Array 1 1035-9 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVWP01000001.1 Streptococcus pseudopneumoniae strain 126_SPSE 1_17874_246049, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1034 36 100.0 30 .................................... CACCTGTATTAGTGAGTTCCTTCAGCGCCG 968 36 100.0 30 .................................... CTGCGGTAAAGGTTAAACTATACTTAACCC 902 36 100.0 30 .................................... CTTCTTCTCCTGTAATGTACTCAGGTTCAG 836 36 100.0 30 .................................... GATGGTTATTTTTGATAGAAAACAAGAGTT 770 36 100.0 30 .................................... TCCTCTTTTATTATCGTAAACAAGTGTATG 704 36 100.0 30 .................................... AACTTCATGCTATTAGCTGCGGACGCTGAA 638 36 100.0 30 .................................... ATCGCCGAAGGAAAATATAAAGGGTTCCGT 572 36 100.0 30 .................................... TCAATTCATCATACTTATTGCGCATTGCAG 506 36 100.0 30 .................................... CTTTCAACCATCTGCCTATTGGACGTACAG 440 36 100.0 30 .................................... TTCTAATTGATAAGCCATTTATTTTCCTCC 374 36 100.0 30 .................................... GAATGGGACATCAACCAACGAACGTGAACT 308 36 100.0 30 .................................... TGACAGAACAGGACAAACAAATCAGCAGTC 242 36 100.0 30 .................................... TTTAGCCATGCAAAATGGCGAGAGGGCTAC 176 36 100.0 30 .................................... CCGATGACATCCCAAACTCCGCAAGTGGAA 110 36 100.0 30 .................................... ATTGAAAGCTAGACAAAGAAAAGTCTCCAA 44 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATCAGCTTAATGACAAGCCAGAAGTCAAATCCATGATTGAAAAACTGGTAGCTACGATTACAGAATTGTTAGCATTTGAGTGCTTAGAAAATGAACTAGACCTAGAGTACGATGAAATCACCATTCTAGAGTTGATCGATGCCCTAGGAGTCAAAGTTGAAACTCTGAGTGATACACCTTTCGAAAAGATGCTAGAAATTGTCCAATTTTTTAAATATCTTTCCAAAAAGAAACTCCTTGTCTTCATCAATGCGACCGCCTATCTATCAAAGGATGAGTTAGTAAATCTGATAGAGTATATCCAACTCAATCAACTAAAGGTTTTATTTATCGAACCTCGAAAAGTCTATGATTTTCCTCAATATGTGCTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGGGTAACAATTGGAACCTGACGAGCTGAAGTCTGGCTGGGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTACGAG # Right flank : CTGTCCACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 18443-18607 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVWP01000137.1 Streptococcus pseudopneumoniae strain 126_SPSE 1264_19751_238347_1058_,...,891_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================== ================== 18443 35 100.0 30 ................................... CCGCCTCCAGAAGATTGTCCACGTTTTGCT 18508 35 100.0 30 ................................... TTATTTGCTGCTGGGTATTCCTTGGATTCT 18573 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================== ================== 3 35 100.0 30 GTTTTATCGGTCATAATTTTGGAGACTACAAAAAC # Left flank : GAACTGTCGTAAAGACAAATAACTTCTTCTTGGTTACAGGCATGCCAACCTGTCACTCGGATGAAGCCAAATAAAAAGGAGAAACATCATGGCAATCTCAAAAGAGAAAAAAAATGAAATCATCGCACAATATGCACGTCACGAAGGTGATACAGGTTCAGTAGAGGTTCAAGTTGCTGTCCTTACTTGGGAGATCAACCACCTCAACGAACACATCAAACAACACAAAAAAGACCACGCTACTTACCGTGGATTGATGAAGAAAATCGGTCGCCGTCGTAACTTGCTTGCATACTTGCGTAAAAACGACGTTAACCGTTACCGTGAGTTGATCAACTCTCTCGGACTTCGTCGTTAATCTTGCGTCTAAAACGTTTCTATACTTCGTTGCCTTCGCCTCGATGTACCATCAGTACAATCTTCGGCTTGTCGCCTAGTCTATAAACGTTTTATCCAGCAAGACTTGAGCTCTCTGATATTCAGAGAGCTTTTTTATTGCG # Right flank : CCTCAAATGGTATCAGCTAATGACACCATGAAGGTGCGCAGTTACTCGGCTTTTCAAGCCGAGTAACTGTCTGCAAGCCCCCTCGGAGAGCCCACACTTTACGAAGTAAAGTATAGTATGTTATACTTTACATGGAAGTAGTCACCGAATTCCAGTTAGAAATTACTTTGTAACTACGTTTTGAGGAGGAGTAAAATGCTTTCCTACGTTCGACATTACCCACTAGCGATAGCTAAATTAATGTGTCTGTGCTCTCCTAAAATCTGCTGATTTATTACTAACTAATACAGGAGGTTTTTATGGGACAGACAATCATATCTGCTATTGGTGTTTATATTTCCACCAGTATCGATTATTTAATTATTTTAATTATTTTATTTGCACAGCTATCACAGAATAAACAGAAATGGCATATTTATGCGGGGCAATATCTAGGAACAGGCTTACTTGTAGGGGCGAGTTTAGTTGCTGCTTATGTCGTTAATTTCGTTCCTGAAGAA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCGGTCATAATTTTGGAGACTACAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //