Array 1 9117-11654 **** Predicted by CRISPRDetect 2.4 *** >NZ_WVUH01000236.1 Micromonospora echinofusca strain MPMI6 NODE_236_length_11770_cov_13.972, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 9117 28 100.0 33 ............................ CAGGGGCGCCCCTTCCGGCGCACTTCGGTACTG 9178 28 96.4 33 ....C....................... CCCGCCAGATATCCTGACCGACGATCTCCTGAT 9239 28 100.0 34 ............................ TTCTCGGAGAATCGCTGGCGTGCGCGGGCGTCAG 9301 28 100.0 33 ............................ CGATGCCCGGTTGGCAGTCTGTGAACAGCCATC 9362 28 100.0 33 ............................ TCGTCGGCAGGTGCCGTAAGCGATTTTGCGACA 9423 28 100.0 33 ............................ GGACAGCGCCTTCCGGATGATGACCATCCGCCG 9484 28 100.0 33 ............................ GGTGCCCACGTCCAGGGCGGCGGCGTCCAGGGT 9545 28 100.0 33 ............................ TTCATCCATCGGGATCGATTCAAGGGCAGGGGC 9606 28 100.0 33 ............................ GGCCGCCATGATCGCCAGTAAGGGACTCCGCGC 9667 28 100.0 33 ............................ GTTCGGTCGTGCCTTCGAGTCCGCTCACAGTCC 9728 28 100.0 33 ............................ CCTGGCGGCTATCGCCGGACAGACCGGCTGGTT 9789 28 100.0 33 ............................ TGCGAGGTGCTGTGCCATGTCCCGGCGCCACTG 9850 28 100.0 33 ............................ TAGGGAGTGACAGTCTCCGCGTCATAGCTGTCA 9911 28 100.0 33 ............................ CGGACGATTCTCGGAGGCAATTGCAAAGATCCC 9972 28 100.0 33 ............................ CGAGGGTCCTGGTCGAGCTGGGCGGCCTGCCCA 10033 28 100.0 34 ............................ CACCGCCAACATCGGGGTGTGCGTGATCGGCCCC 10095 28 100.0 33 ............................ CGTGTCGGGGTCCATCGGTGGGGCCGGGGCCCA 10156 28 100.0 33 ............................ CACCACGAGGTTGCTCGACATCATCGAACGGCA 10217 28 100.0 33 ............................ CTTCCTGGTCAACAGCAAGACCGGACAGATCTA 10278 28 100.0 33 ............................ CCGCCGGATGAGTCTGGACCAGGTCACGCGCAC 10339 28 100.0 33 ............................ CGCCCCGGGTGGGAAAGTCAAGGCATCCGTTAC 10400 28 100.0 33 ............................ CAGGCGTTGATTGCCGTGGAGACGGGGAACCGT 10461 28 100.0 33 ............................ TCCGGCAGATTTGCATGGTCGGGTTGACCGTTC 10522 28 100.0 33 ............................ TTGGATTGGCATTTCCCGGTCCGGTGACCTGTC 10583 28 100.0 38 ............................ GGAACAGGTTGCCGGTCGGAACGGCGTCCCGATCCAGT 10649 28 100.0 34 ............................ AGTCGGCCCGACTTGATTTGAGGTAAAAAAAGCC 10711 28 100.0 34 ............................ CCTGGTGACGGACCATGGTGACCAGTTCTTACCA 10773 28 100.0 33 ............................ CACCAATGGCGGCCCCGGGAATGGGTGGGCGCT 10834 28 100.0 33 ............................ CTCAGGGGCCGGCTGACGCAGCTGGTACCGCTC 10895 28 100.0 33 ............................ GACGGAGTTGCCGCCGGTGCCACCCTGGGAGTA 10956 28 100.0 33 ............................ TCATGTACGGCGACCGCGACTAACCGACCCCGA 11017 28 100.0 33 ............................ CCACGCGCCCCAAACCTCGGCGACGGTAGGCAA 11078 28 100.0 33 ............................ CGCTCGCCGTGTGGCGGGCGCTGCCCCGGCTAC 11139 28 100.0 33 ............................ CCGGAGCGTCCTGGCGTGCCCGGTCGGCCCGGT 11200 28 96.4 33 ..................T......... CAGCCTGGTGGCGAAGCTGGACGCGGTGCTGTC 11261 28 100.0 33 ............................ CGAGCGCACGGAGCTGTACCCGACCACGACGCG 11322 28 100.0 33 ............................ CTGCTCGCCCGCGAGCTGGACCGGCCGGCAAAC 11383 28 96.4 33 ......................C..... CGACTGCACGTCGATCGACTCGGTCTCCCGGTC 11444 28 100.0 33 ............................ CTGGTTCGGCCACTACGGGCCGACCGGGTGGCA 11505 28 100.0 33 ............................ CTCGCGCACCCGGAACCGGCGGCCGGGCAGTTC 11566 28 100.0 33 ............................ CGATGGCGGCATGGTCCGCCGGCTGAAGGAGAT 11627 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================== ================== 42 28 99.7 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : TCTGGGACGACACCGGGCCGGAGCAGGCCAGCGGACGCAACTACGGCGGCGGCGAGGTGGACTTCTGATGACCGTCATCATCCTCACCGCCTGCCCGGACGGCCTACGCGGCCACCTCACCCAATGGCTGCTGGAGATCTCCGCAGGCGTGTACGTCGGACACGTCAACAGCCGAATCCGGCAACGACTCTGGAGCAAGGTCATCGACATGGCCGGCCCCGGTCGCGCGCTGCTCGTCTACCAGCAACCGGGGGAGCAGCGACTCTCCTTCCAGGTCCACGACCACCACTGGGAACCCGTGGATCTCGACGGCATCACCCTGATCCGCCGCCCCACCGGCCGCAAGCCCTACAATCCGGCCGTGGCCGTAGGCTGGAGCAAAGCATCGAAACGTCGCCGGTTCGGCAGACGGCCGTCAAGCCCGACCGGCTCGATGGTGCCTCTGAAGCAAAGTGATGAAAACAGTGGAAGTTGATCTCTAGCGCCGCAGGTCAACAAGC # Right flank : CGGGACCTGATCAGACAGGCCTGTCAACGGTCATTTGGATCGCCGGGTGGGCGGACGTTGGGCATCCGGGTGGGCGGACAGCTTTTCTCCGGGTGGGCGGTCACGAGATCTGGTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 1 1583-636 **** Predicted by CRISPRDetect 2.4 *** >NZ_WVUH01000619.1 Micromonospora echinofusca strain MPMI6 NODE_619_length_1726_cov_21.838, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1582 29 100.0 32 ............................. GGGACCTGATCAGACAGGCCGTCGTCGCGAAG 1521 29 96.6 32 ............................G AGCTGTTCGACGCAGCGGTGCTCAATGCGTAC 1460 29 100.0 32 ............................. GACTCACCAGGCCACGGCTTGCGCAGCAGCGC 1399 29 100.0 32 ............................. TCAGGCTCGGTCACGGGCGGCTGGGAGTGCAC 1338 29 100.0 32 ............................. AGCATCAGCAGTTCGTTGTGGAGGATCCCGGC 1277 29 100.0 32 ............................. CCCAGACTCTGCGTCCACTGGGCGACGTGAAA 1216 29 100.0 32 ............................. ACGTACAACCACCACGAGCGTCCGATCAAGGG 1155 29 96.6 32 .................A........... TGGGCGGTGCCGGTGGTACGGCGTGCCGGTCG 1094 29 100.0 32 ............................. GGCGACGAAATCTATTTCGGCAGGCTGATGCC 1033 29 100.0 32 ............................. TGGACCTTCCCGGACGCTCAGGCCGGGGACTT 972 29 100.0 32 ............................. GATTCAATCGCTGCGTCAGGGTCCATCGCGTG CGC [960] 908 29 96.6 32 ............T................ AACTGGATTCGGATAGCCAAGGTCGGTGTCGG 847 29 100.0 32 ............................. ACGACGACGGAAGCCATCGCCGGCTACCTGCT 786 29 100.0 32 ............................. CCGTTCCGCTACTCGACCGGTGGGGACGAGTT 725 29 82.8 32 ............T.T...T........TG GGCGCTCCGTCCACGCCAGCAGCTCGACAGCG 664 29 89.7 0 ....G.....G.................G | ========== ====== ====== ====== ============================= ================================ ================== 16 29 97.6 32 CTGCTCCCCGCGCACGCGGGGGTGATCCC # Left flank : CGACGCGGGGACCACCTACATATCGGGGCGTCATCCACCGATCTCGTGACCGTCCACCCGGAGTTCTGCTGTCCGCCAGCCCGGAGACAAATGTCCGCCCACCCGGATCATTCCCTGGCCGCTGACAAGGCCGTCGTCGCGAA # Right flank : CTAACCCGATCGGCCGCTTGCGCGGCGGAGCCGGGTGAGCACGTCGGCGATCTCGCGGGTCTCCTCGTGGTGCGGCCCGTAGACGAGCGCGAGATCCTCGTGCAGCGGTACCAGCTCGGCCACCGCCTGGTCGATGTTGCCTTCCGCCAGCAGAAGCATCGCGATGTTGCGGCGCAGCTCCAACGCCTCGGAGGACACGTCGCCTTCGGCGGCCCGGATGTGGTCGAGCACCTGCCGGAACTGGCGTAGTGCGACGGTGGCCTGGCCCAGCTCGGCCCGGCAGTGGGCCGCCTGACGCAGGCAGGCCAGGGCGTCGTCGCTGGTAGGCCCGCCGGTACGGGCGAATGCCGAGTACAGTGCGTCGAATTCTGGTAGCGCCTGGCGGAAGTCGCCGCCGATGACGAGGATGGCGGCCCGGCGTTGGCGGAGCGCGAGGACGCGGGGGCTCTCCACCCCGAGGGCGGCTGCCGCCGGCTCGATGACCTGCTTCAGTGCTTCCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //