Array 1 474203-473877 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB899637.1 Succinimonas amylolytica DSM 2873 F557DRAFT_scaffold00002.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 474202 36 100.0 36 .................................... GAATAAGCGGCGAAAACGTACACCTCGAAGATGTCA 474130 36 100.0 37 .................................... CAGAAACGAGAAGTAAAAATCCAAAATCGTCCGAGGA 474057 36 97.2 36 ............T....................... TCAAAGGTCTTTTCCATGCCCGGCCAGTTCCAGACC 473985 36 94.4 38 ..............TG.................... TACTCCCGGCAGCTCCGGATCGTCCTCAAAAGGTCATC 473911 35 91.7 0 ...........A...............C...-.... | ========== ====== ====== ====== ==================================== ====================================== ================== 5 36 96.7 37 GCCGCAAAGGGGCCAACCCTTTCGCGGTATTGAAAC # Left flank : CTCAAAACAGCATTTTAAAGCTGCAAAAATTTAGGTTTCTGGAGAATTCCCCTATAACAGTGCCGGAGGCCGGCGGAAGAAGGCACCGGGTAACATTGCAGCCTGAACTCAGGATTACTTTCTTACAGACTATAAGCAGATAAAAGTCTTAATAATGCGGATATGTAACCTGTTACACAGACTAATGATATAAGCAACCTGCAGGATATAAAATTAACAGTCGGATCCAGGTCTTGTAATTGGCCGCAAATATGCGTTAGCTAAAAGAATAAAAACTATTACTTAAAAAATGAGTCTAAGGATCTTAAATGATGTACCGCATTTCAGTTTTTTGTGATGGAGATCGGGCACCCAGGTAATATTCTCCTTTTTAGGGGATCGGTTTTTTGAAAAAGTGGTAGAATTTTATGTAACAAAGATCTAACTGGAACACTGTCAGGATGTGATGTATTTTTGACACCGGTTGGGCCTTTGTGACATAATGGCCCCCGAACGGAGGA # Right flank : CTTAGTGAAGCGTTCAAACACACTCCCGCGAACCTTTCCGTAACTGTAAAGGTATTAACCTTTTGCGGTGCGTGCAGTATTGATTTCTTTCATGTCAAAAACTGAGTTTCCCGCTTTTAGTAATTACCTGCGCTTACGGAATTTTCTTTTGAGAACTCATGCCCGGCATTTTCATTTTCCCCGTCCTTATCCCCTTCCAAACATCCGGGATATTTCTCTGAAGGCCATGGCCATCCCCTCCCGCAGGATTCCTGACGGAAGGAACAGGATTACTGCCAGGAACCGGAGACATAAACACAAAAACGCAAGCTTCTGTCCGCAAAGAACAGGAGAAATATAAGGAGAAATATCAGTAGAGGCAGACTCAGGAAGTGTAATTGACAGAGGGTATCCCCCAGCTTTGTAGTTTCACTCGCTATGAAAAATGATTTGGGGCTGTCTTCCAAAAGCTCGGCAGAAGCACTCACGGGATGGTATTCTGAAGAAATCCCCCGCAGCCG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAAAGGGGCCAACCCTTTCGCGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 2 506756-507378 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB899637.1 Succinimonas amylolytica DSM 2873 F557DRAFT_scaffold00002.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 506756 36 97.2 37 ............T....................... AAGACTGTTAAGGATCTCAAAAAGAGTGGAGCCGTAA 506829 36 97.2 36 ............T....................... CCCAGATTGTGGAACCGGGTAAGCAGAAGGGACGGA 506901 36 94.4 37 ............T..G.................... CGGCGTAGCATTCATAGTATTCATCACGGAGAATTTC 506974 36 100.0 37 .................................... TCAACCTCGCCAGTAACCTCAAATTCTTCGGTTACGC 507047 36 100.0 38 .................................... TACTCCTGCCGAGGTACGCCGCTCCACTCCTGCGGGAT 507121 36 100.0 38 .................................... CATTGTCGCCGCAAATCTTATGTAACCCGGTTTCATGG GG [507128] 507197 36 94.4 37 ............T...T................... TCAACCTCGCCAGTAACCTCAAATTCTTCGGTTACGC 507270 36 97.2 37 ................T................... TTAATTAAAAAATACACATTAACCGGGCTGTCCGCCA 507343 36 97.2 0 ..................................G. | ========== ====== ====== ====== ==================================== ====================================== ================== 9 36 97.5 37 GCCGCAAAGGGGCCAACCCTTTCGCGGTATTGAAAC # Left flank : CTCAAAACAGCATTTTAAAGCTGCAAAAATTTAGGTTTCTGGAGAATTCCCCTATAACAGTGCCGGAGGCCGGCGGAAGAAGGCACCGGGTAACACTGCAGCCTGAACTCAGGATTACTTTCTTACAGACTATAAGCAGATAAAAGTCTTAATAATGCGGATATGTAACCTGTTACACAGACTAATGATATAAGCAACCTGCAGGATATAAAATTAACAGTCGGATCCAGGTCTTGTAACTGGCCGCAAAAATGCGTTAGCTAAAAGAATAAAAACTATTACTTAAAAAATGAGTCTAAGGATCTTAAATGATGTACCGCATTTCAGTTTTTTGTGATGGAGATCGGGCACCCAGGTAATATTCTCCTTTTTAGGGGATCGGTTTTTTGAAAAAGTGGTAGAATTTTATGTAACAAAAATCTAACTGGAACACTGTCAGGATGTGATGTATTTTTGACACCGGCTGGGCCTTTGTGACATAATGGCCCCCGAACGGAGGA # Right flank : CCTGGTCTTAATCTTTCCATCCACGTAAATCTGGATGTCAGCCGCAAAGGGACTGTCCCTTCGCGGCAGGGCCCTTTTTGAGTTAAAAAATGTTTTTTCGTTTTATAGAAGCTGCCGCCCGTATGCGGTATTCTGCTTTCTGAATCTTTTTTCTGATTGTCTATTTTTATTCGTTCCTGCTCTGGAGTTTATTTCCAGAATACCCTTGGAACCGCTGCTGAGAATTCCTTCCTGCCCCAAACGCCGGAAAGCAGCATGAAATTTCCCGGAGAAATCCTGCAGTGTCCGGTGCCAGTAACAGGTTCTGATTATCTGGTTATCTCCAGGAGGGCGGTTTTTCCCCAAACTCCTCCTGGCCAGTGCCGTCAGATTCCCGGACAGAAGCCGCAGGCCGTAAGTCCCTTATTTAGTCCCTAAAATCCCCTAAATCCCATTCCTTGGATACCGCGCACCGGAACAGAGCTTTTTCAGCAGTGCCTGATAATCCTTAGCTTCCGTTC # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:0, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAAAGGGGCCAACCCTTTCGCGGTATTGAAAC # Alternate repeat : GCCGCAAAGGGGTCAACCCTTTCGCGGTATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA // Array 1 1641631-1641300 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB899636.1 Succinimonas amylolytica DSM 2873 F557DRAFT_scaffold00001.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1641630 28 100.0 32 ............................ AGGAGGCCGGGGAGGCGTATAAGCTGTTTTCC 1641570 28 100.0 32 ............................ GCAAAAAGGATATTATAGAACCTGTTTAATGC 1641510 28 100.0 32 ............................ ATCACCAGAATAAGACAGGGTTCCATCAAAAA 1641450 28 100.0 32 ............................ GGCGAATATTTCGAGGCCCGCCGGAACTCCCG 1641390 28 100.0 32 ............................ GGATATTCAAAATCAGATAACATAACGATTAT 1641330 28 100.0 0 ............................ | TCG [1641306] ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTATCTGCCGCATAGGCAGCTTAGAAA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATAACTCGGCCGCCGAGAGAGCTATTCGTGACTTTGCAGTGCTGAGACATTCAATGCCCAGCGGATTTGGCTCTATCGAGGGAGCGAAGTCCACTGCTGTGTTTTCATCATTTCATGAAACCTGCAAGGTCCATGGAATCGACCTGGAAGATTACCTTGAATTTCTGTTCAGATATATGGGGATTCACAGAGACGAACTGAAAGATGAATCGCTGTCTGATGAAAGAAGAAATGCTATTCTTGAGCAGGCAATGCCGTGGAAATTTAAGAAGGCCTAAAGTACTGACTTTAGACCTAATACAATTTTTAAATT # Right flank : GCTTTCAGAAAACAATTTGAGAGACTCAAGAAGTTTCCTACGGGTAAAGCACTTTTAGCCACCAGCCGTGATAAAACCGGCAGCGCCGGACTTATCCCCAAAGTGGCAAAAATCAAAAAAAGGCGCCACCCCTGAAAAACAGCCTTCTCCAAGGTCATCCTTCAGTTCTTCCCGAAAATCCCCGCGAACTTATCCACGGTTACGGTGAACAAAACTGTGAATTAAGGAATTTTTTCAAAAACCGGAAAAATAGTTCTTGATTTTCCGAAACGGGATGCCGTACCGGGCTTGCCAATGAGAAAAATCCGGAGCCGCTGCACCATACAGAGACCCCGTTTCCGCACAGGAACAGCACTCCTTAATCCCCCGCACGAACCTGGGAGCCGGAATGCAATACCGGAAATGTGGCAACCAGATCTGCACTGCGGTAAACGTAAAGCCGCTCGCCTATATACCTTACCAGAAGCTTCACGCCGCGATACCCCCGGGGAAGCTCGTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTTTCTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1650417-1645763 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB899636.1 Succinimonas amylolytica DSM 2873 F557DRAFT_scaffold00001.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1650416 28 100.0 32 ............................ ATGGATCCGCAAATGTCTGCGCGGGCGTCGTC 1650356 28 100.0 32 ............................ ATAAAATGCCGATTATATCCACTTGCAGAAAT 1650296 28 100.0 32 ............................ TTTAGCTTTATTCTTAATTGCTTGTTTAGCAG 1650236 28 100.0 32 ............................ TTAGTCAGAGAGAGGCCGGGGGCTACCCGACC 1650176 28 100.0 33 ............................ CTGTTCCAAAGCCAGTGTTAAAAAATTCAAAGT 1650115 28 100.0 32 ............................ GGAGGTTCCCGCCTTAATCTTCTGCTCATAGC 1650055 28 100.0 32 ............................ GCTATTATGGCGGCCTTTTCTTTTTCCTTTAT 1649995 28 100.0 33 ............................ GTTTCGAAAGTTTCCGGTAAATACATCATTACT 1649934 28 100.0 32 ............................ ACACATAGCAGATTATACGTATATCAAAAAAG 1649874 28 100.0 33 ............................ TTGTCATCGCCGCGGCGGAGGGGGTGCTTCTCC 1649813 28 100.0 32 ............................ TGATTTTGCCTTAGCTGCTTTTGAATTAAATT 1649753 28 100.0 32 ............................ TATTTGGTGCTATTTTTTTGTGCCTACAAAAT 1649693 28 100.0 32 ............................ TCCAGCTTAGAAATGATAAAACCTGCCACAGG 1649633 28 100.0 32 ............................ GCACTCTCTGAAAGATTTTACCTGCTTCTGCT 1649573 28 100.0 32 ............................ TTGCTAGTAAGGGATCTCCCGCCTCTCGGTCT 1649513 28 100.0 32 ............................ AAAAGAAAAGTAACAATTTAAAAATTTAACAA 1649453 28 100.0 32 ............................ GGTAATCTGATAACTTCCTCTGGGATATGTAA 1649393 28 100.0 32 ............................ TGCCAGGAGGTAAGGTGGGGGAGGTTGTAAGC 1649333 28 100.0 32 ............................ AGCCCGGTATCCGCATTTTTCTGATGTAAGCC 1649273 28 100.0 32 ............................ TCAGTGATAATTGCATAGCTTTTGCTTCCGAC 1649213 28 100.0 32 ............................ CGGTGGACAGGTGCGCCGCTATACGATACCTA 1649153 28 100.0 32 ............................ GAGATAATGAGAGCGGCGGCAGAAGAAACAGC 1649093 28 100.0 32 ............................ AAAAAATGGAAGTAACAAGATTAAAAGAAATT 1649033 28 100.0 32 ............................ TCCCGCCTGACGCCACCATCGCGGATATCATG 1648973 28 100.0 32 ............................ GACATATAAGAACGTGCCAAAAAAAGCTTTTC 1648913 28 100.0 32 ............................ TTTTACAATATCCGGTTCATAACCTTTCATAA 1648853 28 100.0 32 ............................ CGGTTAAATTTTGTAGTATCATGCATTAATTC 1648793 28 100.0 32 ............................ GTATAGGATTTGCTCAAAATGCCCTATATTGC 1648733 28 100.0 32 ............................ CACTCTTATTATGTGACAATTATCACATATTG 1648673 28 100.0 32 ............................ TCCTTATCTGTGGAAAAGTATTTCCCGTTGCT 1648613 28 100.0 32 ............................ GGCACGTTATGCCGCAGGAACTTGCAACACGT 1648553 28 100.0 32 ............................ TTTTTTGTTTAAAAATCTGTTTTAATAAATCC 1648493 28 100.0 32 ............................ GATACTGGCAGGAGGGTTATCGGTTAAATTCT 1648433 28 100.0 32 ............................ AACAGAAGTCAAAGCGCCAGTAGTGCGTTATG 1648373 28 100.0 32 ............................ AGACATCATCAAAGGATCTCCGGTGCTTTGGA 1648313 28 100.0 32 ............................ GGAAACTGTCTCTCTCCCGATTCAGTGATAAC 1648253 28 100.0 32 ............................ GTGTCTTCATGCTCCCCGCCCGCGCGGGCTTC 1648193 28 100.0 32 ............................ GGATCGGTAATATCAGCCACAAACAAGATATT 1648133 28 100.0 32 ............................ GCGACGCTAACCCTCACGTGCTCATCACCGGA 1648073 28 100.0 32 ............................ GCACGTAACAAAAAAAATGATATTGTCTATGA 1648013 28 100.0 32 ............................ AGGAAAAAACAGGGGGAAATACAAAAAAAACT 1647953 28 100.0 32 ............................ CTTACATCATAAGGCTTTACGCTTACATTAAT 1647893 28 100.0 32 ............................ TTGTTTTTATTATTATCAAAACTGATACACTG 1647833 28 100.0 32 ............................ ACAGACTGTCGGACAGCTGGACGCGCTTATCG 1647773 28 100.0 32 ............................ GGGAGATTTTAGGCATAGACCTCCCGGAATAT 1647713 28 100.0 32 ............................ GCCTGTCCTCCGGAGGTGCGGGAGCTCTTATC 1647653 28 100.0 32 ............................ TGCTGGAGCGATTCGGTTATTCCGTCCCTGAC 1647593 28 100.0 32 ............................ ACAATGAACTAAAATTTAAATTTACACCTTCT 1647533 28 100.0 32 ............................ ACGGGGAACATTAAAACGGGGAGGTTAAAAAT 1647473 28 100.0 33 ............................ CCCAAATGACAGAGAGAGAAAAGGAGAGGAAAA 1647412 28 100.0 32 ............................ TGACTACTCCGGAGACCGTTTTCAAGTTTTCA 1647352 28 100.0 32 ............................ TTAACGCTGAACAGGCATACGTCCGGAAAATG 1647292 28 100.0 32 ............................ GTGAAGTGCTCCAGAGCAATGCCCCGACATAC 1647232 28 100.0 32 ............................ AGCCGGCAATATTCCCGGAACCTGTCCCATTC 1647172 28 100.0 32 ............................ AGAATGACAATGGTCTGGCCGATACCGGTAGC 1647112 28 100.0 32 ............................ GCTCCCATAGCAGATCAAATAATGAGGTATAT 1647052 28 100.0 32 ............................ TCCATCCACGCCGCGAAGGCATTCATGGTAGC 1646992 28 100.0 32 ............................ TCAGCGGTCAGTCCGGCGGCGCCGGCCTTAAC 1646932 28 100.0 32 ............................ ATGGACGGAATCCCGGAGGGCGGTTACATAAT 1646872 28 100.0 32 ............................ AGCTTTTACCGTTCAATGTAAGATGTAACATA 1646812 28 100.0 32 ............................ GGTATAACTTGTATTATCTTTGAGACTAATTT 1646752 28 100.0 32 ............................ ACCAGTGCCGCAGTTCTGCCGGTGTCATAAAT 1646692 28 100.0 32 ............................ TGAAGCCTGAAATAATGAGAGCGGCGGCGGAA 1646632 28 100.0 32 ............................ TTGCTCATTGATACTATTACCAATATACAGAA 1646572 28 100.0 32 ............................ ATGAGCCAGGGATTTTCTCAGGAGCGGGAAAG 1646512 28 100.0 33 ............................ TTGTAATTTTCCCCACCGAGGAGGGAAACAACG 1646451 28 100.0 32 ............................ TTTCATTACCGTGTACTGTTGCGGCATCCCAT 1646391 28 100.0 32 ............................ GTTCCGTTTACGTATATAATGATCTCATATCC 1646331 28 100.0 32 ............................ GCTTATTATATGCGTCCATGTGAACGCCATTA 1646271 28 100.0 32 ............................ ATCAGGAAGGTGGCCTGATATTTAGGGTCGGC 1646211 28 100.0 32 ............................ GATATATAGAAAAGTCCCGTAAAATGCTTTCT 1646151 28 100.0 32 ............................ AAAAGTCCCCATATAACACGTTTTTAACACGT 1646091 28 100.0 32 ............................ GCAAGTATATCATGCAGTTCTGCAAACGTTCG 1646031 28 100.0 32 ............................ AATAGTTTAATTTTTAGTCATTCTTCGGTTTA 1645971 28 100.0 33 ............................ GTATAGCATATAACTTCGGCACGCTAAGTCCAT 1645910 28 100.0 32 ............................ TGTTCAGCGTTAAGGTGCGGGAGGTTGTACGC 1645850 28 100.0 32 ............................ GGCCGTGTGTACGAACTTGCACCGAATAGCGA 1645790 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 78 28 100.0 32 GTTATCTGCCGCATAGGCAGCTTAGAAA # Left flank : CAGTTCAAGGAGAATAAGGAACGGCTTGTGAGACGTTATGCTCAAAGACATCATGTGGATATGAAACAGGCAGAAAAGGAATACTCCTGTTACAAAAATCCAGAAAATAACCTCCCTTATGTCACTCTTGACAGCCTAAGTAGCGGACAACGCTTCAGACTGTATATCGACGAAGTGTTGCAGGTTGAGAACAACAATACTTTGGTTTTTAGTAGCTATGGACTTATAAAGTCAGGAGCTCTACCTTATTTCAGCAATTCAACTTAATTGAAAACCATGGAGGATATAACATAGATTTATCTTTGATATTTTTATTCTAATGTTTTGTAAAACAACCATTTTTTTGGGAGAGACTAACGAGTTGTTGCATTTTCTACAATTTGTAAGGTCTCGTTATTTATTCATATATGACTCATTCCAACATCATATATCTTATTAAAACTGGTTACTGTTTATGTAAATAGTCATTTGATTCTTGTAGTACAATTAAACTTCTTGTA # Right flank : TTCAAAAAAAGTATTAGGTCTTAAACCGTCTTTTTAAGGCTTCAGGGATTCTTGACAAAAGTGCTGGTGAATCCGTACCATATCGCACACGAAAATCGGGATGTGTTGAAGGATTTTGCAATGGAAGCGAAGATCACAAATAACAATCTTCCTGCTAATCAGCACGATACTGATACTTCCAAACTGGACAACCTTTACTCGTTAATCGAAAAACTTACATCAACCATTCAAGAACAGACCTCAACCATTCAAGAGCAGACCTCAACCATTCAGAAGCAGACTTCAACCATTCAGAAGCAGACTGAAGCCTTTCAAAATCAAGCCAAAAAAGTTGAAGAACAGGAGAATAGGATCAGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTTTCTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2021268-2021932 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB899636.1 Succinimonas amylolytica DSM 2873 F557DRAFT_scaffold00001.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================== ================== 2021268 35 100.0 35 ................................... TAGATACTCGTTATCATTCATGTCTATGCCCTCCT 2021338 35 100.0 36 ................................... GATATACACATGATTCTCTGATATATCAAACTTCAA 2021409 35 97.1 34 ..........A........................ CAGGGAGCTCAACTTTACTGGAAGCTTATTTCGT 2021478 35 97.1 33 ..........A........................ TCGACAGTGGTCTCAGCGGTCTGCTGTTCAGCA 2021546 35 97.1 35 ..........A........................ TAGAAGTATTTGGCCCCATACATTTGGGCACCAGT 2021616 35 100.0 36 ................................... AGTAATACTTAGCCAGATATCCTTGGTACTTGGCAG 2021687 35 100.0 35 ................................... ATGAGCCAGACCATCGATTCCATCGGCAATCTCGA 2021757 35 100.0 36 ................................... CCCCGGTAATTTCACGCAAACGCTGGAGCACCTCAA 2021828 35 100.0 36 ................................... TTTTAGCACATTGATTTCTTAATCTTGCCATAACTA 2021899 34 88.6 0 ..............T..A...........-....T | ========== ====== ====== ====== =================================== ==================================== ================== 10 35 98.0 35 CTTTTTTTATGATTCCCCGACTTGGGGACGGAAAC # Left flank : ATGCTGATACTCTTGGCGAGATTAATATTGAATATATCAGAAAAGCCCTGGATTTCTACCAGAAGCAGGCTTTCAGGTATTTTCATCAGAAAGTTGGCGAGGATATTGGTGACGATCACGACGGGACTATCTGGCTTGGCGGAGGGGCTGGTTTTACGTCAAAGTCCATTGTTTATCAGATTTTTGAGGACCGGGCTTTTCAGGTGGCTAATGATATTTTCAGATCCCAGCTGAGCCCTAAAATATTTCAAAAACACAATCACGAAAAGTACAGTAATATCTTGACGCCGCACATGGGTAAATGTACTATATACAATAATCTTTTATATGATATGGGAAGAGCACGGATCACATTTGTTGACTAGTTTTGCCCCGATCATTGATTTATAAGGCTTGCTTTATGGTCACAAGTCTTGGTTCTTTAAAAACTTCTCTTAAAAAATTTTTGCGCCGATCTTGCCCAAATCGGCCCTTATGATGTAAGGGTTTGCGGAGGTGCC # Right flank : TTATAGATGGAATTTTTATGATGCTATAGACCACTTTCTTTTTGGTGATTTCTGTATTGATGGGGCAAAAAGCTGTAGCAGGAAAGAATTATTTAGTGGGGGAGCGCTGTTTCTAGCTGACAATTTAACGGACGGATTCTGTTTTAATTCCTGGAATGATGAGGATGGAGAGAGTTCATTTTTCTGCTCCTTTTTGCGTGCTATCTTCCCCGGTCTTGCTTATACTTCAATTTTGCACGAAAAAACCGGGAATCCTGCGATCCCCGGTTTTGAGCCCTTTTCGGAACAGAAATTTCTGTCAGATCAGGCTACCATTCGAAAATTTACGCTGAGAGCCTCCCTTTCGAGGTCAATCTCAACAATCCTGGCTCTGGGAATAAAGTTAAAGTCAGTAGCGGTAGCAATGGTGTAGGCTCCCATCATCTTGCCGATAACCAGATCACCTACTTCCAGTTCCGGAAGCGGGATGTCCTCGGCAATGATGTCAATACTGTCGCAGG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTTTATGATTCCCCGACTTGGGGACGGAAAC # Alternate repeat : CTTTTTTTATAATTCCCCGACTTGGGGACGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.30,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 44571-45238 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB899641.1 Succinimonas amylolytica DSM 2873 F557DRAFT_scaffold00006.6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 44571 35 100.0 33 ................................... CTCAAGCTCTTTGACAGAGCTATTACCTTTCAA 44639 35 100.0 34 ................................... GGGTTCTCCTTGAAGTCCTCAGGGTCAGTATAAA 44708 35 100.0 39 ................................... TTGGCAATTTGTAGTTATCATTCATCAGCTTTGTTCCGC 44782 35 100.0 36 ................................... AGTATTTAGCACACTGTGCAGTACACAGTGCATTAA 44853 35 100.0 33 ................................... CTCAAGCTCTTTGACAGAGCTATTACCTTTCAA 44921 35 100.0 34 ................................... GGGTTCTCCTTGAAGTCCTCAGGGTCAGTATCAG 44990 35 100.0 36 ................................... TGGCAAGCCAGCTGGTAATTACGCTCAGCTATAAAC 45061 35 100.0 34 ................................... TTGCTATAAAACTGTTCCATGGTTACTCTCCTAA 45130 35 100.0 39 ................................... CTCCAACCAGTTGCAACTTCATGATAGTTGCTGTTAGTT 45204 35 85.7 0 ..............................TGTTT | ========== ====== ====== ====== =================================== ======================================= ================== 10 35 98.6 35 CTTTTTTTATGATTCCCCGACTTGGGGACGGAAAC # Left flank : TCAGAATTTTTTCAGGAGCTTTTTTTCAAATACACACTGTGAACTACTTCTCTTCGTGCAATTCTCCGCACCTGTTAAGCTGGATTGAGATTGGGCGGATGTGGTAACATTTAACTACAGGATATTCTGTCTCTTATCCCTTATTCAGGCAGTTCTTGAGCCTAAATTATACGCATTGCTTTTTATACCTGTTTTGATAAATAGCAGTTTCCGGTGAGCTATGACTCCGGATGACATTAAAAATGTTTCGGGATCTCTGTCATGAAAAAATCTGGAGCACCTTGATTCGCTTTATGAGTATGCGTAATATATACAGGAATCTTTTATATGATACAGGAAACGAACAGGTCACTTTTGTTGACTGGTTTTGCCCCGATCATTGATTTATAAGGCTTGCTTTATGGTCACAAGTCTCGGTTCTTTAAAAAGTTCTCTTGAAAATTTTTTGCGCCGATCTTGCCCATATCAGCCCTTATGATATAAGGGATTGCGGAGGTGCC # Right flank : TGTACTATGCTAATCTCGCCAGTTGTCGGTACCTTGCCAAGCTGTTCCACAATCAGCTGGCTAAATTCTCTGCTGTTTGGCAATGATTTTGGTTATTTTTGAAGAAAGGCTGCGGGATACTTTGAAGAGTTCTTTCATCTCGTGAAGATTTGATATGCCCTGAATGACAGGATTCATTTTTCTGAACAATTGCTGTTACGTAACAGACTGAGAGAATTAGACTGTCACCGCTGGCAGATCGGGTTGTGTCCTGATAGTCAGGAGTGCCCTGTTTATATAATCCCCAGGCCCTTTGAAATCTCCTTCAAAGGTTCTTCCTTCTGGTATGTTATGCCCTCAACAGCCCCGTACATTTTACGAACTCCTGAGGTTGCGGTCATGATGTCATAAACATGGATGGGGCAAGGTCCTGATATCCAAAGAGGACACATTCCGGGATTCCGTATTCTTGCATTGCTGCCCAAATTCAGAATGTAAAAAAGAACTTGATGATAAAGAGA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTTTATGATTCCCCGACTTGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.30,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 36811-37433 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB899640.1 Succinimonas amylolytica DSM 2873 F557DRAFT_scaffold00005.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 36811 36 97.2 39 ............C....................... AACTCAAGTACCGGAGCACTTTCCTTTGTAACCAACATC 36886 36 97.2 37 ............C....................... TACAGCAAACTCGGTGATCTCAGGAGGAAGCGGAATT 36959 36 97.2 38 ............C....................... CCTAAAATCGTGAGTGATGTTGAAATTAACCATCTGTC 37033 36 100.0 37 .................................... CTAAACCATGAACAGTGTTGAGTTTTGCCGATGAACC 37106 36 100.0 37 .................................... CTAAACCATGAACAGTGTTGAGTTTTGCCGATGAACC 37179 36 100.0 37 .................................... CTAAACCATGAACAGTGTTGAGTTTTGCCGATGAACC 37252 36 100.0 37 .................................... ATAGTCGGCAGGATGTTGGAACCGTGATAGAGACGGT 37325 36 94.4 38 .........C..C....................... CTGGCTGCCCTTTCTAACATAGTCCCGCACGATTTCCG 37399 35 88.9 0 ............C.-....C.........G...... | ========== ====== ====== ====== ==================================== ======================================= ================== 9 36 97.2 38 GCCGCAAAGGGGTCAACCCTTTAGCGGTATTGAAAC # Left flank : AGTAACTTCAAATCCCAGATAGCGCCATTAGAACCGGGGAGTCACAGCATTAGCCTCCCCGGAAAACAGTATCAGAGAGCTATTTAGATACGTCTGTATGTTTTCAAATTGTAACATTGATATTCTGACTATAACCGGATAAAAGTCTCATTTAAATGAATATGTAGCCTGTTTCAAAATTAAATATCATAACTAATTCATGATTACTAAGATAAGTAATCTGATTTAAAGACTTATATTAAGCCATGAAAATGCGTAAATTTATAGAATAGTTATTAATACCTAAAAAATGAGTCTAAGGATCTTAAATGATGTACCGCATTTCAGTTTTTTGTGATGGAGATCGGGCACCCAGGTAATATTCTCCTTTTTAGGGGATCGGTTTTTTGAAAAAGTGGTAGAATTTTATGTAACAAAGATCTAACTGGAACACTGTCAGGATGTGATGTATTTTTGACACCGGTTGGGCCTTTGTGACATAATGGCCCCCGAACGGAGGA # Right flank : CCAGGTTGTCTTGCTTTCGAGCAGATCTGCGGCTTTCGTACGCAATGGGACTACCCCCCTGGCGGTTTAAATGTCTTTAAGGACATGAACGTATGTCAGGTGTTGTATCCTTGTTACTGCCACGTATATCTGCGTAGGGAGACTTGATGTTATACCTGATTTGAAAGCATTAGGCCTGTTCAGGTGCTCCCAGACCTTCTGCATATCAGTCTCAAAGAAGAAATTGGATCTTGCTGCCCTGTCTGTGATTCCTAAAGAATTTCTTCTTTCCTCATCTTTCATGCTAACAGCATCAAAGTAAATGACGGGATCTGTAACCTGTCTGACATAAGAATTGAGTACATTCCCTGAAATCCTGAAATTGATGGCAGTCTGCCGGTTAGCCAGCCCCTGATTCAGCTGGGATCATATGGCGATAATCTTCTCTGCCAGTTTTGGCAAATTTGACAATAAGCTCCAGATATTAAAGATAATCAGTGCATAAAGCATACCCTTCGCGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAAAGGGGTCAACCCTTTAGCGGTATTGAAAC # Alternate repeat : GCCGCAAAGGGGCCAACCCTTTAGCGGTATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.60,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : NA //