Array 1 17610-19977 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL989070.1 Vibrio cholerae HC-02A1 vcoHO2A1.contig.104, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17610 28 100.0 32 ............................ ATCGTCGTTTATTACGTAGGTCGTTGGCAAGA 17670 28 100.0 32 ............................ AACAAATACAGTCTCAATCTAACATTCTTCGG 17730 28 100.0 33 ............................ ACGAAAAGGTAAAGTTGCTAGCGGACAATGTTC 17791 28 100.0 32 ............................ TGTAAGCCCCATCGATAACATCGATGTGTTCC 17851 28 100.0 32 ............................ ATTACGACCGTTGGCCAGATGACATTGATGGT 17911 28 100.0 32 ............................ ACAGCAAGCCACGCTAGCCGGGGTGAGTGAAG 17971 28 100.0 32 ............................ ACCATGATTATGGCAAGGACAGCTACTATTCC 18031 28 100.0 32 ............................ AAGCAGCTTTAGCACTCGCAGAAGTTCGCTTG 18091 28 100.0 32 ............................ TTAAGCAACACACCTATAATTAAAAAATAGTT 18151 28 100.0 32 ............................ GGCAGATTCGAGCGCACCCCAGAAAAACTTAT 18211 28 100.0 32 ............................ CTTACGAGCACCACCATGAGAATGATTAGTGT 18271 28 100.0 31 ............................ TTAAATGCAAATGCCCGTTACTTACTGCGGT 18330 28 100.0 32 ............................ GCTTTGATAGCAACCGTTATGTCCATGCCCTT 18390 28 100.0 32 ............................ CTATAGATAACGGGTAAAACGCTTGGAAAAAC 18450 28 100.0 32 ............................ GCTTTCAGTCTCGCCACTCTCTCAGCTACCCA 18510 28 100.0 32 ............................ CATAAGCTTCAAAGCTTCGGTTTGATTCTTAC 18570 28 100.0 32 ............................ AGAGGAGGCGTTTGCCGAGCTGGGCGTAAATG 18630 28 100.0 32 ............................ ATATAGATCCGGTTGTGTTTGTTGCCTAGTGA 18690 28 100.0 32 ............................ AACAACGCAAACCATCACAACAGAGCAGGTAT 18750 28 100.0 32 ............................ CCTACCTTCTTGTATTCTGGAATTAAGTCATG 18810 28 100.0 32 ............................ ACTTGAAGAGGAGCTTATTGAGAAGCGCCATT 18870 28 100.0 32 ............................ AAATATACAAAGTCGTTCCTGTTTTGTTCTGT 18930 28 100.0 32 ............................ ATCCTCTAAATTTTCAACCGTTCCGTTATTAG 18990 28 100.0 32 ............................ GTTATATCGTTTGATGTTTGTCTCGACAGCTT 19050 28 100.0 32 ............................ AAAGCGATCAGAGTTTATGATGTGAACTTTTT 19110 28 100.0 32 ............................ TCGCTGAGCGATCACAAGAAACCAAAAACGAA 19170 28 96.4 32 ...........T................ TTAAGCGGATCCGTGGTAGTGGACTACCAAGC 19230 28 96.4 32 ...........T................ CAGAATCTTGCGGCTGTAAACATCAGCCCAGA 19290 28 96.4 32 ...........T................ CGCATCACCACAAGCTCTCTCTGTCTCTATAC 19350 28 96.4 32 ...........T................ TACCGCGTGACGCGTCACGCTAATTTTTGCGT 19410 28 96.4 32 ...........T................ ATCAGCAACAGCGCCGGGTATTCGCACTGCAC 19470 28 100.0 32 ............................ TGAGAGGGAATCAAGTTGTCTAGAGAATTAGA 19530 28 100.0 32 ............................ AAGAAGCGCGGTAGCCTGTAGCATTCATCATT 19590 28 96.4 32 ...........T................ TGAATCAATCACCGCAGCAAGGGCGGCTTTAG 19650 28 96.4 32 ...........T................ GTTTCTAAGGCTTGTCCTGCGCCCGACGTTGT 19710 28 96.4 32 ...........T................ ATTACTACTTTCTCGATGGTTCGTTGCTCAGC 19770 28 96.4 32 ........T................... AATACATGTTTGGCATCGCTAACCAGCTTTAT 19830 28 100.0 32 ............................ TTCTATGACATTCCCGCCATGAAGTAATTGAA 19890 28 96.4 32 ...........T................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 19950 28 85.7 0 ..........AT.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 40 28 98.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCTGGTGAAATCACCCGAGCGAATAGAGCGCGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGCAGCTTTGCAACAAAGCAAGCCGACAGCGTTGTGTACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAATTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTATAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //