Array 1 43089-44533 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHO010000003.1 Listeria welshimeri strain FSL W9-1327 NODE_3_length_511730_cov_64.412293, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 43089 29 100.0 35 ............................. CTGCTCACATAATGATAAAAGATGTACTCACCTTT 43153 29 100.0 36 ............................. ATAAACTCCGATTTTCCACACTCAAATGTGTTCACC 43218 29 100.0 36 ............................. GAGGCTTACGTCCGGACCGTTACAAGAACAACCGTC 43283 29 100.0 35 ............................. ACTGGAAAAGGTTCCGAAAAAGAACGAGAAGCACT 43347 29 96.6 34 ..........................G.. TGCCACACAAACGAACAACTAAAAAAGGAACGCA 43410 29 100.0 36 ............................. AAAAGAAGCTCTGTTACATCATCTTTTTGGTCAATT 43475 29 96.6 35 A............................ TTTCTTGTTACGAACAACTCTATCAAACGTTTTAG 43539 29 100.0 36 ............................. AAATATAAGCTTTCAGCTAACAAAGTGGAAATGCAA 43604 29 100.0 34 ............................. GCACATTTGTGTTGGGCTTTTTATATAGGGGTGG 43667 29 100.0 36 ............................. AGGAGGAAAACACGATATAGCACCTACGCTATCATC 43732 29 100.0 37 ............................. TCGTTTCCCCCGCCATTTGTCGCATAAATTTTACCTT 43798 29 100.0 35 ............................. TTTTAGCAACACTAGTTATTAAATCATTATGTTGT 43862 29 100.0 35 ............................. TGTGCCAAGCGCCAACGCTTAGATTTTTTAACTTC 43926 29 100.0 36 ............................. AAAGAAAAATTGCCACATCATTGACCTGATTGCCGA 43991 29 100.0 36 ............................. TTCGTTACATAACTATAGTATTGCCGATTTAGAAAA 44056 29 96.6 34 A............................ TAATATTTAATATAGTTATATTGTACGTTTTTTC 44119 29 100.0 34 ............................. TTGGATGAAGTATTTATTTTCTTCTGCTAACACA 44182 29 100.0 36 ............................. TAAATTGTATATAGTAAGCTAATTAAAAAAATGAGC 44247 29 100.0 36 ............................. ATCTTTGTCTAAATAGCTTACTTCATATTGAACGCC 44312 29 100.0 36 ............................. CGAGTTGTAATTTGGGAAAATGTTAAAGGCGTACTG 44377 29 100.0 35 ............................. GTGTCTGAATAGGCTGGGAAGGTGCAGACAGAAAC 44441 29 100.0 35 ............................. TAAGCAAATCTTTTGCTGTAATAGTGCCATCAGTG 44505 29 89.7 0 ................A......C....C | ========== ====== ====== ====== ============================= ===================================== ================== 23 29 99.1 35 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCGAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAGGGTGAAATAACACCTGCTCTTTTAGTGAAACTAAGAATGGAGTTAGATAAGTATATTCGAGATGACCAAGATTCAGTAATTGTATTTTCTAGTAGACAGCAAAAGTGGCTAGAAAAAGAATTTTGGGGGTTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCGATCTGTCGACCCTTAGTAGTGCGAAAAATAGTAGGGTTCGACAGATTGACGGAGATGACTGGGGGAGAATGATTTTAAAGGTTTTTAGTGAATATCCGAAGAAATAAGTTATAATTTTTATGCAATTTTTCAGAGGTCGACAAAAATAGTGCCCTGAGGTATTATGGGAGTAGGAGTAAAAAAGGGCGG # Right flank : CTCCTTCTCTCAACAATACACCCCCAAAAATAAAAAAATGGACCTCAACCTCAGTCCAAATCTTTTTCAATACTACCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTAACCAAAATTCCCTTAGAAGAAGTCAGCCCACCAAACAGCGCCGCCACAACCACACAACTTAAAAAGAAAATCTGCACAGTTTCAGCCATCTCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCTGCAAGAAATCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGGACTTTCTTATTCGCAAGTAGTTCCTTCTCCACACCAAACGTCCTCGATGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATAATATAAATATGTTCTATCATTACGATGAAAGTTAAAATAAATGCTAAAATGTCCATAAAAAACCCCTCTTTTCTACTTCGAAGTATAGCATGAATTGTAAATTTTTTATGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 6126-5430 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHO010000009.1 Listeria welshimeri strain FSL W9-1327 NODE_9_length_99270_cov_82.854345, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6125 36 100.0 30 .................................... TGGCTTATTTTTTTATGGACACAACGGACA 6059 36 100.0 30 .................................... TTACCTTCATTTGCAAATGAATCACTCTTC 5993 36 100.0 30 .................................... TACGAAAGGCGGGTTTGTAGTATATGCGGA 5927 36 100.0 30 .................................... GTTTTAATGATTTTAAGTATATTTGCTACG 5861 36 100.0 30 .................................... TCCAACCAAAGAGAGGTATGTTGTCTTCGT 5795 36 100.0 30 .................................... ACAAATGAATGTTTAGCAGCAACGGCAGAT 5729 36 100.0 30 .................................... TTAAATCAAATATAACTATGTAACCACCTG 5663 36 100.0 30 .................................... GTATGGGGTAGCTTCTGAGCAAACTATGCT 5597 36 100.0 30 .................................... TAGTTCTTTAGATTTACTACTTTATGGTTT 5531 36 100.0 27 .................................... GAATATTCTCCCCCATCGCTAACAGGG 5468 36 83.3 0 ............CA.....C.....A.A.......G | C,A,T [5433,5436,5441] ========== ====== ====== ====== ==================================== ============================== ================== 11 36 98.5 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTACTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTTCGCAAGTTACTTTAGATTCTGATTATTTTTTACACGTAGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGTGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACAAAACATGGTTAAATTTAAAAAGGAGTTAGGTATCTATATGACTCAGTATTACTATCTTACTTCGAAGTCGCTTTTAGAAAATGATGGGGAAAAGTTTCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATTTCAACTTGCTGTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATTGGCAAAAAAATTGTTACGAGACTTAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAGGATTTCCTGTTTTTGAATAAAATAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //