Array 1 10256-10633 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBOU010000001.1 Acidithiobacillus sp. GG1-14 Contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10256 29 93.1 32 .TC.......................... TCAACCCTGCCCGCACGTTTCACATATCTCCC 10317 29 100.0 32 ............................. GAGCAAACGCGCGCGGCAATAAAAATTATCGC 10378 29 100.0 31 ............................. TATCAGCTAACGAAAGGAGATTGACCATGGA 10438 29 86.2 31 A..CTG....................... GTCAAAATGGCCTAGAAAATCGCGGGGTTGT 10498 29 89.7 31 T.............T.............T GTGCAGACCAATAGCACATGGCTGGCGGCGC C [10501] 10559 29 79.3 16 TA.........A..T.........G...G GCATGGCAAAAGTGGT C [10562] Deletion [10604] 10605 29 75.9 0 TT............T........C..GTT | ========== ====== ====== ====== ============================= ================================ ================== 7 29 89.2 29 GGTTGCCCCGCGCACGCGGGGATGAAAGC # Left flank : CGCGCCTTGCGAAGGATTGATTCGGAATCGCTCAGCATTCTTGAGTTATCTGGAATATCATTTTGCATTCGTGATAGCACACTGCAAGAGATGAAAAAAATTTACGATAAAGAAATGGATGAGGAAACAAGGAATAAGATAAGAATGATTGCTGGAAATTCTTACACTCATCCAGAAAGTCGGAAACCTTGAGCAATGCGCTGCCCTTTTGCGTCTGAACTTTTGGCAATCAGGGGCACAAGGTCGGGGATAACAACAATGAAGTGCAGGAATACCTTTTTGTCGGGTATTGAGATGTTTTCTGGGAAAGGACGCCCTAACGCACTTGCACGGTAATTGCGGGTCCGGTGAGGTGGTCGCTTCCTCGCAACAAGGTCTGACCCGGTTCCGATCTATACCGCCAAGTAACGATCGATTTTCTGGGCGGATTTTGGCTGCGTAGCACGGTTCTTTTCTGGAAATACAGATTGTTCTTTGGAAACAGAATGTTGCGACAAAGA # Right flank : TTGGCACGGATGGTAACCCGTCTCTGATCTATACCGTTTTGCAAGGCGACATATCGCAAGGAGACCAGGATGTCCGATCTGAAGCCGTCGTACCGTTACATCGAGCAAATCCGTTCTGGCCAGCCACAGAAGGATATTTTTCTGGGATTCGCTTCTCACGCAGGGGATGCCCTGGATTGGGTATCCGAACAGAAAGAACGAAAGCAGTCTTTCTTTCGTCTCATCGAAGGCGAGTTTGGGTTTGGGAAAACCACGTTTGCACGCATTCTCTGTGATCGTGACATTTCTCCGGTCAAAGGATTCATTACCAGTCTGGGTATTCGTTCCACGTTCAAGGAGAAATTCGTGATTTCCGACTGGCTGTTCCGTGCGGAACCAACACCGCTTTTTCAGGAAATGGTACTTTCGGTAAAACAGGGCGGGATTCCTTCCCTCGCCTCGCTGGATCCGTCCTGGTATCCGCTGGTTTTGGCAGTTTTGGGCGTAGTCAATGGCCGGTA # Questionable array : NO Score: 5.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:0, 6:0.25, 7:-0.23, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTGCCCCGCGCACGCGGGGATGAAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 13257-13623 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBOU010000001.1 Acidithiobacillus sp. GG1-14 Contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 13257 28 100.0 33 ............................ TCCGCCCCTGACGTCCACTCTCTCCAACCGCAA 13318 28 96.4 33 ..............T............. ATGCAGTCGGCATGGCGTAGATCTCCTGAACCC 13379 28 100.0 28 ............................ GTCTACTGTGCTGTCGAACACAGACAAT 13435 28 85.7 17 ....A......A..T.........G... TGCATGACAAAAGTGGT Deletion [13480] 13480 28 82.1 27 TTC........AT............... TGGCTGACTGGAATCTGATCTTCTGGC 13535 28 85.7 33 A..........CT.G............. GTAGAGAGTCCGGCGGGCCGTGCCGACCAGATC 13596 28 89.3 0 ..C........A..T............. | ========== ====== ====== ====== ============================ ================================= ================== 7 28 91.3 29 GGTTGCCCCGCGCACGCGGGGATGAAAG # Left flank : GAAATCAGAAAGATGCCACGTACCGGGTTATTGATTCAGGAGTCTGGAGGGGGGTTATCCTTTTTCTTTTCCCAACCACGCATTGCCGATATGGATATTTCTTGGAATTCAGTGCGGTACTGCAAGGATTAACAGTCCGCCGAAAAAGTCCGTGGTATAATTTCTGGAACAGGTCACGGAGAGACTTGATCATGCGTGGAGACAAAGTAGAGACGGGTGCGATGTTCAGTTAGTAGTAGATCATCTGGCGTTGATAACGGTTTCTCTGACTATCGCAAGTGGCGGAATCTTCGTATTCCGTCCTGGAATGTGCAGGCGCGATTGACGGTCAAAGATGCGGACAAAGCCGCTCGAACCATGGTTCATGGAATTGGCCGGAATCGTGGTCTCGGTTTTGGTTGTCTGCGGGCAGTATCCGTTGCGGATTCTCTGGCCGCATAGCACGGTTCGTTGCTGCGAATTCCTGTTTGTTCTATGAAAACAGAATGTTGTGACAAAGA # Right flank : GTCGCCTGTGGATCGTCGAGGCGGAGTTTGCCATGGTAACCCGTCTCTGATCTATGCCGCACGGCAAGGTAATCAAGCGGTGGCGGTCTGGAATGGCGGTTCATCGGCTGACTTTTTCATCTTCTCCATGCTTCTGTTGTTGAAGAACTATCGGAGTTTTCTGGTCAGATTCTAGAACTATACGTTGGCAGGGCTGATGGCCCAGATCTGGGATAACGCATGGATGGACCCCCATTCTTTGGCGGGGGCCAGGGACAAATCAGGCGACAGAGGAACCGATATGGGCGACCGCCGCCCGCGCCTATTGGCAGAATCAATATGCGGTTCACCGCCACCACAAGACTCTTGTGTTAAGCAACGCCGCTGGCGAGCCATCCACAATCTGTTACATGTCGCTGCTGCCGCAATGTTCGCGCTGAATTAGATGCCAATTTGGGATTTCTGGTTTCAAAAATCAAAGCCATCAACGCTGCACTGTAGGGAATTCCGCACCGAATCAC # Questionable array : NO Score: 5.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:0, 6:0.25, 7:-0.23, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTGCCCCGCGCACGCGGGGATGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 3 22868-26676 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBOU010000001.1 Acidithiobacillus sp. GG1-14 Contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 22868 28 100.0 32 ............................ GTAGCCATAAGACGGGACGGGCACATTTACGT 22928 28 100.0 32 ............................ GCTACACCCGCAAGCAACAGAGCGGAAGTGAC 22988 28 100.0 32 ............................ AAAGCCAAGGCTGAATTGCTGGGCCGGGGTAC 23048 28 100.0 32 ............................ TCAATGAGGTATTGACGGCACTATTGGGAGGT 23108 28 100.0 32 ............................ TGTGATCTGCGCCTGCTGCACTGCGGCCTGAT 23168 28 100.0 32 ............................ GCGGCGGGCGCGTGGCTTACCGCCCGGCACCT 23228 28 100.0 32 ............................ AATAACCCCGGCAACATCATGGGGGCTAATGG 23288 28 100.0 32 ............................ ACCCGGAAAGCATGGAACAGGGGGTTCTTGAC 23348 28 100.0 32 ............................ GCGATGGGGCCGAGAGAGCGTCAGATCGGGGC 23408 28 100.0 32 ............................ ACTTGAAATCCGCAGAATTTTGCCACTTCAGG 23468 28 100.0 32 ............................ TTGACGAAGATCGTGCCGTATTTGTCCAGACA 23528 28 100.0 32 ............................ GCAGCAATTTCGCGGGGCAGATCTCTGTGTAG 23588 28 100.0 32 ............................ CATCACCGTGCGAAACTGCAAAGTCGGAGATC 23648 28 100.0 32 ............................ ACAGGCGATCTTTCTCACTAGAGTCGGACAGG 23708 28 100.0 32 ............................ TCGGTGAAGCGGCGGCTGCGGCTGCGGAAGGG 23768 28 100.0 32 ............................ TTCTGTGAGGGTCAAACATGGGTATTGTCGCT 23828 28 100.0 32 ............................ GCAATCGTTCGGCGGTCAGATTCCTTTTTACC 23888 28 100.0 32 ............................ TCGATGCCGTCGCTTCGGCGGAGGCTGTTTGT 23948 28 100.0 32 ............................ GCCAGCAAGCCTAACTGACCCGATCCTGATCT 24008 28 100.0 32 ............................ TTCCAGATGAATCATGAAGCTGAGAAGGATAG 24068 28 100.0 32 ............................ AACAGGAGCGCGGGCCGCGAGCAATGGCAATG 24128 28 100.0 32 ............................ TCCTGTCCCTGTCTACCGCGTATTCAGTGCAG 24188 28 100.0 32 ............................ CATCCGGTTTCCAGCGCCCATTGCGCCAGCAC 24248 28 100.0 32 ............................ ATCCAGCCTTACTGGCGGTTCCTGATGCCCGC 24308 28 100.0 32 ............................ TGCGTGTTGAATATCCGCTGCGTCGAGATTTG 24368 28 100.0 32 ............................ ATCTCGCGGCGTGGGAGGAGACGCACGCTGCA 24428 28 100.0 32 ............................ AGCTTCGGAATGGTGATGATCGCCTGGCAGTT 24488 28 100.0 32 ............................ ATCTGGCATTGTCGATCAGGCTCGATGCACCT 24548 28 100.0 32 ............................ TGCCTCGTTCGCCGCGATCTGGTTGGCTACAT 24608 28 100.0 32 ............................ TGAAAAATTGCTTCCTCAGCTCTTAGCAGATC 24668 28 100.0 32 ............................ TCACGCTCGCGTTCCGCGTCCTCGCGGGATTT 24728 28 100.0 32 ............................ TCTCGCGCCTTTCATCGAGCACACGGCTGTGG 24788 28 100.0 33 ............................ GCCATGTCCCTTTGCTGCGCGGGGATGCACCTG 24849 28 100.0 32 ............................ TTACGAGCACACGCGCCAAAGGTTCGCCGCAC 24909 28 100.0 32 ............................ GTTGTGCGTTAATTTGATATGGCCGGGGTATT 24969 28 100.0 32 ............................ TTGGCGACTGGTTCCCGCGCGGTACCCTTGTT 25029 28 100.0 32 ............................ TGTAAAATATTCCGGCCGCACCATCAATAAAC 25089 28 100.0 32 ............................ TTCCGTAAGTGCCAGAGAGCCAAAACCTGTAC 25149 28 100.0 32 ............................ GTTTTCACAAGCGCTTCGGCGCGGGGATTTAT 25209 28 100.0 32 ............................ AGAGTATGTAGATGGAGGGCGTTCTGTACAAA 25269 28 100.0 32 ............................ TTCGAGCGGATTACGATCCCACAGTCGATATC 25329 28 100.0 32 ............................ TATGACCCCCTCACCAGTCACCAGTCAGTATT 25389 28 100.0 32 ............................ AGCGAGAAAGCCTAGCTGCGGCCAGATGAAAT 25449 28 100.0 32 ............................ TGTAGCGAATCAAGCGATGATTTTATACGCTC 25509 28 100.0 32 ............................ TCTTCATCATCAAGCGTAATATCAGGCCCAAA 25569 28 100.0 32 ............................ TCTTTCGTCCCCGGTGAAGCACACGATACGGT 25629 28 100.0 32 ............................ CCAGTGCAGCAGTTAAAGAACCAGAAGAACTG 25689 28 100.0 32 ............................ TCGTTCTCGGTCGTACTGGATCAGGAAAAACA 25749 28 100.0 32 ............................ GTATTATCATACGGAATGGTGACATGCAGGTC 25809 28 100.0 32 ............................ ATTTTGGCCCAGATTTGATAAGGTCGCTGCCC 25869 28 100.0 32 ............................ ATCCGCTCGATACGCTCGAAGAGGCCAGCGAA 25929 28 100.0 32 ............................ CAGCGCCCCGGCGAGCGGGACAGTAGCCAAGC 25989 28 100.0 32 ............................ GCTTTTCAGAGTTCTAGTTGGGCCGCGGATTT 26049 28 100.0 32 ............................ TTTCTTCCCCCCTATGACCCCCCTCACCAGTC 26109 28 100.0 32 ............................ GCCAGCAAGCGTAACTGACCCGATCCTGATCT 26169 28 96.4 32 .........A.................. TCTGGTTTCCCAAGCGTGAGTGCTTGCCGCGC 26229 28 100.0 32 ............................ ATAGATCGGGGTGCGGGTTGATCAGGTAAGAC 26289 28 100.0 32 ............................ AAGAGGCGGTGGTGGGCTTGGCGCTTGTCTCC 26349 28 100.0 32 ............................ ACGCGATTTGCCGAAACTTTAGCAGCGCGCAA 26409 28 100.0 32 ............................ GCGATGTCTTGTGCCGACCTGAGAAAGAGCGC 26469 28 100.0 32 ............................ ATGTCGCCATTGCTGTTTTCATCTAGTTGATG 26529 28 100.0 32 ............................ TGCTCATTATTGCGCAAATTTTCGACTAGCAT 26589 28 96.4 32 ...........................T GAGTTGACCCCTGCCAGCGGGCGCTTGTACTG 26649 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 64 28 99.9 32 GTTATCCGCCGCACAGGCGGCTTAGAAG # Left flank : TTACGGAGTGCTGGCGAAAAAATACAAATTGCAGGACTTCCGACGCGAGGACGGGAAGCGCAGCCGGGATGATGTTCCAGCCATCATCAACGGTTTTCTCGATCACGGAAATTATATTGCTTACGGATATGCAGGGGTTTCCCTTTATACGCTGGGGATTTCTTACGCATTGCCGCTGTTGCATGGGAAAACCCGGCGTGGTGCTCTCGTTTTTGATGTGGCCGATCTCATCAAGGATGCGGTCGTTATGCCCATGGCATTTGAGTTTGGGTCAAAGAACACCAAGGACCAGAAGTTTCGATCTATGCTCATTCAGCGCATGCAGTCCGTTGGCGCGACTGACCGGATGATTGATACCATCAAAGATACCATTGAAAAATCCGTCTAAAAATTCTCTTTGAGAATCAATAGGATGTGGCGGGCGGGAAAAACAAAGGTCTTTGTTCTTTGGCAAGTGATAAGTTGTTGTTCTGCAAGAATATTGTTTTAGTTTTCTTGCA # Right flank : GCAACACCGGCGTTCTCGGTTGCGTCGCGGAACTTTTACCGCGAACACACGCCTGGGCCTTTCGGCCCGTGCGCCCTGACCCGATTCTGATCTATACCCTTTTGACTGTTGGTGCATTGGTGCAAGGTGCTTTGGAGGCAAAATAATGATTACGGTTTATCGAGATGGGAGTCCTTTGCAGTTCAACGGCTTTCGGGATTATTTCTGCGCCGCCAAGCAAGGTGACGAGATTTACGACGATGTTGATTATTTGAGGTTCCTGGAGCCGTTGGTTGTGGAGGCGGTACTGAAAACGCAGATCAGACTGCGGATACCGAACGGATTAAAAGCCAACTTTACTGATCGCGGGTCTCGGGTGGGTAGCAATAAGTGGTATCTCCACCCAACCACGAAAGAAGAATGCGCAAACAAGCGGCTAGATGTGAGGGCGCGTAACATCCGCGCGGGTGTGTTTGCGCCATCATTTATTAAGGAGCAAAAGGAAAAAAACCGTAAAATCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCCGCCGCACAGGCGGCTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTATCCGCCGTGTAGGCGGCTTAGAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //