCTGCCGACTAAACAGCTGGGAACAGCTATTTATGAAGGGGACGAGCGAGTATGGAAATGGTTCACGGATTTCGCTTATGACTCGGAAGATTTTGCCCGGATTGGGCAGTGCTACGACCATGAAGGCTCTGTGCAAAAAGGTGCGGTAGGCAGCGCCGAGTCCCGGCTTTTTGATTTGAAAGAGGCGGTCGATTTTGCCAAGCAGTGGCTGATGATCCATCGTTCGATGGAGTGAAAAATTTTATGCCGATACAGGTGCGAATGTGAAGCTCACATAAAAACCCTAGGGGATTCGCACCTCAAAATTTGTCGAATCATGACGAAAATCAAGGGCTTGGGGAAAAGTCAATATTTTATTTAGACTTTGTTCGTATGGATGATCTTGAAAATATATGCAATTGATGCCATGATGGAATCAATTGCATATATTTTCGCT # Right flank : TGCTTTTGCTGCTGCTCCTGACTAAAAAGTTGTGTGCTAATGGTATTAAAGCTGTGTATTAAGTAATAAAAAGGTTGCCGTAGTAATTAGCACTATACTCAACTAGAAAAGTCCCGATGGATTAAATCGGGACTTTTCTGTATTCAGGGGGCAACTGTTGATCTCAACAATTGGGAACGTATTCGTACAATCAGAAAATCAAACAAACTCAGTCAAGTTGAGTTTGCTAACATGGTTGGTATATCCCAAGGCACATTAAGTTAGTTGGAGCAAGATAAGTATAAACTTAGAGTAGTTATTGCCGGTTTGCTACTACTTTAAATAGCTGATCCATTTTTTGTTTGTTTGAGATATATTTCCCGATAAATTCCTTTAAATCATCTGTAGATTCAAATTCCTCAAGAACGTGACCATCGTACCATTCCTGGAGAAACTCACGGTGGATAACATATGTCTTTTCCTCCACAGTAAACGTGATTCGGTCTACATTTGGAATCAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.00,-6.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 217227-215982 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ040779.1 Paenibacillus algorifonticola strain XJ259 Scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 217226 33 100.0 34 ................................. ATCTGTTCCGTCGGAAGCTTGGCTTGCAAGTTAG 217159 33 100.0 35 ................................. AGCTGGCGGTGCTTTGGCTCTTGCATCGAGTGGAG 217091 33 100.0 34 ................................. AGGATCAGACGGACACGCTGCAACAGATATCTGA 217024 33 100.0 36 ................................. ATCCCAATACGTCATGGCTTCGTCAAACAGCATTTC 216955 33 100.0 34 ................................. ATTATCGCCGTAACGTCCTCCAAGAAAACATCAA 216888 33 100.0 35 ................................. AGTCATTTCGCGTCGTCCCTTCTTGCCAGCTTCGC 216820 33 100.0 34 ................................. TGATAAGAGTTATGAGTGCTTACCAGCTTAGGCA 216753 33 100.0 35 ................................. CAGTGCCCTGCTGGAGCAGCCAAGCCAGCCTCATG 216685 33 100.0 35 ................................. TGGTTCAGCAGCTTGCATAATCCCCTTAGCTTCCT 216617 33 100.0 37 ................................. TGTTAATGCGACGGCATCTCGCAATGTACGGACGCTA 216547 33 100.0 35 ................................. TTTGATAGTGGGATATAGACTCTTGTAAAAAGTCC 216479 33 97.0 34 .............C................... AGATAACGCGCAAGACTGGCGAATTTATTCATCG 216412 33 97.0 33 .............C................... GACGCTGGGAAAGTGATAGAGAAGCGTGGCTGA 216346 33 97.0 35 .............C................... CGAATAAGTTATAACCAACAGTTGACAAACGCGAC 216278 33 100.0 33 ................................. ATTTCCTCCAATTAGAATAATTTATTTTTGTTC 216212 33 100.0 37 ................................. TAATTTTCCTAATTATAATGGAGGTATGTGACATGGA 216142 33 100.0 33 ................................. ATACACAGTCCAGTTTGATGCCGTGTTAGACAC 216076 33 100.0 29 ................................. ATTGTAGCCTCAAGCCTTCGCAGCATGAT 216014 33 97.0 0 .......................A......... | ========== ====== ====== ====== ================================= ===================================== ================== 19 33 99.4 34 GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC # Left flank : GCAGCAAAATACGAAGCGCAGCGTGAATGCAGTTGAGGAAAGCGCAACGCTGTCGGAGAAAACGGGAGAAGCATTCGAGCGTATTACGAAGATGGTCAACGATACAGGCCATCGCGTATCCGAAATTGCCGCAGCGAGCGAAGAGCAGGCGGCCCAAGCGACAAACGTGTTGACTACCGTTGAAAATGTTTCCGCAGCTGCCGAGGAGTCCGCAGCGAGCAGCGAAGAATCCGCAGCAACCGCGCAATCGCTGGCCCAGCTTGCGGATGATCTCCAGCATACGGTGTCGATGTTTAAGACGGCATAGTTGAAGAAATAGGTGCGAATGTGAAGCTCACATAAAAACCCTAGGGGATTCGCACCTCAAAAATTGTAGAAAAATGTCGAATTTGAGTTGTTTTAAGAAAAGTCAATGGTTGTCTTAGATTTTTTTGGTATTATATGCATTGAAAAATGAGGTGATTGATGCCATGATTGAATCAATCACTTGTATTTTCGCT # Right flank : CGCATATAGTATGCAAAAAGTATGATTATTTTTAATCTATATCTTCTTCCGATTCCAACGATCAGAACCTTACGCTCCTACCTCTCTTGAAAAAACGGAGCGCCTTTAATCCAAAAAACACCCGAAAATCCGCTAGAACAGCGATTTTCGGGTGTTTTTTGCAATGCCCTTTTACTATTTAATATACACGCTGCCAAACGGCAGCACTTCACGCAGCAAACGCTTGAAAAATCCGTCATTTTGCAATGGATGCTCCAGGTCTTTCCCATGCGAGCCGGTCTGAATAAGGACAGGGCCGCTGCCGGTTATTTTCCACTGGACGTTCATGTTCTGGCTCGCCAGCTGATTGCCGTAGACGGCTAGCTGGATGCTCGCATTCGCGGGATAAGCGACGAGCGAGCTAGTATTTACAAAAAGCGGGCGCTCCTTGTCCAGCTGGAGCACCGCAATATCGCCGCTTGTGATGACACCAAGCTCGCCGGGGCCGGAGAAACGCATCC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTATGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.00,-6.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA //