Array 1 107826-106229 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXYD01000005.1 Salmonella enterica subsp. enterica serovar Heidelberg strain BCW_2830 NODE_5_length_178718_cov_4.57964, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107825 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 107764 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 107703 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 107642 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 107581 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 107520 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 107459 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 107398 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107337 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107276 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107215 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107154 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107093 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107032 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 106971 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 106910 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 106849 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106788 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106685 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106624 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106563 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106502 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106441 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106380 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106319 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106258 29 96.6 0 A............................ | A [106231] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125210-124084 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXYD01000005.1 Salmonella enterica subsp. enterica serovar Heidelberg strain BCW_2830 NODE_5_length_178718_cov_4.57964, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125209 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 125148 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 125087 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125026 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 124965 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 124904 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 124843 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 124782 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 124721 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 124660 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124599 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124538 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124477 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124416 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124355 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124294 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124233 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124172 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124111 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //