Array 1 3506-291 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKDR010000022.1 Neisseria sp. ZJ785 Scaffold21_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================================================= ================== 3505 32 100.0 34 ................................ TTCCGCAGCCGCATGACAAGGTCAGGTTCGTGGT 3439 32 100.0 35 ................................ TGTTACTTTGTGTGTCCCATTTTTGGGGGTAGGTG 3372 32 100.0 35 ................................ TCACGAATGTCGTTGTCGCTGCCTTGTGCCCGCTC 3305 32 100.0 34 ................................ TTGCCCAGTATTTGAAGGCCAAAGCCGCCAATGA 3239 32 100.0 34 ................................ ACGGCCACGGTAGCAGAGACCAGCTATGCTTATA 3173 32 100.0 33 ................................ TAAAACCGTTGGCGATAGAGCTTACAGATACGC 3108 32 100.0 34 ................................ TTCGTCTATCCATGCAATATCTGCCGTTGTGCAG 3042 32 100.0 34 ................................ CTATTCAAAGATTTGACAACCTGCTTTTGGGTAG 2976 32 100.0 34 ................................ TGCTGGTGCAGGAAGCCCGTCTGAAAGCCTTGTT 2910 32 100.0 35 ................................ ACGGAACTGCCTGTCTATCAGGAACATAAATCGAA 2843 32 100.0 35 ................................ ACGGAACTGCCTGTCTATCAGGAACATAAATCGAA 2776 32 100.0 35 ................................ GTTTGTTACCAACCACCACACACGGCAGGGGATAA 2709 32 100.0 35 ................................ ATTAATATATTAACGGAAGTATAAATAAAACAGTG 2642 32 100.0 35 ................................ GGAACTGACTGAGCAACACTGCCTGCAAGTCTTCT 2575 32 100.0 35 ................................ CCGAAGTAAACGACAAAATTATTCCGAACCTGCCC 2508 32 100.0 34 ................................ GCCGTCTCGGTGCGGATATACACCGCCTTGCGTG 2442 32 100.0 34 ................................ TTTAACAATTAGGAAAAACCCGCGTTACGTGGGC 2376 32 100.0 35 ................................ GACGGCTACGGGTTCCCCGGGCGTAACCGCCCGTT 2309 32 100.0 37 ................................ GATGTATACACATGCTCGGGTCGGTGCATAGACTGCA 2240 32 100.0 35 ................................ CGAGAACGCCGAGCGAAAAAGCGGAGATAAGCAAT 2173 32 100.0 36 ................................ ATACGGTTCTCGAAAGTGTAGATACTATCCTCCTGC 2105 32 100.0 34 ................................ TCTATGGACTTATCCAGCACTGCACTGTTCGGTA 2039 32 100.0 33 ................................ TCGGCGATGTGGTGCTGACCCGTGTCGGTACAC 1974 32 100.0 34 ................................ CAGTTGCCGTATTTGCTGTCGTAATCTTCCGGAT 1908 32 100.0 37 ................................ ACTGCCTTAGAATATATGCTTACCCAACAGCATGCTG 1839 32 100.0 33 ................................ AACCCATCAACAGTATCTGCGCAAAAGTGGTCT 1774 32 100.0 34 ................................ TGTAGTGTTGACCGAGACGAGTGGGTACACCGCA 1708 32 100.0 34 ................................ ACTTGTCAGACTGCCCTGCGGGTGTTCGGCGACC 1642 32 100.0 36 ................................ AGGTTGGTTGCGAACGGATACAAGGCGGCCAGTTCA 1574 32 100.0 36 ................................ CGCATAATCATAGCCTAGCAGTCCGCATAAGCTGTC 1506 32 100.0 36 ................................ TGCTTACCCAACATCCGCGCCTGATTGACAGCAACG 1438 32 100.0 36 ................................ AATGGAGTATCCTGTAGCCTGTGTTGACTCTGACAA 1370 32 100.0 36 ................................ GGACATAGCGTTTACTGATTTGCAAATCGCAAACGA 1302 32 100.0 35 ................................ CAGGTCAACCAGAATGCCTGATGAATGCCAAAAAT 1235 32 100.0 35 ................................ AGATTTGAATCCTCGTCATTCAGATTTGAATCCTC 1168 32 100.0 36 ................................ TCCATCAATCGATAACTGGCATACTTCTTGCCGCTT 1100 32 100.0 81 ................................ AGCAAGTGTGTGATAATTTCGTAGGGTGTCGGCTGTGTGTTGAAACTACAACTGCCCGAAATAAGTTAAAAGATTACGGAC 987 32 100.0 34 ................................ TTTACGGTACCCCTTGACGCTAGCCCACCCAAAA 921 32 100.0 33 ................................ TCGAACTCAACGCCATAGAGTTTAGTCAGTAAT 856 32 100.0 34 ................................ CTTTGCGGGAGGCTGTCTGAAAATACAGCCTTGT 790 32 100.0 34 ................................ GCAGGGTACGTTCTCTGTTGTTTGCACTGTCAAA 724 32 100.0 35 ................................ TATGGGCTTTTGTCCTCCATTGCTTTCAAGAAGAG 657 32 100.0 35 ................................ AAGATGCCGAAGGCCGTATTTACGCGGCCATGCAG 590 32 100.0 35 ................................ ACTTTTCTGATATTGCCTATTGTTGCAGCCATCTG 523 32 100.0 35 ................................ CACCGTTCGGATGGATAAACAGAAAAAGACCGCCG 456 32 100.0 36 ................................ ACGGATAAAATGCCCATGGAACCCGAATGGATAAGC 388 32 96.9 34 ...........T.................... CAGACATTGAATTCCGACACGATAAGCCACAATT 322 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================================================================= ================== 48 32 99.9 36 TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : AACAAGGGGAAATACTGTGCTGATGCTGATTACTTACGATATTGCTTTGGACGACCCGCAAGGCCAAGCGCGCCTGCGCCGTATCGCCAAACATTGCTTGGACTACGGCGTGCGCGTGCAATATTCGGTGTTTGAGTGCGATATTGCACCCGACCAATGGGTTGTTTTAAAAGAAAAATTGTTGAAAACCTATAACCCCGAAACCGACAGCCTACGCTTTTACCATTTGGGCAGCAAATGGCGGCGCAAGGTAGAACACCATGGCGCAAAAGCGGCGGTGGACGTGTTCCAAGATACGCTGATTGTGTGAATCGCTAACCTGCGGTGCTCATAAAAATGCGGGCAGGTTGGCGAAACAGGAAGGCTCTTTAACAATCAGGAACTTAGCAAAGCGTGTATGGCGGGAGAAGGCTGTGCTATACTCACTTTGCACCTCTTTCGGCGACTTTGGCGATTTAGGGCTGTAGAAGCATTGAGTGGTAAGGGTTTCCGAGGAGGCT # Right flank : CATTCTCCGAATAAAAGTATTATAGTTAATTAAAATAAAAACTACTCATTAATGCGGCCATAAAATTGCCTATTTCAGGCAGCACTTTTCGTAGATGCTTTTTAAGTAGATGCTTTTTAATGTTCGCCCATGCTTTTTCAATCGGATTAAGCTCTGGCGAATAAGGTGCAAGAGCTAAGATTTTATGCCCCTCTTTTTCTGAAATCTCTGCTAAAACAGACATCCGATGAAAGCGGGCATTATCCATCACGATAACAGATTGTTCAGTTAATTCAGGCAGCAATACGCCTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 29170-31319 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKDR010000014.1 Neisseria sp. ZJ785 Scaffold13_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 29170 35 86.1 30 A.......-.TT...T.................... ATATTTTGGCTTTTTTGATGTACCATATTT CT,A [29173,29176] 29238 36 100.0 30 .................................... GCATAGAAGCGGCACGGACGAAATCTTCAT 29304 36 100.0 30 .................................... GGTTCTACCGTGGCAATGGGGAGCGAATCG 29370 36 100.0 30 .................................... TTTAGCATTATCAGTTGACAACCGCGCCGG 29436 36 100.0 30 .................................... ACAAATCGTCTTGCATGTCGTCTGCGAAGA 29502 36 100.0 30 .................................... TGAAAAACGTATCGTACCCGTTCGAGTCGG 29568 36 100.0 30 .................................... CAGAGGTTGGCAAAATCTTCAATATCGCCC 29634 36 100.0 30 .................................... TGTTGATGAGCTTATAAAAGGTGTCGAAGG 29700 36 100.0 30 .................................... GCTACACCTCTGGGGATACCACTAAACAAA 29766 36 100.0 30 .................................... CGGGCGATGTTGCAAAAGTAGTCGTAAGGA 29832 36 100.0 30 .................................... TATCAGGATTGGCCGAAGCAGCCGGGCGAT 29898 36 100.0 30 .................................... TCAGGTGGTCTAGGTATCGAGAAAGTTCTT 29964 36 100.0 30 .................................... TACCATCGATTTCGCCTTTGAATTGTTTTG 30030 36 100.0 30 .................................... TTGTGCCATTTCCGGGCGGCATAGGACACA 30096 36 100.0 30 .................................... GAGACACAGTTTTTTTACTTTGGCCGTTTT 30162 36 100.0 30 .................................... TCAAGGATGTTACAAAGGCGAATGTGCCGA 30228 36 100.0 30 .................................... TCGTCTTGCTTACGCTCTTTAATAATCATC 30294 36 100.0 30 .................................... TGCTTCAATTCCCGTTCAGCCGATTCAAAA 30360 36 100.0 30 .................................... CAAATTACCGTCAACGGCGGCATTAATGTA 30426 36 100.0 30 .................................... TCAAATGCCGCAAAGCAGCACCTGAAGTTG 30492 36 100.0 30 .................................... CGGTGTCTGTCTTACAGTATTGCTTGTAGG 30558 36 100.0 30 .................................... TAAACTGATTAACCCCGAGCGTATGCCACG 30624 36 100.0 30 .................................... TAGCTATCAACGCAACATCTGTCCTGTCAA 30690 36 100.0 30 .................................... CCGACAACGGCGGTTACAGAAAGATTATCC 30756 36 100.0 30 .................................... TTTCAAGCAGCATTTGGGCGGACTCACCGA 30822 36 100.0 30 .................................... TTATGAATTCGGGCTTTTTGCCCTAGATAG 30888 36 100.0 30 .................................... AGACGGCATTCCTGAAGTGAATGGGGATAT 30954 36 100.0 30 .................................... GCTGCTATGCTTATACCTATTAAGGCTTCA 31020 36 100.0 30 .................................... CAATCAGATTTACCTATTCGGACCTTTCGC 31086 36 100.0 30 .................................... AGTACATCAGCAGTACCCATCAGCCAGCAG 31152 36 100.0 30 .................................... ATGTAAAAGGTTTATACGATGCATTCTTCG 31218 36 100.0 30 .................................... AACAGTATTTTTAACTGCTCTGACCGCATT 31284 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 33 36 99.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : ACCTGCCAGCGGCTGCCCACCGGCCAATCACGCAACTGATAATCCGACAACATCAGCCGATATTCGCCGCCATCTTTATCCCACACCTTCGCCGCAAACTGTACCCGCCGCTCATCACGACGCGGCAAATCGTCCACCACCACCGTCAACGCCACATCCTCCGCCCGCTCCAGCGGCCATTGCCGCCCCAACGCCGATTCCGTGCGCCATACCCCATAAGCCATACCAGACAACACACATAACAACACTGCCAATGGTTTCCAATACCAAGCCGCCAATAAAATTACCCCAAACACCGCAAGCCAAAGCCATAGCGGCGGCACCACAGGCAGCAGGAATGACACCAATACCCCGAACACCCAACACGGCAATACATAACGTAACATAAATTATTTCTCTTGTAATAGTTTTTATTATGATAAATTAGAAATAACGAATGTGCATAGAAAAAAGGCCGTCTGAAAGTTTTCAGACGGCTTTATGCTTGATTATTGATTAGA # Right flank : TTAAACCAAGCGAAAAGCCTTATTTGATAAGACTTTCCGCTTGGTTTTTCTAATTTAAAATCTTCTTAAAACAACAATAATTGGTCTGCATTGACCTTTTTTTCTTGTACTTTTAACTCTCCCAAAAGCAATTTCATACCGGCAAATTGCTTTTCTGTCACCTCTAAACAGCGTACAGAACCTTCTTCAGGCAAGTTCGCACACAACCTATTGTGGTATTTTTGCAACGAATCTCTACCTTTTACAATTCGGCTGTAAACGGATAATTGCAGCATTTGGTAACCATCTTTGAGCAAAAAATGTCGGAATTGGTTGGCCACTTTTCGCTTGGCTGCAGTGGTAACCGGCAAATCGAAAAAAACGATAATTCTCATAAATTTCGCCTCACTCATATTGATATGCCTTTAATGTTTGTAACTCAGGTAATTTCAAAAAACGAGCATTTTTTTGACTCAAGGCCGTCTGAAACGATGAAATCATTTTATCAATGGCTGCTAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA //