Array 1 491880-492052 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFUR010000001.1 Clostridium saccharobutylicum strain DJ094 Ga0423253_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================== ================== 491880 35 100.0 34 ................................... TGATAGTGCATTTTTGGGTTGTGTTGGTTTAACG 491949 35 97.1 34 .....................G............. GGCTTCTGCATTTACTTACTGTATGGGATTAACG 492018 35 94.3 0 ...........T...G................... | ========== ====== ====== ====== =================================== ================================== ================== 3 35 97.1 34 TCAATAACAATCCCAAACAGTATAACAAGTATAGG # Left flank : CAGCAAGTACTTCTTACAAATTTAGATTAGTAATGAATGATGCTTTTTATGGAAGTTCCCTTGATGTAACAACAGATGCAGGACAAGCACCAGGAATAAACAGTGTTTCAGTAACTCCAGCAACTTCAAGTGTAGAGCAAGGTCATACTGAACAATTGACAGCAACAGTAGATGCAACAGGAGGAGCAGATCAAAGTGTAACTTGGTCAAGCAGTGATACAAATAATAAAGTAACAGTAGATGCAAATGGTTTAGTATCAGTAGCAGCAGATGCACAGCCAGGAGACTATACAATAACAGCTACATCAACAGTAGATGGAACTAAGAAAGGAACAGCAACATTAACAGTACATGGATTTAAATTTGCATTAAATGGAAATGAGTGTCAAATAACTGGGTATACAGGGACAAGTACAGACATTACAATACCATCTCAAATTGGTGGGAAGAGTGTAACAAGTATAGGTAATTATGCATTTAATGATTGTATTAACTTAATA # Right flank : GGACTTCTGCATTTAGTTATATTAATAATGATGCAATATTCTATGTACCTGATTTGGCTAGAGCAGGATATGTTCAGTCATATAAGACAAATAGTAATAATATACAAATTATTTTGCCATCAGTTCCTTTAACGTTAGGTCAAAAAACAGCAACAACAGCAACAGTATCGTTTCCAGCACAAACAGGAGCGACTTCAGTAAAGCTGCAACAATCGGCAGATGGAGGAACTACTTGGAGTGATGCAGCAACAGGAGCGTTAGATGCTTCATCAACAAGTGCAACTGTAACAGGATTAACAGTAAGTACTTCTTACAAATTTAGATTAGTAATGAATGATGCTTTTTACGGAAGTTCCCTTGATGTAACAACGGATACAGCGGCAACGACAGCATACACAGTAGCAGCGGCGGCAGCAAGTTCATCACCAACAGCAGGAGTAGATAACGTAGTTACATTAACTGTGAAGGATTCAACTGGCAGCACAGATACAACCTTCACT # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAATAACAATCCCAAACAGTATAACAAGTATAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 2209989-2212107 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFUR010000001.1 Clostridium saccharobutylicum strain DJ094 Ga0423253_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2209989 30 100.0 36 .............................. CTCAACTGACTAAATGTAAAATCAGAATACCTTGAA 2210055 30 100.0 34 .............................. TGATGAAATATGCACTAAGAGGATTTGATTGATA 2210119 30 100.0 36 .............................. ATAACAACTAAAGTCTGATGTTCTTTACCCAAGTCA 2210185 30 100.0 36 .............................. TTGATGGAACAATGGGCAATTGATTTAGGATTAACC 2210251 30 100.0 35 .............................. AGTATAAATACGTTTCATTCTAATAATAGTTACGT 2210316 30 100.0 37 .............................. GATATTTTAATATTTGCGATTCTTATTTTCTTTATGA 2210383 30 100.0 35 .............................. ACGAACTGAATTACCTGACCTTACAAAAGTGAGTC 2210448 30 100.0 34 .............................. ATTCTATTCTCTTGAGTTTTATCTATTTCTAAAT 2210512 30 100.0 36 .............................. ACAGAAAAAGAAAATCCACTAACAGAGCAACCATAA 2210578 30 100.0 35 .............................. TATGTTTTATCATATGTTCAACCTCACTTTTACTA 2210643 30 100.0 35 .............................. CTACCACTTTTTGTATAACATATAGTAACATGAGT 2210708 30 100.0 36 .............................. AACATAATAATAATTTCCTCCTTAAATTAAATTTGC 2210774 30 100.0 35 .............................. GCTAATTTTAAATAAATATCAACATTTCCGGAATA 2210839 30 100.0 34 .............................. TTAGGAATTACCATGTAGAATTTACCACCATTAT 2210903 30 100.0 36 .............................. GTTTTAGTATCAGTTTTAGTGTTTGTATCAGTAAAA 2210969 30 100.0 36 .............................. AAAGCTTCTTAAAATCTACTTAAATATGCCTACCTT 2211035 30 100.0 35 .............................. ATATAAAAGGTCAAGATGGAAAAATTAACTGTTGG 2211100 30 100.0 35 .............................. TTCTGATAATGTTAAGTTTAAGTCTGTTGCACAAG 2211165 30 100.0 34 .............................. GAAGGAGCAGGGTCACTTGGATTATCAGTTTTCG 2211229 30 100.0 36 .............................. TACATTGATTTAAAAGATGATGAAATTAATATAGTT 2211295 30 100.0 35 .............................. CTCATCATTTATCACCTCTCTATTTTAAATACTTT 2211360 30 100.0 35 .............................. TTTGCATCGAATCCAAGTTGAGTAAATCCATCTAT 2211425 30 100.0 36 .............................. TGTAGATAATAGTTTAGTACGAGCAAAAAGAATAAA 2211491 30 100.0 35 .............................. TTCCATCTATTTGTAATACACTAGCATTAGCTGGA 2211556 30 100.0 36 .............................. ATCTACAATAGATAACTTAAGCCCAAGTAACTATGT 2211622 30 100.0 34 .............................. TTGTATAAAAAAAAGAAGACTAAAACAAATCAAA 2211686 30 100.0 37 .............................. AACCATAAGATACCTATGTATCCAAAAGGCGGTTTAA 2211753 30 100.0 35 .............................. GCAGTAATTACACTCTTTGGTAATAACTTTAACCT 2211818 30 100.0 36 .............................. TTATTTGAAATATCTATACCTTTCATTATTCATCTT 2211884 30 100.0 34 .............................. TATTTAATAAGCTTATCTATAACTGGCTCAAAGT 2211948 30 100.0 36 .............................. AAATTAGCCAATATAGCAAACAGAAAAGGAAGAAAT 2212014 30 100.0 34 .............................. AGTAAGCCATGGGGTAGCTACAGAGTAAGTGTAG 2212078 30 96.7 0 .................C............ | ========== ====== ====== ====== ============================== ===================================== ================== 33 30 99.9 35 GATTAACATTAACATGAGATGTATTTAAAT # Left flank : AATTCATTCCTTTTAGTTTAAAGGAGGGAATGTAGTGAGTAAAGTTAGTAATTATAATTATGCTTTTGTATTTTATGATGTCAATGAAAAACGAGTACAAAGGGTTTTTAAAGTTTGCAAAAAATACTTATCTCATTTTCAAAAATCAGTATTTAGAGGAGAAATGTCTCCTTCAAAGCTAATAAAGTTTAAAACAGATTTAAATAAAGTTATTGACAAAAATGAAGATTTCATTTGCATAATTAAGTTAATGAACGACAATGTATTTGGAGAAGAAGTATTAGGTGTAACATCGGGAGCAAATGGTGAGGATTTAATAATATAATTTACCAGGCAAAAACAAATTTATATCTACGAAAAACAAGGTGTAATGCGGATTAACATAAATATATTTAAAAAATTAATTTAAGTTGAGGGTGCTTGGTAAATTTTTAAGGATGTGTTACACTAACTATAATGAAAGCATTATCTTAATATAAGAAGTGGCTTTTTTCTTAGGG # Right flank : TTTATCTAAAACATACTTGTGCTTTGTATAATTTAAAGACTAACATTAACTATGATGAAACCAATTGTAAAAGACATATTGTTTTTAGCATAAAAATCAGAAGAGGCAACTGAAAATGTATGGTAGTAATTATGGATTTAATAGATACATTAAGAGTAAGCTTAGAGAATTTAGGATTTAAATTTACGTAAAATTATGAATTAAAAAATAAATAGCAAATTATAAAATCGCATTATTCAAGAATGAAACAGCAACCTTTTTAATTTATTGCGTCAGTTGCCTTGTATTAAGAAAGGATGCATTTGCAATTTGGTAATATTACGTTATTCGTTACATGGAAAGTTTACAATTATTTACACAACATGTAGACTTGGCGCGGTAAACAAACATTGTTCTTTGATAAATAAGCACTATAATATTTACAAAATATGCTATAATTGATTGAAAGATAGTAATTTGTATGAGCGATTATATGAGGAGATGTATTATGATTAAAAATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 2777800-2776658 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFUR010000001.1 Clostridium saccharobutylicum strain DJ094 Ga0423253_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2777799 30 100.0 36 .............................. AATAGAACTTGCTAAAAGGTTAGGAGTTGCTAAAAG 2777733 30 100.0 36 .............................. AATTAAGTGATGAAAGAATAGAAGAAAAAGAAGTTG 2777667 30 100.0 35 .............................. GAAGGTAATGAAAGCATTTCACTCAACTGACTAAA 2777602 30 100.0 35 .............................. GCTAGTAATGAAGATGATGATGTAGACACTACTAA 2777537 30 100.0 36 .............................. ATAGGTGATAAGGATTATTCTATTTCTAGCAGTTGG 2777471 30 100.0 34 .............................. TGTTTTCCATCCATTTCGTACTCATTCGAATTTA 2777407 30 100.0 35 .............................. GAAACTTTTTCTTTTTTATTTTTAGATTTAACGCT 2777342 30 100.0 36 .............................. AGAAATTTTATACACATAAGTTCATTCACTTCAAAT 2777276 30 100.0 35 .............................. GATTTAATGGAAATTTAGATGAACTTTCTGTATTA 2777211 30 100.0 36 .............................. ACTAGTGAAACTGCCATCAATACTTACATTGAATTC 2777145 30 100.0 36 .............................. TTAAATAATTATTAGAATTAGATATACTACTAGTTG 2777079 30 100.0 35 .............................. GCAAATGGAACAGATGTACTTGATGAAGAATATGA 2777014 30 100.0 35 .............................. GCACATTTATTCAAAACCATTTGTATAGCATTTTT 2776949 30 96.7 35 ..C........................... TGACCTACTACGTTTTCATGACTCCCCACCATGAT 2776884 30 96.7 35 ........C..................... AGTGCTGTAGACATTTCCCCAATTACTAAAAGAAT 2776819 30 100.0 36 .............................. TTGTCTAATTTTTTTATTCCTGGTATTTCAGTTATT 2776753 30 100.0 36 .............................. AAATTATAAGCATATACAAGTGTATTTGTTTTTCCT 2776687 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 18 30 99.6 35 GTTGAAGATTAACATTATATGTTTTGAAAT # Left flank : AGGGTGTTGAAACACAAGATGTTTCCTATATATCTACTTTGGATAGCTTGTTCTTAAAAGATTGTGTTAATATAAAAAAATTAATCAAACCTAATGGATTTAGACCTGTTAAAGCAGCACCAAGCTGTGGTTTAGAAAAAATGCGAGAATATGTATACCAAGAGTTTTTACCATATGCTTTGGAACCTAAGTTTAATACATATGATACTAGAAAATTTATTTGTACTAATAAGTCTATAGAGGTTAATGATAAAGAATCTATTATCTATAGTATTAATGATAAAAATCTATTTTTCTATTAAAAAGTAACAAGTATACAAATAATTTACCAGGCGATTTTAATAAGTAATTTGTAGCGAAATATCTATTTTATGAGCTTTTACTATTTTAAGTATTATTGTATTTAATTTTATAAAATAGCTGGTAAAATAATATGCAAATGTAGGTGAATGGCTGGATTAAAAGATATTAATATATATAGAAATGACTTATTTACTTTG # Right flank : ATAGATACAGTCCAACTAATTTAATAAAAATAAAAAAGGAAGAAGAGAATTTATGTATTTTGAAAATATAAAAATTATAGATATATCTACGTTATTAAAAGAGCCATCTGATATATATTCTCATACTAAGAGTGACATTTTAGAATATGAAACTCTAGCTGAGCATAATGAGCGGTGCATAAAATATTTTTATAAGATAGTAGATGTAAAAAATCTAGATAGTGTATTTAATAATTTTGAACAAAGACTATTAAAAGGCTGCTCAAGTAAATGCATTAATTTGTGGAAGGAAATTGTATTAAATACTGTATTTTTCCACGATGTAGGTAAGAGTAATCCTGGTTTTCAAAAAGAAAAAATGAAAAATGAAAAGTATAAAAATATAAAAGTAAATAATTCTAATCATTCCCGTGCATCAGGTATAGTTTTCTTTAATCATTATTATAATGAAGTATTTGCTGTTAATAATGATGAAGCTAAGGTGTTATTTGTTTTCCTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGATTAACATTATATGTTTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //