Array 1 276506-278125 **** Predicted by CRISPRDetect 2.4 *** >NZ_CHYR01000001.1 Streptococcus agalactiae strain DK-NI-015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 276506 36 100.0 30 .................................... CATGCCTTTGAAAATAAATTCCGAGCCATT 276572 36 100.0 30 .................................... ACTTCATTGATGTTTTGTTCAAATTTCTCA 276638 36 100.0 30 .................................... CAAATTATAGCTAAGTACCCAAACAGTATT 276704 36 100.0 30 .................................... CAATCCTTCTGCGATTTTCTTTTTATCTTC 276770 36 100.0 30 .................................... ATCGAGCTCTTGAGTATGAAGATTATACTT 276836 36 100.0 30 .................................... ATGGCTAATTATTGCGTGATGTTAGCGGTT 276902 36 100.0 30 .................................... CGTAAGCCAGTTCTTTTATTGTGTCTTTAA 276968 36 100.0 30 .................................... AAAATAACATCCCCTACTTTTAAGTTGATA 277034 36 100.0 30 .................................... AAAGTCATCTTTATTGACTGTTTTTCCTTC 277100 36 100.0 30 .................................... TTACAAAAAGTTTTTAGATTACACGCAAGA 277166 36 100.0 30 .................................... AAGACTTAAAATCGATTAGAATTGATTTTA 277232 36 100.0 30 .................................... AGACAAAGAAGATGGCAAGTCTATCAACAA 277298 36 100.0 30 .................................... GCTTGGTCTCGAAGAATTACAGAAGAACAT 277364 36 100.0 30 .................................... CAATTGATTGCCGTTAAAACCGATAGAGGA 277430 36 100.0 30 .................................... TGAATTCCACGCCACCAAGTAAACCTGTGA 277496 36 100.0 30 .................................... ACAAGAAACAAACAGCCTTGATGACTTAAT 277562 36 100.0 30 .................................... CAACCCTATGTTTGATAATATTTTAGACGT 277628 36 100.0 30 .................................... AAGTGAAGTTGAATTTTATTTGAGATACTA 277694 36 100.0 30 .................................... TAATACTTTTACAATATGTGTTTTCACTAC 277760 36 100.0 30 .................................... AAGTGCCACAGTTTGTGGCTGATTGGATTG 277826 36 100.0 30 .................................... CATTCAAGGACTACCCTCAACAGTAACTCT 277892 36 100.0 30 .................................... ATAATATATTATATAATAAATATAGAAATA 277958 36 100.0 30 .................................... TTCTATCTTCTGAAGATATTTCACAAGTGA 278024 36 100.0 30 .................................... TCTTCTTTTTAATTCTTCTAACACTCCATC 278090 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ACGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGA # Right flank : CATCTTCTTTTGACCTAACAAAAGGATATGTGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 63318-63744 **** Predicted by CRISPRDetect 2.4 *** >NZ_CHYR01000006.1 Streptococcus agalactiae strain DK-NI-015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 63318 32 100.0 35 ................................ ACAAAATAATAATTACCGTAACCAAGGACAAAGCC 63385 32 100.0 33 ................................ TTGACCAAGAACAACGAAAATCACTCGAAAATG 63450 32 100.0 35 ................................ TTCAAAGAAATCATCGAGTTCAATATCACTATAAG 63517 32 100.0 34 ................................ TGATATTTTGCTCAAGGTCTTTGGCATCCCATAT 63583 32 100.0 34 ................................ ATCATATCTCTATAATTTCCTTTCATATCAACGC 63649 32 100.0 33 ................................ TAATAATGATTATTTTTTTATTAATTCATTATC 63714 31 78.1 0 A....-.............T..A.T..C..C. | ========== ====== ====== ====== ================================ =================================== ================== 7 32 96.9 34 GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Left flank : CTAAAGCAATACGTGGTGATTTGGAATCCTATCCACCATTTTTAATCTAGGAGTAAAATTATGATGGTTTTAGTAACCTATGATGTCAATACGAAGACTGTAGCAGGTAGGAGACGCCTTCGTCACGTCGCAAAACTTTGTGTTGATTATGGTCAACGTGTACAAAATTCTGTTTTTGAGTGTTCAGTGACTCCAGCTGAGTTTGTGGAGATAAAAAACGAGTTGCTGACAATCATCGACCAGAAATCAGATAGTATCCGATTTTATTTACTTGGTAAAAATTGGCAAAATCGTGTGGAAACTATTGGCAAAAATGATAGTTATGATCCTGATATAGGGGTATTACTTCTATAAACATTTATATGTGAATTCGGGTCACACATGAAAAAGCGGAGTATTCGCGCTAAAAAAAAGAAAATAGTAGTCAAAATCTAGTTTTTATTGAACCAACTTGTTTAATAAATTCTTGGTTTTAGTTATAAACGGTGCAATCGCGCACT # Right flank : TATTTTAAATCTTTCAAATTATGCTATTAAAATTGTCTAACTTTTAACAGAGATGCGATTAAATTGTATTAATCCCTAAAAAGATAAATTGCTAGTTCTTATGCTATAATAACTCTATCAATGTCAAAGGAGTTTTTATGTCAAAGGTAAGGTATGGTGTTGTGTCAACGGCAAAGGTGGCGCCTCGTTTTATTGAAGGAGTCCGCTTAGCAGGAAATGGTGAAGTTGTGGCTGTATCGAGTCGAACTCTTGAGTCTGCGCAAGCTTTTGCCAACAAATATCATCTCCCAAAGGCTTACGATAAGTTAGAGGATATGTTAGCAGATGAGTCAATTGATGTGATTTATGTGGCAACAATTAATCAAGACCATTATAAAGTTGCTAAAGCAGCTCTGTTAGCGGGAAAACATGTGTTGGTAGAAAAGCCTTTCACCTTGACTTACGACCAAGCGAATGAATTATTCGCTTTGGCAGAAAGTTGTAATCTGTTTTTGATGGAG # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,1.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //