Array 1 228426-227362 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVFD01000005.1 Amycolatopsis sp. BJA-103 contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 228425 29 100.0 32 ............................. GGAACAAAAACTATGCCTACCAGCCAGAACGG 228364 29 100.0 32 ............................. CAGCACGTCCCGCTCTCGGGTAAGGTCGGGAA 228303 29 96.6 32 .........................G... TCGAGTACGACGGCGACGGACAAGGCACCCGC 228242 29 100.0 32 ............................. GTCTCCGTCATCGAGTGCGGCCAGCGTGTCCA 228181 29 96.6 32 ............................C GCCGACCGGGAGTTCGAGCTGGCCGTGAGCCA 228120 29 100.0 33 ............................. GACCGGGTGCACCACGACCCGGCGAGGGCGCTG 228058 29 100.0 32 ............................. CAGTACGAGGGCAAGGTGATGTACCGGTGGGG 227997 29 100.0 32 ............................. AAGGCCGGCGAGTTCGCCTCATCGGTAGCCAC 227936 29 100.0 32 ............................. GGCGGCATCGCACAGCCGTGGGGCACCGCGAT 227875 29 96.6 32 ...........................T. CTCGTCTTCAACACCGAGACGATCTGCTGGCT 227814 26 86.2 32 ...........---T.............. GGATCCTGGTTCGTGCGGTAGATCCGGATTTG 227756 29 96.6 32 ....................A........ CTTGCCCCCAGGCGATGGTAACCGGATTTAAC 227695 29 100.0 32 ............................. ACCGGCGGCGTCGGCCCGCAGGTCATCGCCGC 227634 29 96.6 32 ............G................ CCTTTGAGGACGGTTCCGGTCAGCTCGACAGG 227573 29 96.6 32 ........T.................... GCGATGCGGGCGCCGATGCCCAGGGCGATGAG 227512 29 93.1 32 ...T.......G................. TGCCCTACGAGCAAGACGATGAGCAGAGGGAC 227451 29 96.6 32 ................T............ GCCGTGCCGTCACACCCGCCGGTCCCGTTGAA 227390 29 89.7 0 ........T...GA............... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 97.0 32 GTGCTCCCCGCATGCGCGGGGATGATCCG # Left flank : CCTATGGAGACCTGTCATGACGGTCATCGTTCTCACCGCCGTGCCACCGGGTCTCCGCGGCCACCTCACCCGCTGGCTGCTGGAGATCAGTCCTGGCGTCTACGTCGGATACGTCTCAGCCCGCGTCCGTGAGCTCATCTGGGAACGGATCGTCGAGTTCGTCGCCGAAGGCCGAGCTTTGATGGTGCACTCTGCCCAGGGAGAACAACGGCTCGAGTTCCAGGTACACGGACACGACTGGACACCTGTCGACTATGACGGCATCACCCTGATGCGCAGACAAACCACCCCCGCCTACGTCCCAGGAAACCCCGCAGACGTTCCACGCCGACGGCTGCGGACGGCTCGTCAGAGGGCGCCTCGACGCGCGACGAGACCGTCTGGAAACGGCGCAACGCCAGACGAAAATTCCGCAAGAAAGAGTAATCCTAGCCTGCCCGCAGCCAAACAAAGTGAAGCAAAACAGCTACCAGACGACGCTCCTTCGCAGGTCAGGAAGT # Right flank : ATGTACGCCATACGACCCCGTTGAGCACGACAGGAAAAACGGAGACAGAATGGAGCCCAGATCGACCGTTTGTAAACGCAAACATGATCTTGCACGTCGAGAAATTGCAGTTAGAAGCCCTGCATTTGCGATCTGTTTCAAGATCGCCGCAGTCGAACCCGCTGGCTTTAATCCGAGGGAATCTGCAGCGGCCAGGAGCGCCGACTCCGCACCGAGTCCGCCCCGCCCGGAATGGTGATGGTCATCGCGGATCTCCCCGGCGGAACGACACGGCAAGTGTGCGGCTTGCGCTGGCCTGCGACTGGTCAAGGTCGCGTGTCTTCTCCGTCGTCCGGGGTCGATCCAAGGATGGCGCGGATGATCGCCGCGACCGCGAGCAGCCCGGCGGCCAGGCCGACCTGCGACGTGTCGGACGGTAACGCTGTTTGCATTCGGTTCCGCTTCGGGCAGCTTCGAATCGCTGTCCTGGAATCAGGGTGCCCACTGCCGTTGGCAATTCA # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCATGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 238403-237885 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVFD01000005.1 Amycolatopsis sp. BJA-103 contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 238402 29 100.0 32 ............................. TACACCCGCCCGCTGGTGGAACTCGGCGCCGT 238341 29 100.0 32 ............................. ATCTCGACCGGCCGTGGTCGGCGTGCATCTGG 238280 29 96.6 33 ............................C GTGATCGATGGACCTGAGATCGACTTCAAGCCC 238218 29 100.0 32 ............................. CCGGGCATGTCGATCTGCTGGCGCACCGTCAT 238157 29 100.0 32 ............................. CCGCAGTCGTCGACGGGGATCTCGGCGGTCGG 238096 29 100.0 32 ............................. CGCTGGACATCGGCGTCGGCGACCACGTCCTG 238035 29 100.0 32 ............................. GTGCTCGCCGCACCGGGGGCCCTGTACGCCTC 237974 29 100.0 32 ............................. AGTGAGACATGCCCATAGAGCAGCCATTACTC 237913 29 82.8 0 ...........GAA........C.G.... | ========== ====== ====== ====== ============================= ================================= ================== 9 29 97.7 32 GTGCTCCCCGCAGGCGCGGGGATGATCCG # Left flank : CTGAGCTGCGGTTCGATAGGTAGAGCTGGACGGTGGTCGCGCGGGTTGCACGGACTTGGTTTTCGGATTCGGCGGGCACATCGGGAGCGTGCGGACTATCTGCTGTTTCGTGGTTGTTCGGGTCTGGTTTTCGGGTCGCGGGTTGCGTCGGCTACCGGGGAGGTGCCGGTGCGCGAAGATGACCGCATGGTCGACTTGGTCAAGTTCCTGCGGGGCCGCAACGAGGATGGCAACCATGCCTACGCCGAGGTGGCCCACCGCTTCGGCGGTGACGTCCTCCTCGACAGCCACCTGCCGATGCTCGACCTGGTAGACATGCTGGCCAGGCAGTACGAAGCGACGGATCCGGCGGATGTACGCCACGCTGGTCTCGCGTACGCGAGACCAGCGTGCTAGTGCAGTCCCCAGCGGACACCGGCATGGATGGACGGTGCAGGATCCCCGCAGGCAAAACGAAGCAGTTCAGGCTGGGAGCGCGTTATCATCGCAGGTCAGCAAGT # Right flank : AACCAGCGCGGGCCTGGTCCACGTGGCGGTGTTCCGTGCGGGTGCGGAGATTATCGGGTACTGGCGGGGGATGACTTTTCGAGCTTTGGTGCTCGCGCACTATGGTGCCCCGAGTCCGAATTTCGGGTGTATCCATCGTTGTGCCTGTGAGCTGGCTACCGGAGTCGGTGTGGTCGCGATTTTGTCGGTGCCTCGTGCAATAGTGCGCCCTTCGTGTGATGGGGAGGGGAGAGGTGCTGATGGGGCAGGTGTCGTTGAGTGCTTCCGCGCGATCAGTGTGGGCGAAGTCGGTGGATGAGGCTGGTGATTGGTTGCCGTTGTGGCAGCACATGGACGATTCGGCTGATGTTGTGGCCGGCTTGTTCAGGAACTGGATACCGGCAAGCGTCGTGGGTTTGCTCGCGATGGAGTTCGACGGAGATATTGATCAGTGTCGGGCTGCGGTGAGGTTTCTTGCCGGTGTGCATGATCTGGGCAAGGCGACGCCTGCGTTTGCGGTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCAGGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCAGGCGCGGGGCTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //