Array 1 62012-62267 **** Predicted by CRISPRDetect 2.4 *** >NC_011296.1 Thermodesulfovibrio yellowstonii DSM 11347, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================== ================== 62012 30 100.0 44 .............................. ATAAAGAACCCTTTGAGCCGAAATGGCTCAGAGATCTCTCGCAA 62086 30 100.0 45 .............................. AGAAAAAAAATTAGTAGTTCTATCTTAGAATCATTTAAGTCGCAA 62161 30 100.0 47 .............................. TGATCTGGATAGAGAATTGGAGATAAAGGGAATAAAGGAAGTCGCAA 62238 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================================== ================== 4 30 100.0 46 TCCCTTTTAAATGAGGTCTTGTTTTCCAAC # Left flank : GCAGATTATTTCTCCAGCGGATTCGTTATCAACGGGTGTCCTTATATCTGAAAGGGGCTTATTTTTAAAATTTTTAATTAAGTAAATTGATTTCTCAGAAAAATTTATAGATGGTAAGTTATACTCGTGTATAAGTTGTGAGAGAATGCCTTTATTGATAAGGGTTTCAGTTAATTTTCTTTTACCATCTAAGGTAGTAATTACATGAAGTTCTTCAATATTAATTTTTTTCTTAGCAAGTGCATAAATTGTTTCTGTTATTATCTGTGGAGTCATACCAATTACGCATAGAAGAATATGCTTTTTCATCTTGATTTTTCTATAATCCTAAGTATTTTTAAAAAAGGAGTTCAACATCAAAAAACATATAAAAATATAACACTTTTTAGGGAGAAATTAAAATATTCCTAATATCATTCCAAAAATTAAGTCCTGAAGTCTCAAATTTCTTGTTCTAACTTGGAAGGAGACTCTTTCTCATGATTCTGAAGGTATAAATG # Right flank : CGGTAGCCTTTGTAACTTACTGATTTTTATGGCTTTTTAGTGCCTTTTTCCGTAACCTCTCTCAGAGAGGGCTAAAATGTAAGTGAATACTTTCAAATTTTTACCACTTTTTAAAGTCTAAAACTTGTCAAAGATCGTTGATACTGTAGCGAAAGCTAATTTAGCCTCTAACCTCTCACGAGATTGTAATTTTATACCACAATATATCCCTCTTCGTCAAGAGTAGAGAATAAGTATCTTACATTTTGTTTCGGATTTTTATCTGGCTGAATGTAAAATGCTTTAAAAACTCTTGTAATGAAATTAATAATTTATTAAAATTAATGGAAATATTTCTTAAACATTTTTTATGATTCCTGTTTAATTATTAAATTAAGTAAGTAGTATTTAGAGAGGAATTTCATGATTACAGAACTTGAGGTTGTCGCAAAAGGAGGACTTCTTTACAATATTGGTAGGGTTGCTTTGAGAGCAGAAGGTAATTTTAATGAAGAAAATTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCCTTTTAAATGAGGTCTTGTTTTCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 632030-633918 **** Predicted by CRISPRDetect 2.4 *** >NC_011296.1 Thermodesulfovibrio yellowstonii DSM 11347, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 632030 36 100.0 39 .................................... TTCATTGCTTATTTTATCAATTTCATCTTCAACTTGTTT 632105 36 100.0 35 .................................... TTCTCTTTTAAATAGATATCGTGAGGGCAAATTTT 632176 36 100.0 34 .................................... CTAAAGTATCCTTTATCTCTTGTATAAGAGATTG 632246 36 100.0 37 .................................... ATAATTTGATAGTTCTAAATCTTGTCCTATTATCTCA 632319 36 100.0 35 .................................... CGCTAGTTGGTATAACTACATGATAAAAATCAGTT 632390 36 100.0 32 .................................... TTTTTCTTTTTTACAATATTCTCTACTTCTTT 632458 36 100.0 36 .................................... ATCAAAAACCACTATTTCCTTTGCTTCTTTTTGTTG 632530 36 100.0 36 .................................... TTTGACTATGTCATTTGTTTGACATGGGAAAGTTGA 632602 36 100.0 35 .................................... CAATTTCAATTAATTCTTTCATTTTCCCCTCCGAT 632673 36 100.0 36 .................................... TTCAAGTCCCATCTCCTTGTAAATTTTCTTCTTCTC 632745 36 100.0 36 .................................... TTTAAGGCGGCGATAAGTGTCTCTTGCTTTTGTCCT 632817 36 100.0 33 .................................... CCATTTTTACCTCCCTTTTTGGTTTTGTAAAAA 632886 36 100.0 35 .................................... TAATTGGTTTAATGATACCCCGATATGGGTCCAAT 632957 36 100.0 34 .................................... ATTTTGTTCCTCTTCCTTTGCCCACTCCCAATCT 633027 36 100.0 37 .................................... ATAACGTATCATATCAAATATTACAAGGATTTTCCCT 633100 36 100.0 35 .................................... TTAATCCATAAGTTATATTGTCTTCTTTAAAATAA 633171 36 100.0 36 .................................... ATCCATTTTTGAGTGCATTTTCAAAGACCTGAAGTC 633243 36 100.0 36 .................................... CAAGCACTATAGCAGCACCACCGCACACAAACCCAA 633315 36 100.0 35 .................................... TGCAGTAAACGCAATAGGCGGCAGAGTTATGTCAG 633386 36 100.0 34 .................................... GGCTTTTCCTTTGCAGCATCAATTGCTGCAACTT 633456 36 100.0 36 .................................... GATATGAAACCAGAGGATACTTATTCATTATGTTGT 633528 36 100.0 36 .................................... ATAAAACCTCCTATATGTTTCATTTCTTCTTTAACT 633600 36 100.0 33 .................................... CACACATAGTAACATAAGTTGTAACGGCAACAT 633669 36 100.0 35 .................................... TCAAAGAATCCCAGAAGGGTGCACCAACTATCTGT 633740 36 100.0 36 .................................... ATGAATCATTGTATTGTAGTCCTGATAGCAGATTCT 633812 36 100.0 35 .................................... TTAAAATACTCAGTTGTGGTTGTCCTGCTCTTTAT 633883 36 97.2 0 ...................................G | ========== ====== ====== ====== ==================================== ======================================= ================== 27 36 99.9 35 GTAGGAAACAAGACCTCATTTAAAAGGGATTGCGAC # Left flank : ATTCCATATGTAAAGGCTGGTGAAATCCTGCATGTTGGCAAAGGAACAAGTTTTGGATTGGGCAAGTACGAGATTGTTGAGTTCTCAACTTGACAAACATACAATGGTTATGATTTGATTTAATAAATTGCTCTTTGACAAGGCTGGTTTGTTTTAATCTCTAATGATTAAAACATACGAATATTCACTCCGAGCTTGGCGCTTGGAAGAATATTATTTTGCATTATTTTAATGGAGAGCTAACACTGTTTATGAATAGTTATTCCGAGCCTGCGTAAACAGGCGATGAATCTCAATCTCTATTTTTGAAGAAAAGAGATTATTTTCAACCAACTATTGGATATATTCACGCAAAATATTGCAAATATTTGTTTTGCTGGGAATATAAAATTAAGCATTATCAATGTTTTGAACCTCATGCGGAGGTGGGAAAATGCGAAAAAATTTGCACACCCATTTTTATAACATGTTGAAAAATAAACAAAAAAATATGATAGGCA # Right flank : GTTTCTAAAAAGGAGGTTTTAATGAACGTTGACAACAGCAATCAAGAGCCTTTATTAGGTTTTTTATCTCTTTATGAGACAACTTCGCATGATGGATATATTGGAAGCTTATTGATAACTGATCCTCATGGTATACCACAAGAATTTAGATGCACTCATCCTATTAAACCTACGGCAATCCAAAAGGATATTATACGGAGAGAGTTTAGAAACCTATGTTGGTGTCAATTTATGCGGATTTTCTTTGCTCAAATCTCTTCAAACTGTTCCATCAATTTTAATTGTTGGCAAGAATTACCTACTTGACACACGAAAAGTAACTTCTTATCCCGTTGTATATGTTAGAAAAGCTGGTGAAACAATAGATTTAAGTTCATCGGAAAGTTCAAAAATTGGTAAAAGGGAAAGAATTGAATGCCCTACCAGTAAATTTCAACCGATAATAGTTATCTCTCATCCAGATTTTAGTGATGATTTAGCAGTGGCAAAACAGATGCTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGAAACAAGACCTCATTTAAAAGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 3 1074817-1076909 **** Predicted by CRISPRDetect 2.4 *** >NC_011296.1 Thermodesulfovibrio yellowstonii DSM 11347, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 1074817 30 100.0 37 .............................. TTGTTTTGCCAAATTGATATTTCCAACCAGTTCCTCC 1074884 30 100.0 36 .............................. TTGTATTCAGACAATAATTCTGTTCCTTCAAGCTTT 1074950 30 100.0 37 .............................. AATAATCAAAATTATCAAGATTATCAGAGTTGTTATT 1075017 30 100.0 35 .............................. GTTTTTTGGTGCATTTTCAAGACTTTTTATTGTTA 1075082 30 100.0 36 .............................. GGTAAGTTATGTTCAGCCTTATGACCTTGTTAGAAC 1075148 30 100.0 35 .............................. TTGTATTCTTCTTTAAAAATCACATAGCCATTTAT 1075213 30 100.0 36 .............................. GTATCAGCTGTTGCATCTGCTGTTACAACAAACTGC 1075279 30 100.0 35 .............................. GTTTGATACAGCTGCAGGATAGCCATTGACCTCTC 1075344 30 100.0 36 .............................. TTAAAACTTCTCCATCTCTGGCTACGGTTCTAAGAA 1075410 30 100.0 39 .............................. AACTATTTGTGGAGCAAGATATGCAGACAGCACTGCTAC 1075479 30 100.0 35 .............................. TTCAACTTCAACCCCGTATCTTGGAGTTGTTTCAG 1075544 30 100.0 36 .............................. CGCATTTACTTATAACAATTATCATTTCATTTCCTT 1075610 30 100.0 36 .............................. CATTTAAGCCCCACCAATAAGCATAGAATAAATAAA 1075676 30 100.0 35 .............................. AAGCTCTCAGAGATAACATATGATGCAGTCGTCGG 1075741 30 100.0 37 .............................. CGAGGCTCAAACAGGTGGAATACTTCAAACACAAGGG 1075808 30 100.0 35 .............................. ACTGTATTCTGTTTTTGTATCATTGAAGTGTGAAA 1075873 30 100.0 37 .............................. ATTTCTCTCTTAAAATACCTTTTAAAAATTTTTTTTG 1075940 30 100.0 37 .............................. CTTTACACTCCATTGCAACTTCATAAACCATATTATT 1076007 30 100.0 37 .............................. ACATTTTGCCTGAACAGATATGTTTGCTCTAAGATGA 1076074 30 100.0 36 .............................. TATCTATACCTTAACTCTCTCATACCTACCCTCTTT 1076140 30 100.0 39 .............................. CCATGACGGCTTCAACACATCTTCAATTCTCGTTAAACC 1076209 30 100.0 38 .............................. TTCAATTTCTAATTTTTTATTGTGTTCCATTTTTCTCC 1076277 30 100.0 41 .............................. CTTGAAAAAACTTTTTTAAATCAATAACTTCATTATCCCGC 1076348 30 100.0 35 .............................. TATTCTATAACTTTACCACCCTCATCCACACACAC 1076413 30 100.0 36 .............................. ACTTTAATACTTCAAATTTCCTTTTACCTTTAGACA 1076479 30 100.0 37 .............................. GTATTATTTGACATACCGCAAGCAAGCAAGAGATAGA 1076546 30 100.0 35 .............................. TTTTATAACGCTCCCACACCATCTCCGCACTCGTC 1076611 30 100.0 38 .............................. AACAAAATCGAACGAGGTTTAACGCTTTCATCAAACTC 1076679 30 100.0 35 .............................. CCATACAAACCACCTTGCCCCAAAACATCGCATGG 1076744 30 100.0 39 .............................. CTTTGTCAAGAACAAGCTCTTTCCATACTTTTGCACATT 1076813 30 100.0 37 .............................. ACAACAAACTCATACATTTGAAGTGCTCCCTGAGCCC 1076880 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 32 30 100.0 37 GTTTTGAGCCTACCTATGAGGAATTGAAAC # Left flank : ATGCAAACAATAAATTAAATATCACCTCAAGCTATACCTAGGGGCATATGTCTTAGCAATCGGACAATAAATGAGAGTTATACTCGTATACGATATTAATGAGAAAAGAGTAGCCAAAGTACTTAAAACATGCAGGAAATATCTCCACTGGGTACAAAATTCTGTATTTGAAGGAGAAATTTCTGAGGCAAAACTCGAAAAATTGAAGATAGAGCTGAAAAAAATAATTAATCCAGAAGAAGACTCTATAATCATATACACATTTCGCAGTGAATGGTATACCAGAAGAGAAATAATAGGAATTGAGAGAGGAGGAGAAGAGATAATAATTTAATTTTTTACATTTCTCTTTATTCTCGTCAACCTTCAATGGTGCAAAAAACTCCAGCCTTAGACGACTGAAATTATATTGAAAAATTAAAGATTTTTTGTTAAAATTCAAAAAATAACCAATGATCTTTGACAAGCGGATCAGATTGATTTTTTCACATTTTAAACGG # Right flank : CAGAGAAGTTCATGCCTGAAAATTTTTCACTCCACACCCCATACAAAAAATGTATGATAAAATAATTAATGAACTTCCTTTCAAATCAGCCGTCTAATATTAATACTGCTTTATTAGAAGAAGTAAAAAAAATCACCTCCCTCATCAAAACTAACAATGAAATTTATAACCTTTCTATAACCTCCTTTTCATTATTTATTTGTTTTTATAAAAACAACTTTATAGTATTTGAAGAAAATGAAGACCAAGCAGCTAAACTTTACGCGGCTTTTAAAACTTTTTCATCTTTTTTCAATACTACTGATGAAATAGTTTTCTTACCATCTAAGGGCACAGAAAGAATGATTGCAATATTTAAAATTCTGAATGAGAGAAATAAAAAAATAATAACAACAGTTGATTCTGCTAAAATTCCTCCCCATATTGAAACCATTAATATAAAAAAGGGAGGGACTATTGAAAGAGAATTTCTGGCAAAAAATCTTATTAACTTAGGATAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 4 1787448-1787632 **** Predicted by CRISPRDetect 2.4 *** >NC_011296.1 Thermodesulfovibrio yellowstonii DSM 11347, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1787448 37 100.0 37 ..................................... AAACTTAAATTTTTCATGTCTTTCTCCTTTGAAGTTA 1787522 37 100.0 37 ..................................... TTATAAGCAGCTGCCTGAGCTTTGGTCAGACCGAATC 1787596 37 91.9 0 ................................T.T.A | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 97.3 38 GTTGGAAAACAAGACCTCATTTAAAAGGGATTGCGAC # Left flank : AAAAAAGGCATTCTCCATAACCACCTAAATCTTCTTCTAAATCCACCTAAGCATCTAAAGCCTCTGCCAAATCCGAACCTTCTACCTGATGCAGAATTCATATATCTTGATGCGCCACCACAATAGCCCATTCCTCTACCTGTCATTGGACCCTGCCCAAAAGGTCCTGTTCTGTCAAATCCTGGCATTTTATCACCCCCTAAATTTATTCTGAATTTATATTAATGAAAATCATTATCAATTGTCAATTAAATTTTTTCATTATTGTTATAAAATATCTCTTGACGAAGAGAGATATATTGTGGTATAAAATTACAATTTCGTGAGAGGTTAGAGGTTAAATTAGCTTTCGCTACAGTATCAACGATCTTTGACAAGTTTTAGACTTTAAAAAGTGGTAAAAATTTGAAAGTATTCACTTACATTTTAGCCCTCTCTGAGAGAGGTTACGGAAAAAGGCACTAAAAAGCCATAAAAATCAGTAAGTTACAAAGGCTACC # Right flank : AAAAAGCAACACCAAGCCCAAGTATTTCTGAAACAAAGGAGAGCATCACAAGTCCTACAATAATATTCTCTTGTATAGAAAAAATTTTATAAACTTGACATATAACCTACCAATAATCTTGGGCTTTCTTGCTATCAAATATTCAAATTTTTATAGATTGCCAAAAATTTCTTGTTACGTTATAATGAAAAAATAATTGTTTAGGAGTTTATTATGCCTTTTGGACAAGGATGGGGATGCAGAGGAAGATTTAAAGAATGTGGATTAAAATGGACACAAACAAGACAAGCTGTTATTGATATACTTTCATCAAAAGGCGGACATCTTAGCGCAGAAGAAATCTTTCTTGAAGTAAAAAAGCTTCTTCCAGGAATAGGACTTGCTACGGTTTATAGAACACTTGAACTTTTAACAGAGCTCGGAATAGTAAGGAAATTTGACTTTAAAGATGGAAGGTCTCGCTACGAATTCGTTGCCGGCAAAGAAGGTATTGAACATTA # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGAAAACAAGACCTCATTTAAAAGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 5 1937223-1929305 **** Predicted by CRISPRDetect 2.4 *** >NC_011296.1 Thermodesulfovibrio yellowstonii DSM 11347, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 1937222 29 100.0 35 ............................. CCAATAGCCTCAACAATGTTTGCAGGTCCAGCATC 1937158 29 100.0 36 ............................. GTGTGGGGGCATCTTTGTTCCTACTGAGGATTTCAT 1937093 29 100.0 37 ............................. GACTAAATTGCCAACCAGAAGCGTGATAATCCACCAG 1937027 29 100.0 36 ............................. GATGGTTCAGTGACTGTGAAGTCAAGCATCCAGCTT 1936962 29 100.0 37 ............................. ACAATCAAAGATGGTGAATATCTGATATGTGTGCCAA 1936896 29 100.0 40 ............................. TACCTACCAGTTGCCCAATTTGTGCGAAAAAGGGAGCAAA 1936827 29 100.0 37 ............................. GAGGTCTTGTGGTAATAGTGATTTTTCTATCAAGGTC 1936761 29 100.0 37 ............................. AATACTCTCCCCGTCAAACTTCCAACAAAGCCTGTCT 1936695 29 100.0 36 ............................. TGAAAAAATAAAGGTTTTTGGCAGTTTGGAAATTTT 1936630 29 100.0 36 ............................. TAAGTCTGCATCTGGAATATGTGCCCAGTTGAAGTT 1936565 29 100.0 38 ............................. TTCAGAAAAAACTGCCAAAGATGTCAGAATAGCTTTTA 1936498 29 100.0 36 ............................. AGATTCCATCCTGGAGGGCTTGCATGGGATGAAGTT 1936433 29 100.0 35 ............................. AGACCAAAGCAGACGGTAAGCGAGTGGGCGGACGA 1936369 29 100.0 36 ............................. GCAGAGCCCGCAGCTCCACCAGAGCCACCTGCACCA 1936304 29 100.0 35 ............................. TGTTTCAAGGGGAAGGTTCACGATGTAAAAACAAG 1936240 29 100.0 36 ............................. AAAGCAGTAATTTTAAGAAGATTGATTTTTGCAGGA 1936175 29 100.0 37 ............................. GTTTATGTTATAGAGAATTTGCCAGGGCAGGATGGGA 1936109 29 100.0 37 ............................. TATTTAGACTTGCCTACGATGCAGTAGAGCAGTATAA 1936043 29 100.0 37 ............................. GTATGGGTTCAAATGTCAGCACTTTCAGGGAAAGTTA 1935977 29 100.0 36 ............................. CTTGAAATATCTCTTGTAAGCATTCCTGCAGATGCA 1935912 29 100.0 35 ............................. ATAACAACGAAAATAGTAACTTATCAAAAAACAAA 1935848 29 100.0 36 ............................. GAAGGGGTTAATGTCAAAGACAAAAACATAGAAGAG 1935783 29 100.0 37 ............................. TTGTAGTTTGTTATTTCCGCTGTTGTGTCAGTACAGT 1935717 29 100.0 41 ............................. GTTATTATTGTCCTTGCTGGTTGAGTAATAAATTTGATATT 1935647 29 100.0 36 ............................. TCTGTTAAAAACATTAAACTTGACGAACTGCTGATA 1935582 29 100.0 36 ............................. AAGAAAATGCCGAAACAATTTCTTCTGGCATACACA 1935517 29 100.0 36 ............................. GTATCGCTTTATCATTGTCTCATTCCATTCGTTTAA 1935452 29 100.0 37 ............................. TAGGAAGGACCCCTCTCCCCGCCTCAACTAACTCAGG 1935386 29 100.0 37 ............................. ACGCTTAGAGAAAGAAGTAGAGATTTTGAACGCAACA 1935320 29 100.0 37 ............................. TCTTGTTCGGTTATAAACTAAATATCTCAAGCATTCA 1935254 29 100.0 35 ............................. AGATTAGCTCTGGTTGGGATAAAAGCTCTTGCAAC 1935190 29 100.0 35 ............................. TGTAAGATATTGATTGCAATAAAGCCGATACATAC 1935126 29 100.0 36 ............................. TCTTTGTTATAGATGATTTTGTCTTTAGGAATTTCA 1935061 29 100.0 38 ............................. TATTGTTGAATTGGAGACATATGTGGCGATGGGTCTAC 1934994 29 100.0 37 ............................. TCACTCACTAAGTTAGATTTGTCTAACAAAGTTCACT 1934928 29 100.0 37 ............................. AGAGCTAAAGACAATGCGTATCTTTTTGCATATGTGA 1934862 29 100.0 36 ............................. AAAGAAGTTCAGAGACATAACAATATGCTTTATAAC 1934797 29 100.0 35 ............................. ATATTGGTAAAGCCACACTTTTTGGCAAAGACTAT 1934733 29 100.0 36 ............................. TGTTTTAACGCAACAGCAACTTGGATCTTTTATTGT 1934668 29 100.0 38 ............................. ATAGATACAAGGTATTTTAAGGATTTAGAACTTGAAAT 1934601 29 100.0 37 ............................. ATCTCAACTTCATCAACAGTAACATTCTGTCCCGTTG 1934535 29 100.0 36 ............................. TTTTTTAACATATTTTCTGTAACATCCTTTTGCATC 1934470 29 100.0 38 ............................. AGAGCTAAAGACAATGCGTATCTTTTTGCATATGTGAT 1934403 29 100.0 37 ............................. TCAAACTTCCAACAAAGCCTGTCTCCACTACCAACGG 1934337 29 100.0 41 ............................. GAATTTATTTGTGATAATTTTTATACTAAGTTAAGAAACTT 1934267 29 100.0 37 ............................. ACAGTTCCAGAAGTGCTTCAGAAGGTTATGATGATTT 1934201 29 100.0 36 ............................. TTTTGTAAGACCTTCTATTGTCAAAACGTGGTTTTC 1934136 29 100.0 37 ............................. TCTTAATGCTATTCCTAATGCTCTTGTATCTGGTCTC 1934070 29 100.0 36 ............................. TTGTCAATAAAATCAAACACAAAGAGTTTGTTGAAC 1934005 29 100.0 35 ............................. TGCTTTCTAAATGTTTTATCAGGTCCAGCATCATA 1933941 29 100.0 38 ............................. GCATCATACATCTTGCATTTTCAAGTTTGTCAATATTA 1933874 29 100.0 37 ............................. GAAGACTTTGAAGTTGAAATCTAAACAAAAAAATGGC 1933808 29 100.0 36 ............................. CGGAGCTCTTTATACTGCCCAACACAGTATGGACTC 1933743 29 100.0 38 ............................. ATCAAAGATTTAGCTTTCTGGCATTTTTTCATGAATTC 1933676 29 100.0 36 ............................. CAAACATAAAAAACAGAATTTGCAAAGTATAAAATT 1933611 29 100.0 43 ............................. AGATGGTGAGCCAGAAAGGGCTTTTCTTTTTGAGTATGAGAAT 1933539 29 100.0 38 ............................. TTTAAAAATTATATAAACAGCATATATAGATGCAAAAA 1933472 29 100.0 37 ............................. ACTTATTCTATCAAATAATACAAATGTCCTCACCCTC 1933406 29 100.0 37 ............................. TGTGGAGCTAAAAAGTTTCTGTTATGGTCAACAAGCA 1933340 29 100.0 37 ............................. AAAGAATATTGCGGCATCTTGAATAATTACGGGTTCA 1933274 29 100.0 36 ............................. TGCAGTATGGTTCCGGTTCTTTCAGTTCTTCAAGCA 1933209 29 100.0 37 ............................. ACAACAGAACAAATTCGTGATTGGGTTGAGAGTAATA 1933143 29 100.0 37 ............................. TGAGATAAGGTATTGCTTTAACTTTTCTGGCAAATAT 1933077 29 100.0 36 ............................. CTTGATTGTTTTTCAAGAACCCAAAAATAAGTATAA 1933012 29 100.0 37 ............................. ATTGGTGCATCTACTATTGCCACAGCCCTTATGGCAT 1932946 29 100.0 35 ............................. CAAGAACCCGCATCTGTGCGGAAAAAGGGATAGAT 1932882 29 100.0 35 ............................. CAATGCAGATAGTGCTTAAGAACATGCAATCAACG 1932818 29 100.0 35 ............................. AGCAACTACTTTCAAAATTACATATAAATTTCCAT 1932754 29 100.0 35 ............................. TTGCCTGTATCTGCGATTGACAAGGGAGATGTTAA 1932690 29 100.0 38 ............................. AATATAATGATGAATTATAGAATTCATTCTAAAAAAGA 1932623 29 100.0 40 ............................. ACAATAGCAGTGGTTTCACCATCTTTAACAGTTACAGTTG 1932554 29 100.0 37 ............................. AAGTGCAAATTGAAAAGCACGAAGGCAAGGCAACAAC 1932488 29 100.0 36 ............................. GTTTTAAGTAAACTACGTTACGTAGTTTACTTTACA 1932423 29 100.0 37 ............................. TCTTCTGAGCAGGTTTTTCTTCAACCTTCTTAGCTTC 1932357 29 100.0 38 ............................. TCTTCTCTGAAAACTCTTTCTCGCTCATCAGCACATCT 1932290 29 100.0 37 ............................. TAGAAGATACTCAAGCCAATGAGAAAACTGACATGTT 1932224 29 100.0 37 ............................. TTCGGTTGTGTTTTTTAGTGTTCTGTAAAACAAGTAT 1932158 29 100.0 36 ............................. GTTGGAGAAATTGCTTACATAACAATAGAAGCAGTA 1932093 29 100.0 38 ............................. CAGAGATTACTTTTTTGTCTTTTACAGCAGTGGTTGCC 1932026 29 100.0 36 ............................. GTTGGAGAAATTGCTTACATAACAATAGAAGCAGTA 1931961 29 100.0 38 ............................. CAGAGATTACTTTTTTGTCTTTTACAGCAGTGGTTGCC 1931894 29 100.0 37 ............................. TAAAGAAATCATCATTAGAAATTTCAACTTCAAATTC 1931828 29 100.0 36 ............................. GTTCAAGCTCTTGTTCACTTCTTGCAAATACATGCT 1931763 29 100.0 35 ............................. TCGAGTCCTGATAATTATATAAATCCATCAACTCC 1931699 29 100.0 36 ............................. CCAAAGGCGGTGGTACTGAATTTCTCTATATAATGC 1931634 29 100.0 36 ............................. TTAATTTAATTCTCTCTATAGGAACTTCAAAGAGAA 1931569 29 100.0 36 ............................. GCAGGATTAATTATAGGAGTTTTTACTCTTAACATC 1931504 29 100.0 36 ............................. TTTGCTTTTAATGAAATATTAGCATTATTTATTAAA 1931439 29 100.0 40 ............................. CTTGCATAGACAAGCCAAGCCTCTGACAGGCAGCCTCAAG 1931370 29 100.0 39 ............................. GCAGGTATTTTCAATTGCTCCCTTAAACACATTCCCCTC 1931302 29 100.0 37 ............................. CAGGTCAAGCTGTCCTATGTCTAATTTTTTCTTCATC 1931236 29 100.0 38 ............................. AAAGTATGTATAGAGCTTCTTTTTCTGATTTCTTTCTA 1931169 29 100.0 37 ............................. ACAGTTTTAATAATTACCCTTGATTCACTTATGTAAA 1931103 29 100.0 36 ............................. GCCTGATGCAGAGAATCTTTTTATTACTCCTTCAAT 1931038 29 100.0 36 ............................. TATACCCTGCAGTAATGTTCTGATAAATTATAAAAA 1930973 29 100.0 36 ............................. TATAAGCCCTATAATTTTCTGTCTGTTTTTAGAACC 1930908 29 100.0 38 ............................. ACCGGGAGTATGCTGCAGTATCTTTACTATTTCTTCCT 1930841 29 100.0 37 ............................. ACGTTTTCGGTTCGGCGGGGTACTCTTTGTTAATTGT 1930775 29 100.0 36 ............................. TTTTTCTTAACAACCCCGCCAGAGGATTTAGTCCCT 1930710 29 100.0 35 ............................. GATTGAATCTGTCATATCTGTAATCCACAATCCCC 1930646 29 100.0 37 ............................. AATGTTCGCCGCAGGTCATGCCAACGGACATCCTCAA 1930580 29 100.0 37 ............................. TCCAATTACCCTTGCAAGTTCAGCAACATTAATGCGT 1930514 29 100.0 36 ............................. TTTTTTCCTGAAGAGAAACTGCCTTATTTATATTGT 1930449 29 100.0 36 ............................. CTTAGCAAGAAAACAGAGCAAACAAGAGCTAAAAAA 1930384 29 100.0 36 ............................. TCAGAGGAGGGACTACCATAGCAGGAGGGATTGCGA 1930319 29 100.0 38 ............................. CAATAATCCTTAGCATCTACCACCTCACGAAAGGTATG 1930252 29 100.0 37 ............................. ACTGTATAGTTCACAAGTATGTTTATTGCACGGTTAA 1930186 29 100.0 38 ............................. TTTACTGGAGGTAGGAATAAACTTATAAAATATATTTT 1930119 29 100.0 36 ............................. CAAGACCTCGCAATGGAATATCTTTGGGGTAGAATA 1930054 29 100.0 38 ............................. ACGATTTAGAATTAGAAAGGAAAGCTAAGCAAGAAGCA 1929987 29 100.0 37 ............................. CTTCCCCACGCAAGCTCAATGAAGTTATATCCGCTCA 1929921 29 100.0 36 ............................. AGTTATATTTAGTTGCTAATTCCAAAAGTATTTTTC 1929856 29 100.0 37 ............................. TGCACTTGCCATTACCTACGCCAGCGAAAAATATCCA 1929790 29 100.0 36 ............................. TCTAAAAATAATTCTCTTTCTGCTTTTCTTCTCAAT 1929725 29 100.0 36 ............................. GCAATGACACCAAAAATTTTCTTTGATGAATCTGAA 1929660 29 100.0 35 ............................. TCTGGAGAAATCTGCAATTGATTACTCTGTATTCT 1929596 29 100.0 37 ............................. GTGACAGATGAAGTAAGTGAAGTCAGCACCGTTCTTA 1929530 29 96.6 36 ............................A GTTATCAGATGGAAGAGGTTCAAACAGAAGATGGAA 1929465 29 100.0 37 ............................. TGATAAAGGCAGATTGTGAAAAGATGAGGATACACTT 1929399 29 100.0 37 ............................. CAGTGGGTTAGACAGATTTTTGAAAAGATTAAATCCT 1929333 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =========================================== ================== 121 29 100.0 37 GTTTCATCTGAACCATGTGGGATATAAAG # Left flank : TTTTATAGATAAATTGTGAGTAAACATTTTGAACTAAGCGGAAATCTCTATTTATTTTTATTAATTCTCACATTTAGAATGAGCACATTGCTTATGCCGAACCATTTTTTTATTTATGAGTGGAATTTACATATGGTATTCCGAATTGGAATTACCTATATTATTCCGATTTTCTCTTTGTCATTCTTATTATTTGTCTGTCATCTTTTTGTCATTCCGTTATCTTTTGTCATTCCGTCATTTTTTCTGTCATTCCGAACGAAGTGAGGAATCTCTTTCTATTATTAAGTCTGCATCAAACCTGTTTTAAGTCGGAGGTTAGGCGAGAGATAATATTATCAATAATTTGAAAAGTGATTTTGGACATTTTTTAAAAATTGATTAAAGGTCTGATGCAAATAACTTGTTTTTTGAGGGGGTTCTCAGATGCGATAATTTTTTTGTAAAATTTAGAAATATAAAGAATTTTGGGAGCAATTCATTGTTCATTGACAAGCTGG # Right flank : GGGGTGAGCAATTTTACAGTATTTGTAAACTCATTATAATTTCTTATCTGAGACATGTTAGGGACTTCTTTGACTGCGATTTAGACGAAGAATCTCCTCCTCTGTTAGGGGACTCTTGCAAGTCAGTTTCATCAAGGAAAGCCCTCGGGGTGACCCTTGCAATTAAGATTCCTTGATATTATAAGCCTCCTTCGGAACAACAACTATCAATTGCGAACCATTTTGTTTTATTTAAAAATTTTCTTGAAAGTGTCTTTAAGTTCATTTACTGCCTTTTCAAAGACGTTTCCCTCTGTGTTTTCAGAACCCTGACCCTGAGTTTTCTGCTCATCTATTTTTTTCAAATTTTCGTTGTTAAAATTCGCCTCTATGGGTTTATTTTTCGGCTGTTTTTCTTCCATTTTCTGTAATGCTTCTTCTGCTTCTTTGAAATCTATCAGAGCAGGTGCAATTAATTCACGATTGTACTCAAGTTTTTTAGCATCATGGTCTGGATTTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATCTGAACCATGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //