Array 1 45970-47463 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPWX02000016.1 Kocuria rhizophila strain RF contig16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 45970 28 100.0 33 ............................ CACCGGGCCCACCATATTGGGGTGAGGTGCCGG 46031 28 100.0 33 ............................ CCCACGGTGGAGCAGATGGGCGACGGAAACCGG 46092 28 100.0 33 ............................ CTCCGAAGACCCCTCGACTGCCTTCTAAGGAGA 46153 28 100.0 33 ............................ GGACAAGGAAACCACGTGGGACGTGATCCACGA 46214 28 100.0 33 ............................ GGACGGTGTGACCCCGGGCAAGGTCACTACCAG 46275 28 100.0 33 ............................ CGATTTGACCACCAGGGCAGCCTTCGCCGCCAC 46336 28 100.0 33 ............................ GCAGATCGAGGCCGAGTCGGACACGGACACGAA 46397 28 100.0 33 ............................ CTTCGCTTCACCCATTTCTTCCAGGACCAGGGA 46458 28 100.0 33 ............................ GTCCTTGATGGAAGTCAGCGCGTACGGGTGCCC 46519 28 100.0 33 ............................ CGTGCCCGACTGGGCTTCAACTTTGAGGAACTG 46580 28 100.0 33 ............................ GGGTGGTCAGATGGCCAACGACTACAAGGCTGA 46641 28 100.0 33 ............................ CGAACTCGTTCTCCACCCATTCCACGTTGAGGA 46702 28 100.0 33 ............................ CGAGCTCAACCAGCACGGCGTCAACGGCATCCA 46763 28 100.0 33 ............................ CCGTTCGAGGTCGTGGGTGAACGTCTTCCCGCC 46824 28 100.0 33 ............................ CGTGGAGGTCACCGGGGAACTCGCGGCCCGGGT 46885 28 100.0 33 ............................ GTACGGGACGAAACCGGTACGGGTGTTCACCCG 46946 28 100.0 33 ............................ GGACGGGGTGTGGGTGTGCGAGCAGCTGCACCT 47007 28 100.0 33 ............................ TCGGTGTCCGGGGCCGTGTGCCCCGCCAACAAC 47068 28 100.0 33 ............................ TGAGGTGACCCTGCGGGGTTACGTTCGGAAGAT 47129 28 96.4 33 ...........T................ CCCGTTGGCGCGAGCCGCGAGGCTCACCAGCCA 47190 28 96.4 33 ....G....................... GCACATGGACTCGAAGGCCGGCAGCGAGGCTGA 47251 28 100.0 33 ............................ CAGGTAGCCGGCCGCGTAGTAGGGCTGCAGGAC 47312 28 100.0 33 ............................ GAGCTGCTCCGGGTTGGCGCCGTTGCCGGAACC 47373 28 100.0 33 ............................ CCACGGGTCCAAGGGCCTGGGGGCGGCTCCGGT 47434 28 96.4 0 .....................G...... | TA [47458] ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.6 33 GTGCTCCCCGCGCCTGCGGGGATGAGCC # Left flank : CGACGACGCCATGTCGCTGTGGTCCGGTCGGCATGAAGACCGCATGCCGACGGGGCAGAACTTCTCTCGGGAGAACTCATGATCGTCTTGGTCCTCTCAGCCTGCCCGGTAGGGCTTCGTGGGGACCTGACAAAATGGCTGTACGAAGTCTCTGCCGGAGTTTTCGTGGGTAAAGTCAGCGCGCGGATTCGGGAGCACCTGTGGGAGCGAGTGCTGGAGTCGTCTGGCTCGGGGCGGGCCATCCTCGTGTGGCATGCCAGGGGCGAGCAGGGCTTGACGTTCTCTGTCAAAGACCACCACTGGGAACCGGTGGACCTCGATGGGGTGACCTTGATGAAACGCCCCTCGCGCACCAAACCCCGATCTTCTCCCGAGCTCAGGCCGGGGTGGAGCAAAGCCGGTGCTCGTCGCAGGTTCGGCGGCAAAAAGACCTGACCGCAAAAGTGTCGAAGTCAAAGGAAAAACGCCCCTCGGGGGACAATAACCCCTAGTCACCAAGG # Right flank : CCTCAAGGGCTGCTGAACCTGACCGTGAAACTGCGTCCTCGCCACAGAGGGTCAACTGCAAGGGGCACGCCATCTCCGGTCAGCGTGAAGCGCCCCCCATCAGGCTCCTCAAGCAATTTAGTTGTGGACAACAAAAACGCACGTAACTATGCTCTGTCACGCCCGCTCACCGCAGCAGCCGATCCCCCAGGCTGCACATCCGGGCGGCCAGGGACCGCTGGCGTGGGCTCTGGGTCACCAGCGTCTGCGCGCGGCCTCGGTTGTGGCGGGTCTCGACACTTGGGGGGTCGAGACCCGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //