Array 1 890514-890725 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYYV01000001.1 Lactobacillus crispatus strain NCK971 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 890514 29 100.0 32 ............................. TGTTGGTATTAACTACAAGAGACACCACGGTG 890575 29 100.0 32 ............................. GCAAAAAGATCATGGGCACCACAAGGCACACC 890636 29 100.0 32 ............................. TATACAAATGGTTTCACCATCTAAAACTGCTA 890697 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTATTCTCCACGAGTGTGGAGGTGATCCT # Left flank : CGGTTTACACCCAACACCAGAAGATGCAAGTAATGATTGTTACTCAGCATCCACAGCATATTATTGATGGAATTCAGAATCGAATGCATCGTGGAATCACTATTTTGCACGATGCTGAAGGTGCATATAGTCATATTGAAAAGACAGTTTTGATTACCATTATTGATCGATATGATATGTATGATATTCGCCAAATCGTGCAAGGAGCAGATCCGTATGCTTTCATGAGTGTTAGTGAAGTTGAAAAAGTATATGGTCGCTTCAAGGAGCAAGAAATCGTTTAATGGATAGCCCTTAAACCTTGATATATAAGGATTTATAAATGAAATTTGAATCCTAGGGGCACTTTGGGAGCAAAACTATTCAAAAAGAAGCAGAAATGCTTCTTTTTTATTTGGAGTGGCTTTTTGTAATTATGGCTTTATTATTGGTCTTTGTTAAAAGTGATTAAAAATGATATTATTTCGATTGAGAGATGTTGATATATCGTGGATCATTTA # Right flank : TCCGACGGGGTACCCCGCGGCTGTCCATCATCGTATTCTCCACACATGTGGAGGCTAAATAGCTGCTCTGAAAAATATGTTCTATAGAGTGACTGTTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGTAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAGTTAAAGAGCAAAAAATATGAAGAATTATAAATTTAATAAGTTTATGTAAAAACAGTGTCATTAAGTTAGGCTATTGATTTTGGTGAAAAAACAATTAAAGCATCATTTGGCTTTAGACGGCCAGATTGATGCCTTTTTGGCATATTTTTCTAAATATCATTCGCGTTACACGTAAAAGCGTGTGTTGTATATAGTGAAAGGAGGCTAAGAGAATCGGAGCTAAGAGGTGACAAAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGAGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 2 893513-894580 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYYV01000001.1 Lactobacillus crispatus strain NCK971 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 893513 29 100.0 32 ............................. ATACCGATCGTCATTTTGCTCGTCTTGGTGCT 893574 29 100.0 32 ............................. AATATAAACTACCTTGGTGATGTTAAAGGTAT 893635 29 96.6 32 ............................C AATATGACTGGGGCTGGTCTGGTGCAGATAAG 893696 29 100.0 32 ............................. ATCCTTTTGTGGAGTTAGCGGAAACCGACAGT 893757 29 100.0 32 ............................. ATCTTGAAAATGTTGCACATCAATGTAGATTT 893818 29 100.0 32 ............................. GAACTTTTGGCTCGTGGTGTACAAATGGAAGC 893879 29 100.0 32 ............................. AAAGCAGTTAATGGCATTTGCATGCGTAACTA 893940 29 100.0 32 ............................. GCATCATGAACAACATTCGCATTTTCATTGTT 894001 29 100.0 33 ............................. TAATGGCTTATCTAAGGCACTTAAAGGAATTAA 894063 29 100.0 33 ............................. TTAGCTGGTGCCCACTGATTGGTTCCAAGCTTA 894125 29 96.6 32 ............................C AGAACACACCGCGACAAACAAAAAATATATAA 894186 29 100.0 32 ............................. TATTGATCCACTTGTGAATAATGAGGTCATAA 894247 29 96.6 32 ............................C CAATTGATTCTTTGCATATACCATCTCCCTAT 894308 29 100.0 32 ............................. CAGCGGTCACTTTTTACCATAAAGTTTGTGGG 894369 29 100.0 32 ............................. GTTCGCAATTGCGAATTGCTGATCGGGCTCTT 894430 29 96.6 31 ............................C ACAAAATCCAGGTACTACTTTAATCCATGGA 894490 29 89.7 32 ...........AC.....A.......... AACTGATTTAGTGGGTGCAGTTATGGATTGAG 894551 29 75.9 0 ...........AC.....A.TC..T.A.. | T [894567] ========== ====== ====== ====== ============================= ================================= ================== 18 29 97.3 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTCCATTATAAAAACAAACCAGATAAGTTCTGATTTTTATCTCCTCTCTTAATTCACCTAAGCTATTGTAGCTCAGCAGTTTTACGAGAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATGAGTATATGTGAATATGCTTTTGGTTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGCTAAAGTGTTTGGGTGAAATTCTTAATTGTGAGCAAGAAAGATTGGCAGACAAATAATATTTTTGTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCCAGCAGATATTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : TGTCCTGGAACGTACAGAAAAATAGCTGATAAACCGCGTCACGACGGCATTTGTTAGTGATTGAAAGTGTACTTTTTTCTTTCTGAACGATTGGAATTAGTACACTTTTTCTATTTAAAGCTGGCGGGTCGAGTGTTCTATGTCCTATTTCGATAGTCGAGTAGGCGAATGTCCAGTTTGACAGGTTCGATACTGGTCATGGAAGACGCTTTGACATTTGATGGCATTATTCACCAGTTGTTGGTCAATCCGGATACCACGATCATTAATGTTTTGATCCATCCAGTAGTTTTCCCATTCATTCTGCGGGACAGGAAAGCGTTCGAGCTTCTGAGTGATTTCCATTTTAACTTCGACGTCACGCTGATTGTATTGCTTGAATTGTTGACATTTATTGGGAGCATGGTAGGGGAAGTTACGAGTGCGATTTTGATTAGACTTCGTGGGTTTGCAAGGTGTGCAAAAGTAGCGAACAAGTTCCTTACCAGCAGTAATCTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 943645-943978 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYYV01000001.1 Lactobacillus crispatus strain NCK971 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 943645 29 96.6 32 .............G............... AAAAAGAAGCCACCCAAAAATTTCTGGTCGCT 943706 29 96.6 32 .............G............... AATGACATACCAGACCAGCTTAGAAAATATAA 943767 29 93.1 32 .............G..............C CATCACAAAACATAGTGAAGCAGTTACACCCA 943828 29 100.0 32 ............................. GTTTCCACATACCTTGCATTCAGCTGATTTAA 943889 29 100.0 32 ............................. ATCTCTAGTAGCTCCTACAAAAACATCAATAT 943950 29 89.7 0 .......................AT.G.. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.0 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GACGATTATTAGTAATGGTTAGTTCATTTTTGCTTTCACCAATTAGTTCACAAACAGTAGAAGTAGACTTGCTTACATCAATTCCAAAAGTAACTTGCATAATAAAAACCTCCAAAACTTAGTAGTAAAAAGTATTTACTTAAGAAATCAGATCTAATTTTCTAAACTCGACATCTAGTGTCCACATTCTTCGAAGAGACTATTGAAAACTTAAGTAAAACTGCCAGTTTTGTATACGACATCAAGTGTCTAAAGACCTCAGGGCATATCGTTTTACTACTACTTTAATTCTACAAAAGAATAAAAATAGTGAATCAATTATCCCGTCGGATAACTAATTCACTATTTAGCTTAGAATGTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACT # Right flank : TATATTGGGATTCCTGAAGAAATCATGAATGTAATTATACGAGACCACAAGGAAAAATTTTAAAATCTCAGGCTTCTAAAAAGCAAAAAGAAATTTTTAATAGTTGGCAGGAAAAATGAAAGAAAATATGTAAAGACAACTAAAATAATCAACAGAGCTGCTCTTGGAATATTTATTGTTGCAGTAGTAATTTTTTATTATAGGGTTAGTGAAGTAAAATGACAGTTAGTGAAGCACAAAAAAAGACGACTAAAAAGTGGGATACCAAAAACAAAACTCGAAAACAGTATTTAAATCGGTTACTAAAAATTTTATTTTGAAAGAAGCCACCACAGAGGACCTTGAACAAATTAAAAAGTATTTTGGGCAAAGAAAACACGGAAAAGATTGATTGTGGTAGAAAACGCTGCATGAATAATTGTAATTTTTAGTAAAAAGTTTTGGAGGTACTTTTTAATGATTGATTTAAATAGTTCAGATATTATGGACGCACAAGAAGC # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : GTATTCTCCACGTATGTGGAGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //