Array 1 887890-888817 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015567.1 Pasteurella multocida strain USDA-ARS-USMARC-60675 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 887890 28 100.0 32 ............................ TTCCGATTTTTGATAGTCAAAGACTACTGAGT 887950 28 100.0 32 ............................ AAACGGTCGTGCGTCGTTCGGGTTGTGATCTT 888010 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 888070 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 888130 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 888190 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 888250 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 888310 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 888370 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 888430 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 888490 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 888550 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 888610 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 888670 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 888730 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 888790 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.6 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2214201-2211292 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015567.1 Pasteurella multocida strain USDA-ARS-USMARC-60675 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2214200 28 100.0 32 ............................ ACTGGTAGCGCGCCAATACTCTGTATTTTTCT 2214140 28 100.0 32 ............................ TCCATAAGGTCGCTTGTCGCAACCATTATTCT 2214080 28 100.0 32 ............................ TTATCCGTCACCTTCACCATGTCGTAATGCAC 2214020 28 100.0 32 ............................ GTCGGAGCTTAGGACGGGGGAGAGTATCGTGT 2213960 28 100.0 32 ............................ TTTTGAATGCTCATCACGCATTTGTTGCAACC 2213900 28 100.0 32 ............................ ATGACTGCCGCGCTTGATAATTGCAACAGCAA 2213840 28 100.0 32 ............................ TTCGTCCGTAGTTACAAACAGCATAGCTCTGA 2213780 28 100.0 32 ............................ TCTATATATTGTTTTTCATTGGGCTTGGTCGG 2213720 28 100.0 32 ............................ TCCAAGCGCGAGGAGGGATAACCATAGGCATA 2213660 28 100.0 32 ............................ AACAGCTCACCTTGGGGAACCACCTGAAAAAC 2213600 28 100.0 32 ............................ ATATCCTCACCGCTATAATGTGGTAAATCTAA 2213540 28 100.0 32 ............................ ACTACGGGAAATACCCAAATATCCTGCGGATT 2213480 28 100.0 32 ............................ ATATCCTCTACTGTTAATTAGTTGATTATTTA 2213420 28 100.0 32 ............................ GCGACCAATCAGGGACACTCGTATCACAGAAG 2213360 28 100.0 32 ............................ TGTTAGCTCACCGAAGCTACCCAGTGCACCAT 2213300 28 100.0 32 ............................ ACTACAAGCCAGCGACGACAGTTATAATTTTA 2213240 28 100.0 32 ............................ AAATTAATAAAATTGTTGTGCGATTGCGTGAG 2213180 28 100.0 32 ............................ ATTACCCCTACAAAACGCATAACATTGTTAAA 2213120 28 100.0 33 ............................ CAGGAAAAAAACCGAAGTATTTAAGAGATTTCA 2213059 28 100.0 32 ............................ ATTTACCCCTTCAATATCGGTTGTGTATTTCA 2212999 28 100.0 32 ............................ CGTTGAAGAAACCTCCACGCCTTTAAAATCAA 2212939 28 100.0 32 ............................ TTTGAAAACCCGGTATTTTGATTTTTCTCAAC 2212879 28 100.0 32 ............................ ATTTATCCCAAAGCGACATGTCATCAGGCATC 2212819 28 100.0 32 ............................ CATTTGGGGCAACGAATGACGAAAAGCGCACA 2212759 28 100.0 32 ............................ TCTTTCCGTTTATCTTTGAAAAAATATCATAT 2212699 28 100.0 32 ............................ GTTTAGTAACGGGTCAAGCGGAAGATGAAATC 2212639 28 100.0 32 ............................ AATCTTGCCGAGAAAATCGCCGAAAGAGAAAG 2212579 28 100.0 32 ............................ GATCGATATGTTTTTAAATACAGTTTGCGGAA 2212519 28 100.0 33 ............................ TTGATAGCCGTGAAAGCTACGATCACCTTTTTT 2212458 28 100.0 32 ............................ TTGTCACAAACGACATCTTTTGTCTCAACGGT 2212398 28 100.0 32 ............................ ACCCGCACTTGCTGTTTTATTCGCCCAGTTAA 2212338 28 100.0 32 ............................ ATCAACGGGAGCGTAAGCGAAATGAAGAAACG 2212278 28 100.0 32 ............................ TTTTTTACATCTGCCATTGCGCTTTCAAATTT 2212218 28 100.0 32 ............................ ACTTCCGCGAATTTCGTTAAAAAACGACCGCA 2212158 28 100.0 32 ............................ GCAACAAACGGTTATTACGAAGAAGAGATGGA 2212098 28 100.0 32 ............................ TTTGACAGCAGTCGAAGACGAAAGCGGCGATC 2212038 28 100.0 32 ............................ GAGCGTTATCGACCGTCGATGACAAAAGACAG 2211978 28 100.0 32 ............................ AATGATAGTTACTAACATTAAGCCGATTGCAC 2211918 28 100.0 32 ............................ TTGCCACACAATCGGTCGAGTGAGTTCATTTG 2211858 28 100.0 32 ............................ AGCTGATCAAAAGTTAAATTCTTGTCATCTTC 2211798 28 100.0 32 ............................ GAATGAGGCACCTGAATCTGGCAGTTCTAAAC 2211738 28 100.0 32 ............................ TCCCACCTATCCGCATCCTCAGGCCACTCACC 2211678 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 2211618 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 2211558 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 2211498 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 2211438 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 2211378 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 2211318 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 49 28 99.3 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //