Array 1 146111-146931 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCTG02000003.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0316 NODE_3_length_350961_cov_46.192364, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 146111 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 146172 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 146233 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 146294 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 146355 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 146416 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 146477 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 146538 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 146599 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 146660 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 146721 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 146782 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 146843 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 146904 28 79.3 0 ...........C...A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 163572-165432 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCTG02000003.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0316 NODE_3_length_350961_cov_46.192364, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 163572 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 163633 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 163695 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 163756 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 163817 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 163878 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 163939 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 164000 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 164061 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 164122 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 164183 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 164244 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 164305 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 164366 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 164427 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 164488 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 164549 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 164610 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 164671 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 164732 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 164793 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 164854 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 164915 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 164976 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 165037 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 165098 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 165159 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 165220 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 165281 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 165342 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 165403 29 93.1 0 A...........T................ | A [165429] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //